View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4256_low_18 (Length: 318)
Name: NF4256_low_18
Description: NF4256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4256_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 14 - 304
Target Start/End: Complemental strand, 1718941 - 1718651
Alignment:
| Q |
14 |
gcagattatcaaggcacaaattgggatgacaatgatccatcagtttttcatatgacaattgtaaacacattacaaggagagtaccaacttactaatggtt |
113 |
Q |
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| T |
1718941 |
gcagattatcaaggcacaaattgggatgacaatgatccatcagtttttcatatgacaattgtaaacacattacaaggagagtaccaacttactaatggtt |
1718842 |
T |
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| Q |
114 |
atggcaatagagctcctcaagttatgcgagtaagaaatctaagagcattttcatgagaaatagtaaacttgctagataggaagttatcaattttgttgaa |
213 |
Q |
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| T |
1718841 |
atggaaatagagctcctcaagttatgcgagtaagaaatctaagagcattttcatgagaaatagtaaacttgctagattggaagttatcaattttgttgaa |
1718742 |
T |
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| Q |
214 |
ctttgtttgcttttcaggaccattggaattcatacataactgaagatgatttcagatttatgtcacaaaatggattagatgcagtgagaat |
304 |
Q |
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| T |
1718741 |
ctttgtttgctttgcaggagcattggaattcgtacataactgaagatgatttcagatttatgtcacaaaatggattagatgcagtgagaat |
1718651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 14 - 304
Target Start/End: Complemental strand, 1740279 - 1739989
Alignment:
| Q |
14 |
gcagattatcaaggcacaaattgggatgacaatgatccatcagtttttcatatgacaattgtaaacacattacaaggagagtaccaacttactaatggtt |
113 |
Q |
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| T |
1740279 |
gcagattatcaaggcacaaattgggatgacaatgatccatcagtttttcatatgacaaatgtaaacacattacaaggagagtaccaacttactaatggtt |
1740180 |
T |
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| Q |
114 |
atggcaatagagctcctcaagttatgcgagtaagaaatctaagagcattttcatgagaaatagtaaacttgctagataggaagttatcaattttgttgaa |
213 |
Q |
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| T |
1740179 |
atggaaatagagctcctcaagttatgcgagtaagaaatctaagagcattttcatgagaaatagtaaacttgctagattggaagttatcaattttgttgaa |
1740080 |
T |
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| Q |
214 |
ctttgtttgcttttcaggaccattggaattcatacataactgaagatgatttcagatttatgtcacaaaatggattagatgcagtgagaat |
304 |
Q |
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| T |
1740079 |
ctttgtttgctttgcaggagcattggaatttatacataactgaagatgatttcagatttatgtcacaaaatggattagatgcagtgagaat |
1739989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 209 - 304
Target Start/End: Complemental strand, 1750457 - 1750362
Alignment:
| Q |
209 |
ttgaactttgtttgcttttcaggaccattggaattcatacataactgaagatgatttcagatttatgtcacaaaatggattagatgcagtgagaat |
304 |
Q |
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| T |
1750457 |
ttgagctttgtttgctttgcaggagcattggaattcatacataactgaagatgatttcagatttatgtcacaaaatggattagatgcagtcagaat |
1750362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 209 - 304
Target Start/End: Complemental strand, 1755521 - 1755426
Alignment:
| Q |
209 |
ttgaactttgtttgcttttcaggaccattggaattcatacataactgaagatgatttcagatttatgtcacaaaatggattagatgcagtgagaat |
304 |
Q |
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| T |
1755521 |
ttgagctttgtttgctttgcaggaccattggaattcttacataactgaagatgatttcacattcatgtcacaaaatggattaaatgcagtgagaat |
1755426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 1750662 - 1750563
Alignment:
| Q |
18 |
attatcaaggcacaaattgggatgacaatgatccatcagtttttcatatgacaattgtaaacacattacaaggagagtaccaacttactaatggttatgg |
117 |
Q |
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| T |
1750662 |
attatcaaggcacaaattgggaagaaagtgacccatcagtctttaaaatgacaattgtaagaactttagaaggagagtaccaacttactaatggttatgg |
1750563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 1755723 - 1755628
Alignment:
| Q |
22 |
tcaaggcacaaattgggatgacaatgatccatcagtttttcatatgacaattgtaaacacattacaaggagagtaccaacttactaatggttatgg |
117 |
Q |
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| T |
1755723 |
tcaaggcacaagttgggaagaaagtgacccatcagtatttcgtatgaaaattgtaagaactttagaaggagagtaccaacttactaatggttatgg |
1755628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 305
Target Start/End: Complemental strand, 38088597 - 38088541
Alignment:
| Q |
249 |
ataactgaagatgatttcagatttatgtcacaaaatggattagatgcagtgagaatt |
305 |
Q |
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| T |
38088597 |
ataacagaagaagatttcagattcatgtcagaaaatgggttaaatgcagtcagaatt |
38088541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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