View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4256_low_27 (Length: 243)

Name: NF4256_low_27
Description: NF4256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4256_low_27
NF4256_low_27
[»] chr8 (28 HSPs)
chr8 (11-227)||(6311224-6311443)
chr8 (11-227)||(7289865-7290085)
chr8 (11-220)||(36979312-36979524)
chr8 (15-220)||(33037761-33037968)
chr8 (11-171)||(25328218-25328379)
chr8 (15-220)||(4760029-4760238)
chr8 (11-220)||(30655576-30655793)
chr8 (11-220)||(18853117-18853330)
chr8 (11-220)||(18870511-18870724)
chr8 (15-220)||(10689097-10689305)
chr8 (25-171)||(39784776-39784924)
chr8 (30-214)||(10684222-10684410)
chr8 (74-189)||(26287866-26287985)
chr8 (74-189)||(26301123-26301242)
chr8 (74-189)||(26313117-26313236)
chr8 (25-228)||(35745317-35745524)
chr8 (61-192)||(1261954-1262089)
chr8 (61-189)||(31071229-31071362)
chr8 (71-154)||(26403240-26403327)
chr8 (73-154)||(4456028-4456113)
chr8 (73-188)||(7412305-7412426)
chr8 (71-154)||(23799587-23799674)
chr8 (73-154)||(19175766-19175851)
chr8 (74-154)||(4696609-4696693)
chr8 (71-151)||(6127224-6127308)
chr8 (93-152)||(9765852-9765914)
chr8 (74-154)||(19752407-19752491)
chr8 (71-154)||(5702493-5702580)
[»] chr5 (34 HSPs)
chr5 (11-227)||(31180141-31180360)
chr5 (11-227)||(1457101-1457320)
chr5 (11-227)||(43592205-43592425)
chr5 (11-227)||(27449740-27449960)
chr5 (11-198)||(15044642-15044831)
chr5 (11-227)||(27444896-27445116)
chr5 (11-227)||(43598650-43598870)
chr5 (11-227)||(43604142-43604362)
chr5 (11-227)||(43609634-43609854)
chr5 (11-198)||(30631363-30631553)
chr5 (25-227)||(37556575-37556782)
chr5 (25-227)||(37561397-37561604)
chr5 (11-219)||(28807514-28807724)
chr5 (61-192)||(38192135-38192270)
chr5 (61-192)||(38219360-38219495)
chr5 (30-220)||(31396951-31397144)
chr5 (61-192)||(35387624-35387759)
chr5 (30-220)||(31401808-31402001)
chr5 (71-228)||(2785301-2785461)
chr5 (61-192)||(24135809-24135945)
chr5 (25-228)||(33791242-33791449)
chr5 (25-164)||(33768169-33768312)
chr5 (73-154)||(9353344-9353429)
chr5 (73-154)||(36932362-36932447)
chr5 (71-154)||(10281751-10281838)
chr5 (73-154)||(15464532-15464617)
chr5 (71-154)||(19588746-19588833)
chr5 (71-153)||(11916982-11917068)
chr5 (73-154)||(14520230-14520315)
chr5 (71-154)||(3880299-3880386)
chr5 (71-154)||(17003970-17004057)
chr5 (73-151)||(12084187-12084269)
chr5 (74-154)||(28832259-28832343)
chr5 (74-154)||(42127423-42127507)
[»] scaffold0355 (1 HSPs)
scaffold0355 (11-225)||(9583-9796)
[»] chr4 (29 HSPs)
chr4 (11-219)||(3813959-3814168)
chr4 (11-227)||(51520383-51520603)
chr4 (25-227)||(56146664-56146870)
chr4 (11-220)||(24741875-24742087)
chr4 (11-227)||(9224346-9224565)
chr4 (11-171)||(45357236-45357397)
chr4 (11-227)||(9229133-9229352)
chr4 (11-171)||(45347756-45347918)
chr4 (25-227)||(18855652-18855858)
