View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4256_low_17 (Length: 336)

Name: NF4256_low_17
Description: NF4256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4256_low_17
NF4256_low_17
[»] chr6 (10 HSPs)
chr6 (19-316)||(11170665-11170962)
chr6 (19-316)||(11209487-11209784)
chr6 (19-316)||(11276049-11276346)
chr6 (19-325)||(11196818-11197124)
chr6 (19-325)||(11156365-11156671)
chr6 (19-325)||(11199983-11200293)
chr6 (50-325)||(11241213-11241488)
chr6 (19-325)||(11161232-11161550)
chr6 (77-324)||(11133147-11133394)
chr6 (19-137)||(11314688-11314806)
[»] scaffold1207 (1 HSPs)
scaffold1207 (23-316)||(987-1277)
[»] chr7 (15 HSPs)
chr7 (163-241)||(8382727-8382805)
chr7 (163-241)||(8602213-8602291)
chr7 (160-241)||(13333307-13333388)
chr7 (160-240)||(10494226-10494306)
chr7 (160-240)||(8585558-8585638)
chr7 (160-239)||(8628768-8628847)
chr7 (160-234)||(27830733-27830807)
chr7 (167-229)||(29577532-29577594)
chr7 (160-241)||(8654686-8654767)
chr7 (160-241)||(8667655-8667736)
chr7 (161-241)||(6789749-6789829)
chr7 (160-240)||(8671482-8671562)
chr7 (167-241)||(3147515-3147589)
chr7 (163-241)||(7877584-7877662)
chr7 (163-241)||(8538275-8538353)
[»] chr4 (3 HSPs)
chr4 (161-241)||(9335742-9335822)
chr4 (161-240)||(30775489-30775568)
chr4 (160-241)||(35132684-35132765)
[»] chr2 (4 HSPs)
chr2 (160-241)||(7542462-7542543)
chr2 (160-240)||(16661844-16661924)
chr2 (160-241)||(16657368-16657449)
chr2 (160-240)||(14703644-14703724)
[»] chr1 (1 HSPs)
chr1 (160-240)||(34466645-34466725)


Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 316
Target Start/End: Original strand, 11170665 - 11170962
Alignment:
Q  19 ttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11170665 ttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtca 11170764  T
Q  119 aaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11170765 aaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcaaaacattga 11170864  T
Q  219 ggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaagg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  11170865 ggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatcctccactattgatccaagg 11170962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 316
Target Start/End: Original strand, 11209487 - 11209784
Alignment:
Q  19 ttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtca 118  Q
    ||||||||||||||||||||||||| || | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11209487 ttgtcccccgaggtgagtgtctcctgcaatagccttaacattgatatcaccatcctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtca 11209586  T
Q  119 aaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattga 218  Q
    || |||||||||||||||| |||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11209587 aatatgaaaacatttctacgtccatgattaaatggtttcatgccaaagccatatgcaattgcagctgcagtaggctcattgagtattcgcaaaacattga 11209686  T
Q  219 ggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaagg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  11209687 ggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatcatccactgttgatccaagg 11209784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 316
Target Start/End: Original strand, 11276049 - 11276346
Alignment:
Q  19 ttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtca 118  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11276049 ttgtcccccgaggtgagtgtctcctccaatggccttaacattgatatcaccattctcaaaagtgagaacagacacgtccaaagtaccaccacctaagtca 11276148  T
Q  119 aaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattga 218  Q
    || ||||||||||||||||||||||||||||||||||||  || || ||||||||||||||||||||||||||||||||| | |||||||||||| || |    
T  11276149 aatatgaaaacatttctacatccatgattaaatggtttcgtgttaaagccatatgcaattgcagctgcagtaggctcatttattattcgcataacgttta 11276248  T
Q  219 ggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaagg 316  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  11276249 ggccagcaatagcacccgcatctcgagtagactggcgctgtgagtcattaaagtatgcaggcacagttataacaacatcctccactgttaatccaagg 11276346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 325
Target Start/End: Original strand, 11196818 - 11197124
Alignment:
Q  19 ttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtca 118  Q
