View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4256_low_25 (Length: 259)
Name: NF4256_low_25
Description: NF4256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4256_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 2 - 244
Target Start/End: Original strand, 9364600 - 9364842
Alignment:
| Q |
2 |
aaaaggcagaattacaaaattcttacatcaacaaaacatgaacttaagatgttcgtttgtggaatttactagtatggtaacccgtgcggacgcacggttg |
101 |
Q |
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| T |
9364600 |
aaaaggcagaattacaaaattcttacatcaacaaaacatgaacttaagatgttcgtttgtggaatttactagtatggtaacccgtgcggacgcacggttg |
9364699 |
T |
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| Q |
102 |
gacgttgtctttgaataacaaaaaattatgccaaacatttgcatcaaacaattaacgacaatcacacctcaatgttcgtataacatatgtcttaacaaaa |
201 |
Q |
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| T |
9364700 |
gacgttgtctttgaataacaaaaaattataccaaacatttgcatcaaacaattaacgacaatcacacctcaatgttcgtataacatatgtcttaacaaaa |
9364799 |
T |
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| Q |
202 |
acctcacctcgatgattatacttatcgacacactgatgttcat |
244 |
Q |
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| T |
9364800 |
acctcacctcgatgattatacttatcgacacactgatgttcat |
9364842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 9380846 - 9380913
Alignment:
| Q |
2 |
aaaaggcagaattacaaaattcttacatcaacaaaacatgaacttaagatgttcgtttgtggaattta |
69 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9380846 |
aaaaggcagaattacaaaattcttacatcaacaaaacatgaacttaagatgttcgtttgtggaattta |
9380913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 9398267 - 9398334
Alignment:
| Q |
2 |
aaaaggcagaattacaaaattcttacatcaacaaaacatgaacttaagatgttcgtttgtggaattta |
69 |
Q |
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||||| |||||||||||| ||||| | |||| |||||||||| |||||||||||||||| ||||||| |
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| T |
9398267 |
aaaagacagaattacaaatttcttttaccaactaaacatgaacataagatgttcgtttgttgaattta |
9398334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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