View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4256_low_2 (Length: 590)
Name: NF4256_low_2
Description: NF4256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4256_low_2 |
 | |
|
| [»] scaffold0130 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 250 - 574
Target Start/End: Complemental strand, 25718883 - 25718559
Alignment:
| Q |
250 |
cagcaggtgtcaatgcaccattggttttcaagactcactatttgtcggcttgcactaatcttctgcattgcatataagaagataatcaattttagatttg |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25718883 |
cagcaggtgtcaatgcaccattggttttcaagactcactatttgtcggcttgcactaatcttctgcattgcatataagaagataatcaattttagatttg |
25718784 |
T |
|
| Q |
350 |
aatatcaacaatcaacaatagcaaacaaattaacagaaacaaaattttatatcagccagaattttcttatgagcagcttaacaacagaaacagaatcacc |
449 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25718783 |
aatatcaacaatcaacaatagcaaacaaattaacagaaacagaattttatatcagccagaattttcttatgagcagcttaacaacagaaacagaatcacc |
25718684 |
T |
|
| Q |
450 |
cttcaaaattttaattaaaatatgatatagctctattatttaatttgtaagatgaagtaagtatcttgacatcagacaaagtttgagatattgttcaagt |
549 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25718683 |
cttcaaaattttaattaaaatatgatatagctctattatttaatttgtgagatgaagtaagtatcttgacatcagacaaagtttgagatattgttcaagt |
25718584 |
T |
|
| Q |
550 |
attcaacaaatggcatttccaagtt |
574 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
25718583 |
attcaacaaatggcatttccaagtt |
25718559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 25719132 - 25718963
Alignment:
| Q |
1 |
atcatgtcaacattaatagttgatccccttctgctgctagcagaggagtaagtttgacaaaaacccatttctaatgttctttaaaggtcaaatgaaaaat |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25719132 |
atcatgtcagcattaatagttgatccccttctgctgctagcagaggagtaagtttgacaaaaacccatttctaatgttctttaaaggtcaaataaaaaat |
25719033 |
T |
|
| Q |
101 |
atctaataatcataatcactcataaacatttggtccacttaaattttgaatagtctagctactatctagc |
170 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
25719032 |
atctaataatcataatcattcatagacatttggtccactaaaattttgaatagtctagctactatctagc |
25718963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 250 - 574
Target Start/End: Complemental strand, 29685900 - 29685576
Alignment:
| Q |
250 |
cagcaggtgtcaatgcaccattggttttcaagactcactatttgtcggcttgcactaatcttctgcattgcatataagaagataatcaattttagatttg |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29685900 |
cagcaggtgtcaatgcaccattggttttcaagactcactatttgtcggcttgcactaatcttctgcattgcatataagaagataatcaattttagatttg |
29685801 |
T |
|
| Q |
350 |
aatatcaacaatcaacaatagcaaacaaattaacagaaacaaaattttatatcagccagaattttcttatgagcagcttaacaacagaaacagaatcacc |
449 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
29685800 |
aatatcaacaatcaacaatagcaaacaaattaacagaaacagaattttatatcagccagaattttcttatgaccagcttaacaacagaaacagaatcacc |
29685701 |
T |
|
| Q |
450 |
cttcaaaattttaattaaaatatgatatagctctattatttaatttgtaagatgaagtaagtatcttgacatcagacaaagtttgagatattgttcaagt |
549 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29685700 |
cttcaaaattttaattaaaatatgatatagctctattatttaatttgtgagatgaagtaagtatcttgacatcagacaaagtttgagatattgttcaagt |
29685601 |
T |
|
| Q |
550 |
attcaacaaatggcatttccaagtt |
574 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
29685600 |
attcaacaaatggcatttccaagtt |
29685576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 250 - 381
Target Start/End: Complemental strand, 40598466 - 40598335
Alignment:
| Q |
250 |
cagcaggtgtcaatgcaccattggttttcaagactcactatttgtcggcttgcactaatcttctgcattgcatataagaagataatcaattttagatttg |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||| ||||| || |||||| ||||| |
|
|
| T |
40598466 |
cagcaggtgtcaatgcaccattggttttcaagactcaccatttgtctgcttgcactaatctcctgcattgcatataaaaagatcataaattttttatttg |
40598367 |
T |
|
| Q |
350 |
aatatcaacaatcaacaatagcaaacaaatta |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
40598366 |
aatatcaacaatcaacaatagcaaacaaatta |
40598335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 396 - 462
Target Start/End: Complemental strand, 40597869 - 40597802
Alignment:
| Q |
396 |
ttatatcagccagaattttcttatgagcagct-taacaacagaaacagaatcacccttcaaaatttta |
462 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||| |||| |
|
|
| T |
40597869 |
ttatatcagccagaattttcttctgagcagctccaacaacagaaacagaatcacccttgaaaaattta |
40597802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 53253814 - 53253897
Alignment:
| Q |
3 |
catgtcaacattaatagttgatccccttctgctgctagcagaggagtaagtttgacaaaaacccatttctaatgttctttaaag |
86 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||| |||||||||||| |||||||||||| |
|
|
| T |
53253814 |
catgtcaacattaatagttgatccccttctgctgccagcagaggaataagttcgacaacaacccatttctattgttctttaaag |
53253897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0130 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0130
Description:
Target: scaffold0130; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 143
Target Start/End: Complemental strand, 20736 - 20698
Alignment:
| Q |
105 |
aataatcataatcactcataaacatttggtccacttaaa |
143 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
20736 |
aataatcataatcattcataaacatttggtccacttaaa |
20698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 9122498 - 9122449
Alignment:
| Q |
342 |
tagatttgaatatcaacaatcaacaatagcaaacaaattaacagaaacaa |
391 |
Q |
| |
|
|||||||||||||||||| ||||||| || |||||||||||| |||||| |
|
|
| T |
9122498 |
tagatttgaatatcaacattcaacaaccgcgaacaaattaacataaacaa |
9122449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University