    ||||||||| ||||||||||||||| || | ||||||||||||||| |||| ||||||||||||||||  |||||||||| ||||||||||||||| |||    
T  11196818 ttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccgttctcaaatgtgagaatggacacgtccagagtaccaccacctaaatca 11196917  T
Q  119 aaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattga 218  Q
    ||||||||||||| |||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  11196918 aaaatgaaaacatgtctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattga 11197017  T
Q  219 ggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggta 318  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11197018 ggccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaaggta 11197117  T
Q  319 agcttca 325  Q
    |||||||    
T  11197118 agcttca 11197124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 325
Target Start/End: Original strand, 11156365 - 11156671
Alignment:
Q  19 ttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtca 118  Q
    ||||||||| ||||||||||||||| || | ||||||||||||||| |||| ||||||||||||||||  |||||||||||||||||||| ||||| |||    
T  11156365 ttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcacctttctcaaatgtgagaatggacacgtccaaagtaccacctcctaaatca 11156464  T
Q  119 aaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattga 218  Q
    ||||||||||||| | |||||||||||||||| ||||||| |||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  11156465 aaaatgaaaacatgtttacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattga 11156564  T
Q  219 ggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggta 318  Q
    ||||||||||| ||||||||||| | || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11156565 ggccagcaataacacccgcatcttgggtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaaggta 11156664  T
Q  319 agcttca 325  Q
    | |||||    
T  11156665 aacttca 11156671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 325
Target Start/End: Original strand, 11199983 - 11200293
Alignment:
Q  19 ttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtca 118  Q
    ||||||||| ||||||||||||||| || | ||||||||||||||| |||||||||||||||||||||  ||||| |||| ||||||||||||||| | |    
T  11199983 ttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccattctcaaatgtgagaatggacacatccagagtaccaccacctaaataa 11200082  T
Q  119 aaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattga 218  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| ||||||||||| |||||||| ||||||||    
T  11200083 aaaatgaaaacatttctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcaaaacattga 11200182  T
Q  219 ggccagcaatagcacccgcatctcgagtagactgg----cgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaa 314  Q
    |||||||||||||||||||||||| ||||||||||    |||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  11200183 ggccagcaatagcacccgcatctcaagtagactggcgtacgttgtgaatcattaaagtatgtaggcacaattataacaacatccttcactgttgatccaa 11200282  T
Q  315 ggtaagcttca 325  Q
    |||||||||||    
T  11200283 ggtaagcttca 11200293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 50 - 325
Target Start/End: Complemental strand, 11241488 - 11241213
Alignment:
Q  50 gccttaacattgatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaa 149  Q
    ||||||||||||||| |||||||||||||||||||||  |||||||||| ||||||||||||||| || ||||| | ||||| |||||||||||||||||    
T  11241488 gccttaacattgatagcaccattctcaaatgtgagaatggacacgtccagagtaccaccacctaaatcgaaaattagaacatgtctacatccatgattaa 11241389  T
Q  150 atggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtaga 249  Q
      | ||||| || ||||||||||||||||||| |||||||||||||| ||| ||||| || ||| |||||||||||||||||||||||||||||| ||||    
T  11241388 gagttttcatgttaaggccatatgcaattgcaactgcagtaggctcagtgattattcacaaaactttgaggccagcaatagcacccgcatctcgaataga 11241289  T
Q  250 ctggcgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttca 325  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11241288 ctggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaaggtaagcttca 11241213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 325
Target Start/End: Original strand, 11161232 - 11161550
Alignment:
Q  19 ttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtca 118  Q