chr4 (61-220)||(29760576-29760738)
chr4 (11-154)||(5732666-5732809)
chr4 (74-189)||(28468542-28468660)
chr4 (61-188)||(31985634-31985764)
chr4 (71-154)||(10047379-10047466)
chr4 (71-154)||(16623303-16623390)
chr4 (71-154)||(39245994-39246081)
chr4 (73-154)||(5396683-5396768)
chr4 (73-154)||(36315241-36315326)
chr4 (73-154)||(36329450-36329535)
chr4 (71-154)||(38152449-38152536)
chr4 (71-149)||(6743425-6743507)
chr4 (72-153)||(5143260-5143345)
chr4 (74-154)||(5269204-5269288)
chr4 (71-154)||(3796529-3796616)
chr4 (72-153)||(5147678-5147763)
chr4 (73-153)||(3777550-3777634)
chr4 (71-150)||(16630690-16630773)
chr4 (71-154)||(24333809-24333896)
chr4 (72-154)||(54867184-54867269)
[»] chr7 (34 HSPs)
chr7 (11-225)||(24024266-24024484)
chr7 (11-198)||(31109523-31109713)
chr7 (25-227)||(19992238-19992445)
chr7 (11-227)||(12396838-12397057)
chr7 (11-227)||(12406258-12406477)
chr7 (34-220)||(20357521-20357709)
chr7 (68-176)||(4866709-4866819)
chr7 (15-192)||(2057927-2058108)
chr7 (30-214)||(24266160-24266348)
chr7 (61-192)||(21639770-21639905)
chr7 (11-192)||(1533393-1533579)
chr7 (30-214)||(24261281-24261469)
chr7 (61-192)||(18408726-18408860)
chr7 (61-192)||(21645968-21646103)
chr7 (62-227)||(21812229-21812398)
chr7 (61-189)||(18413606-18413736)
chr7 (30-214)||(16880012-16880199)
chr7 (30-214)||(16884868-16885055)
chr7 (71-154)||(29159803-29159890)
chr7 (72-153)||(21983285-21983370)
chr7 (71-154)||(46516320-46516407)
chr7 (71-154)||(49091661-49091748)
chr7 (77-154)||(47263678-47263757)
chr7 (71-154)||(55948-56034)
chr7 (72-153)||(21988909-21988992)
chr7 (73-154)||(44848696-44848781)
chr7 (74-154)||(9190021-9190105)
chr7 (74-154)||(20284089-20284173)
chr7 (73-154)||(2479337-2479421)
chr7 (71-154)||(2647706-2647793)
chr7 (71-154)||(33332460-33332547)
chr7 (74-154)||(2580390-2580474)
chr7 (73-154)||(35960816-35960901)
chr7 (74-154)||(9185178-9185262)
[»] chr3 (46 HSPs)
chr3 (11-185)||(28503814-28503991)
chr3 (11-220)||(7167178-7167391)
chr3 (11-176)||(22173134-22173301)
chr3 (61-219)||(2671586-2671747)
chr3 (15-192)||(8739017-8739197)
chr3 (15-192)||(9091255-9091435)
chr3 (61-192)||(40372795-40372929)
chr3 (61-192)||(8477324-8477459)
chr3 (11-154)||(18656436-18656579)
chr3 (30-169)||(8512202-8512344)
chr3 (30-169)||(8517082-8517224)
chr3 (30-228)||(2672889-2673091)
chr3 (30-228)||(2677045-2677247)
chr3 (61-189)||(1305914-1306045)
chr3 (30-214)||(32475424-32475610)
chr3 (11-113)||(28501647-28501750)
chr3 (30-214)||(32480282-32480468)
chr3 (37-228)||(24968033-24968227)
chr3 (61-188)||(26928591-26928721)
chr3 (61-188)||(32143287-32143418)
chr3 (74-188)||(27986449-27986567)
chr3 (61-188)||(27452924-27453055)
chr3 (73-154)||(8370488-8370573)
chr3 (73-154)||(27974954-27975039)
chr3 (108-228)||(10207859-10207981)
chr3 (71-154)||(18552883-18552970)
