View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4256_low_19 (Length: 311)
Name: NF4256_low_19
Description: NF4256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4256_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 309
Target Start/End: Complemental strand, 25719423 - 25719124
Alignment:
| Q |
11 |
cacagacatcaagtgaccaattggaacgcaattaataagaaatctactgctaaatgtaaagtggtaacaacaattttaccatatttgatattgcaggctt |
110 |
Q |
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||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
25719423 |
cacaggcatcaagtgaccaattgaaacgcaattaataagaaatctactgctaaatgtaaagtggtaataacaattttaccatatttgatattacaggctt |
25719324 |
T |
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| Q |
111 |
ccaattactaccaacatgatcatgcaaacatacatgataaagattttaacgttacgattgaatctgatatagtgttgtgtagttaaatgcc-gtcatggc |
209 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
25719323 |
ccaattactaccaacatgatcatgcaatcatacatgataaagattttaacgttatgattgaatctgatatagtgttgtgtagttaaatgccagtcatggc |
25719224 |
T |
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| Q |
210 |
ggaaatggtatggtagnnnnnnngacaactgccacggacaattttcaaagggatgtccagcactacccctatcaacaccacagagaaacagatcatgtca |
309 |
Q |
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||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25719223 |
ggaaatggtatggcagtttttttgacaaccgccacggacaattttcaaagggatgtccagcactacctctatcaacaccacagagaaacagatcatgtca |
25719124 |
T |
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Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 11 - 133
Target Start/End: Original strand, 53253344 - 53253466
Alignment:
| Q |
11 |
cacagacatcaagtgaccaattggaacgcaattaataagaaatctactgctaaatgtaaagtggtaacaacaattttaccatatttgatattgcaggctt |
110 |
Q |
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||||| ||||| |||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
53253344 |
cacaggcatcaggtgaccaattgggatgcaattaataacaaatctactgctaaatgtaaagtggtaacaacaattttaccatatttgatattacaggctt |
53253443 |
T |
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| Q |
111 |
ccaattactaccaacatgatcat |
133 |
Q |
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||||||||||||| ||||||||| |
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| T |
53253444 |
ccaattactaccagcatgatcat |
53253466 |
T |
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