    ||||||||  ||||||||||||||| || | ||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||| | |    
T  11161232 ttgtcccctaaggtgagtgtctcctgcaatcgccttaacattgatagcaccaatctcaaatgtgagaatagacacgtccaaagtaccaccacctaaataa 11161331  T
Q  119 aaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggc--------tcattgagtattcgcat 210  Q
    ||||||||||||| | |||||||||||||||| ||||||| |||||| ||||||||||||||| |||||||||||        ||||||| || ||||||    
T  11161332 aaaatgaaaacatgtatacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcatctgcagtaggctagtagagtcattgattactcgcat 11161431  T
Q  211 aacattgaggccagcaatagcacccgcatctcgagtagactgg----cgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgt 306  Q
    |||||| |||||| |||||||||||||||||||||||||||||    ||||||||  |||||||||||| ||||||| ||||||||||||||||||||||    
T  11161432 aacattaaggccaacaatagcacccgcatctcgagtagactggcgtacgttgtgaaacattaaagtatgtaggcacaattataacaacatccttcactgt 11161531  T
Q  307 tgatccaaggtaagcttca 325  Q
    |||||||||||||||||||    
T  11161532 tgatccaaggtaagcttca 11161550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 77 - 324
Target Start/End: Original strand, 11133147 - 11133394
Alignment:
Q  77 aatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaa 176  Q
    |||||||||| |||||| ||||| |||||||| ||||| |||||||  ||||||| | ||    |||||||||| ||||||  |||||| ||||||||||    
T  11133147 aatgtgagaatagacacatccaatgtaccacctcctaaatcaaaaacaaaaacatgtttatggtcatgattaaacggtttcttgtcaagaccatatgcaa 11133246  T
Q  177 ttgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgc 276  Q
    |||||||||| |||||||| |||| |||||||||||| ||||| || |||||| |||| ||||||| |||||  |||||||| |||||||||||||| ||    
T  11133247 ttgcagctgctgtaggctcgttgattattcgcataacgttgagacctgcaataacacctgcatctctagtagcttggcgttgcgagtcattaaagtaagc 11133346  T
Q  277 aggcacagttataacaacatccttcactgttgatccaaggtaagcttc 324  Q
    ||| ||||||||||| ||||||||||||||||||||||||||| ||||    
T  11133347 aggaacagttataacgacatccttcactgttgatccaaggtaaacttc 11133394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 11314806 - 11314688
Alignment:
Q  19 ttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtca 118  Q
    ||||||||| |||||||||||||| |||  |||| |||| |||||  |||||||||||| |||||||| |||||| ||||||||||| ||||| || ||     
T  11314806 ttgtcccccaaggtgagtgtctccgccaacggccctaactttgatggcaccattctcaagtgtgagaatagacacatccaaagtaccgccacccaaatcg 11314707  T
Q  119 aaaatgaaaacatttctac 137  Q
    || ||||||||||||||||    
T  11314706 aagatgaaaacatttctac 11314688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1207 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 23 - 316
Target Start/End: Original strand, 987 - 1277
Alignment:
Q  23 cccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaa 122  Q
    |||| |||||||||||||||| || | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  987 cccctgaggtgagtgtctcctacaatagccttaacattgatatcaccattctcaaatttgagaacagacacgtccaaagtaccaccacctaagtcaaaaa 1086  T
Q  123 tgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggcc 222  Q
    ||||||||||||||  ||||||     |||||||   ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  1087 tgaaaacatttctatgtccatgtg---atggttttgtgtcaaagccatatgcaattgcagctgcagtaggctcattgagtattcccaaaacattgaggcc 1183  T
Q  223 agcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaagg 316  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1184 agcaatagcacctgcatctcgagtagattggcgttgtgagtcattaaagtatgcaggcacagttataacaacatcctccactgttgatccaagg 1277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 241
Target Start/End: Complemental strand, 8382805 - 8382727
Alignment:
Q  163 aaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 241  Q
    ||||||||||||||  ||||| ||||| |||||||||| ||| ||||| ||||||||||||||||| ||||| ||||||    
T  8382805 aaggccatatgcaagagcagcggcagttggctcattgattatccgcattacattgaggccagcaatcgcaccagcatct 8382727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 241
Target Start/End: Original strand, 8602213 - 8602291
Alignment:
Q  163 aaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 241  Q
    ||||||||||||||  ||||||||||| |||||||||| ||| ||||| |||||||| |||||||| ||||| ||||||    
