View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4256_low_26 (Length: 254)
Name: NF4256_low_26
Description: NF4256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4256_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 11318789 - 11319034
Alignment:
| Q |
1 |
aataatatatgaaatattataaaaagtatcatcaagaacattcatattctaaaatgcattaatcaataccataccnnnnnnnnnnnnnnnnnnnnnnttg |
100 |
Q |
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| T |
11318789 |
aataatatatgaaatattataaaaagtatcatcaagaacattcatattctaaaatgcattaatcaataccataccaaaaagaaaaattaaaataaaattg |
11318888 |
T |
|
| Q |
101 |
aacaggtaagtacctgattgtagtacgtaggcatccaggttaatagaataaatgtcccccaattgtggcagaagtgagagactattaaagcccagacagg |
200 |
Q |
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| T |
11318889 |
aacaggtaagtacctgattgtagtacgtaggcatccaggttaatagaataaatgtcccccaattgtggcagaagtgagagactattaaagcccagacagg |
11318988 |
T |
|
| Q |
201 |
tgcttttgataaaatcaatttccaaggaataactgtcacaggttct |
246 |
Q |
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| T |
11318989 |
tgcttttgataaaatcaatttccaaggaataactgtcacaggttct |
11319034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 112 - 230
Target Start/End: Complemental strand, 29402399 - 29402281
Alignment:
| Q |
112 |
acctgattgtagtacgtaggcatccaggttaatagaataaatgtcccccaattgtggcagaagtgagagactattaaagcccagacaggtgcttttgata |
211 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||| ||| | |||||| || ||||||||||||| |
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| T |
29402399 |
acctgattgtagtaagtaggcatccatgttaatagaataaatgttccccagttgtggcagaaatgagagattataagagcccatactggtgcttttgata |
29402300 |
T |
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| Q |
212 |
aaatcaatttccaaggaat |
230 |
Q |
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| T |
29402299 |
aaattaatttccaaggaat |
29402281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 112 - 230
Target Start/End: Original strand, 10159443 - 10159561
Alignment:
| Q |
112 |
acctgattgtagtacgtaggcatccaggttaatagaataaatgtcccccaattgtggcagaagtgagagactattaaagcccagacaggtgcttttgata |
211 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||| ||| | |||||| || ||||||||||||| |
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| T |
10159443 |
acctgattgtagtaagtaggcatccatgttaatagaataaatgttccccagttgtggcagaaatgagagattataagagcccatactggtgcttttgata |
10159542 |
T |
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| Q |
212 |
aaatcaatttccaaggaat |
230 |
Q |
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|||| |||||||||||||| |
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| T |
10159543 |
aaattaatttccaaggaat |
10159561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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