T  8602213 aaggccatatgcaagagcagctgcagttggctcattgattatccgcattacattgagaccagcaatggcaccagcatct 8602291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 160 - 241
Target Start/End: Complemental strand, 13333388 - 13333307
Alignment:
Q  160 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 241  Q
    |||||||||||||||||| || || |||||||| ||||||| |||||| || | ||| ||||||||||||||||| ||||||    
T  13333388 gtcaaggccatatgcaatagctgcagcagtaggttcattgattattcgaatgatattaaggccagcaatagcaccagcatct 13333307  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 240
Target Start/End: Complemental strand, 10494306 - 10494226
Alignment:
Q  160 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 240  Q
    |||||||||||||||||| || || |||||||| ||||||| ||| || || ||||| ||||||||||||||||| |||||    
T  10494306 gtcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaatagcaccagcatc 10494226  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 160 - 240
Target Start/End: Complemental strand, 8585638 - 8585558
Alignment:
Q  160 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 240  Q
    |||||||||||||||||| || || ||||| || ||||||| ||| | ||||||||| ||||||||||| ||||| |||||    
T  8585638 gtcaaggccatatgcaatagctgcagcagtgggttcattgattatcctcataacattaaggccagcaatggcaccagcatc 8585558  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 239
Target Start/End: Original strand, 8628768 - 8628847
Alignment:
Q  160 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcat 239  Q
    |||||||||||||||||| || || ||||| || ||||||| ||| | ||||||||| ||||||||||| ||||| ||||    
T  8628768 gtcaaggccatatgcaatagctgcagcagtggggtcattgattatcctcataacattaaggccagcaatggcaccagcat 8628847  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 27830807 - 27830733
Alignment:
Q  160 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacc 234  Q
    |||||||||||||||||| || || |||||||||||  | | ||| ||||||||||| ||||||||||| |||||    
T  27830807 gtcaaggccatatgcaatagctgcagcagtaggctcgcttattatccgcataacattaaggccagcaatggcacc 27830733  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 29577594 - 29577532
Alignment:
Q  167 ccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaata 229  Q
    |||||||||| |||||| ||||| || ||||||| ||| ||||| ||||||||||||||||||    
T  29577594 ccatatgcaagtgcagcagcagttggttcattgattatccgcattacattgaggccagcaata 29577532  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 241
Target Start/End: Original strand, 8654686 - 8654767
Alignment:
Q  160 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 241  Q
    |||||||||||||||||| || || |||||||| ||||||||||| || || || || || |||||||| ||||| ||||||    
T  8654686 gtcaaggccatatgcaatagctgcggcagtaggttcattgagtatccgaatgacgttaagtccagcaatggcaccagcatct 8654767  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 241
Target Start/End: Original strand, 8667655 - 8667736
Alignment:
Q  160 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 241  Q
    |||||||||||||||||| || || |||||||| ||||||| ||| || || ||||| || |||||||||| ||| ||||||    
T  8667655 gtcaaggccatatgcaatagctgccgcagtaggttcattgattatccgaatgacattaagtccagcaatagtaccagcatct 8667736  T

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Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 241
Target Start/End: Original strand, 6789749 - 6789829
Alignment:
Q  161 tcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 241  Q
    ||||||||||||||||  ||||| || || || ||||||| |||||| |||||||| || |||||||| ||||| ||||||    
T  6789749 tcaaggccatatgcaagagcagcagctgttggttcattgattattcgtataacattaagaccagcaatggcaccagcatct 6789829  T

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Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 240
Target Start/End: Complemental strand, 8671562 - 8671482
Alignment:
Q  160 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 240  Q
    |||||||||||||||||| || || |||||||| ||||||| ||| || || ||||| || |||||||||| ||| |||||    
T  8671562 gtcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaagtccagcaatagtaccagcatc 8671482  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 241
Target Start/End: Original strand, 3147515 - 3147589
Alignment:
Q  167 ccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 241  Q
    ||||| ||||| || || |||||||| ||||||| ||| ||||||| ||| |||||||||||| |||| ||||||    
T  3147515 ccatacgcaatagctgcagcagtaggttcattgattatccgcataatattaaggccagcaataacaccagcatct 3147589  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 241
Target Start/End: Complemental strand, 7877662 - 7877584
Alignment:
Q  163 aaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 241  Q
    ||||||||||||||  ||||| ||||| || ||||| | ||| ||||||||||||||||| ||||  ||||| ||||||    
T  7877662 aaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaactgcaccagcatct 7877584  T

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Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 241
Target Start/End: Original strand, 8538275 - 8538353
Alignment:
Q  163 aaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 241  Q
    |||||| |||||||  ||||| || ||||| ||||||| ||| ||||| |||||||||||||||||  |||| ||||||    
T  8538275 aaggccgtatgcaagagcagcagctgtaggttcattgattatccgcattacattgaggccagcaatgacaccagcatct 8538353  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 161 - 241
Target Start/End: Complemental strand, 9335822 - 9335742
Alignment:
Q  161 tcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 241  Q
    ||||||||||||||||| || || |||||||| ||||||| ||| || || ||||| ||||||||||||| ||| ||||||    
T  9335822 tcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaatagtaccagcatct 9335742  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 240
Target Start/End: Original strand, 30775489 - 30775568
Alignment:
Q  161 tcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 240  Q
    ||||| ||||||||||| || |||||||| |||||||| | ||||| ||||||||| || |||||||| ||||| |||||    
T  30775489 tcaagtccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaatggcaccagcatc 30775568  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 241
Target Start/End: Original strand, 35132684 - 35132765
Alignment:
Q  160 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 241  Q
    |||||||||||||||||  || || |||||||| ||||| | || || |||||||||| | |||||||||||||| ||||||    
T  35132684 gtcaaggccatatgcaaccgctgcggcagtaggttcattcattactctcataacattgggaccagcaatagcaccagcatct 35132765  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 241
Target Start/End: Original strand, 7542462 - 7542543
Alignment:
Q  160 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 241  Q
    |||||||||||||||||  || || |||||||| ||||| | |   | ||||||||||||||||||||| ||||||||||||    
T  7542462 gtcaaggccatatgcaacagctgcggcagtaggttcattcattgccctcataacattgaggccagcaatggcacccgcatct 7542543  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 240
Target Start/End: Complemental strand, 16661924 - 16661844
Alignment:
Q  160 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 240  Q
    |||||||||||||||||| || |||||||| || ||||||| ||| | || ||| || ||||||||||| ||||| |||||    
T  16661924 gtcaaggccatatgcaatagctgctgcagtgggttcattgattatcctcacaacgttaaggccagcaatggcaccagcatc 16661844  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 241
Target Start/End: Complemental strand, 16657449 - 16657368
Alignment:
Q  160 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 241  Q
    |||||| ||||||||||| || || |||||||| |||||||  ||||| || ||||| |||||||| || ||||| ||||||    
T  16657449 gtcaagaccatatgcaatagctgcagcagtaggttcattgataattcgaatgacattaaggccagcgatggcaccagcatct 16657368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 240
Target Start/End: Original strand, 14703644 - 14703724
Alignment:
Q  160 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 240  Q
    |||||||||||||||||| || || || ||||| ||||| | ||  | ||||||||||||||| |||||| |||| |||||    
T  14703644 gtcaaggccatatgcaatagctgcagctgtaggttcattcattaccctcataacattgaggccggcaataacaccagcatc 14703724  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 240
Target Start/End: Complemental strand, 34466725 - 34466645
Alignment:
Q  160 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 240  Q
    |||||| ||||||||||| || || ||||| || ||||||| |||| ||| |||||| ||||||||||||| ||| |||||    
T  34466725 gtcaagtccatatgcaatagctgcagcagtgggttcattgattatttgcaaaacattaaggccagcaatagtaccagcatc 34466645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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