chr3 (71-153)||(36029094-36029180)
chr3 (73-154)||(16264350-16264435)
chr3 (73-154)||(21711223-21711308)
chr3 (71-151)||(1736305-1736389)
chr3 (74-154)||(33386669-33386753)
chr3 (130-189)||(1309819-1309878)
chr3 (71-154)||(3716002-3716089)
chr3 (71-154)||(30709790-30709877)
chr3 (71-154)||(40592782-40592869)
chr3 (71-154)||(48438214-48438301)
chr3 (73-154)||(6794715-6794800)
chr3 (71-154)||(40844652-40844738)
chr3 (74-154)||(1417493-1417577)
chr3 (74-154)||(39039995-39040079)
chr3 (71-154)||(25795781-25795868)
chr3 (71-154)||(26298988-26299075)
chr3 (71-154)||(47923906-47923993)
chr3 (74-154)||(3328359-3328443)
chr3 (74-154)||(37466291-37466375)
chr3 (71-154)||(24695164-24695251)
[»] chr6 (26 HSPs)
chr6 (11-227)||(22010636-22010855)
chr6 (11-198)||(28184460-28184650)
chr6 (11-176)||(14737516-14737682)
chr6 (11-227)||(28155510-28155729)
chr6 (11-227)||(11856898-11857120)
chr6 (11-227)||(14742376-14742594)
chr6 (25-227)||(6438426-6438632)
chr6 (11-192)||(5674719-5674905)
chr6 (11-228)||(16838670-16838890)
chr6 (25-228)||(6005343-6005550)
chr6 (30-219)||(33330403-33330596)
chr6 (30-219)||(33335900-33336093)
chr6 (73-154)||(5757490-5757575)
chr6 (74-188)||(22708984-22709102)
chr6 (76-154)||(21356036-21356118)
chr6 (73-154)||(31086485-31086570)
chr6 (117-219)||(5343416-5343519)
chr6 (71-154)||(5572251-5572338)
chr6 (72-154)||(4629954-4630040)
chr6 (72-154)||(10077176-10077262)
chr6 (71-154)||(22963700-22963786)
chr6 (71-154)||(23824607-23824693)
chr6 (71-154)||(31979513-31979600)
chr6 (74-154)||(5017482-5017566)
chr6 (93-154)||(31936587-31936651)
chr6 (71-142)||(21801354-21801429)
[»] chr2 (31 HSPs)
chr2 (11-227)||(44312563-44312782)
chr2 (11-220)||(11098877-11099089)
chr2 (15-220)||(14291423-14291631)
chr2 (11-176)||(39811928-39812094)
chr2 (11-198)||(32246740-32246933)
chr2 (61-220)||(9296401-9296563)
chr2 (61-192)||(25398457-25398592)
chr2 (61-189)||(3491716-3491847)
chr2 (25-228)||(19344346-19344554)
chr2 (25-228)||(19349204-19349412)
chr2 (61-192)||(25403595-25403730)
chr2 (74-188)||(40738810-40738926)
chr2 (71-154)||(21629944-21630030)
chr2 (71-154)||(8040060-8040147)
chr2 (71-151)||(13569331-13569415)
chr2 (73-154)||(28259189-28259274)
chr2 (70-154)||(20522220-20522308)
chr2 (71-154)||(10445454-10445541)
chr2 (71-154)||(17865203-17865290)
chr2 (71-154)||(34682344-34682431)
chr2 (71-153)||(34388859-34388945)
chr2 (71-154)||(14699018-14699104)
chr2 (61-116)||(25407663-25407719)
chr2 (71-154)||(31056044-31056131)
chr2 (71-154)||(33528631-33528718)
chr2 (71-153)||(10707262-10707348)
chr2 (71-151)||(8390160-8390244)
chr2 (76-154)||(42039684-42039766)
chr2 (71-154)||(16940219-16940306)
chr2 (71-154)||(17010884-17010971)
chr2 (71-154)||(39482931-39483018)
[»] chr1 (27 HSPs)
chr1 (11-219)||(41398176-41398381)
chr1 (11-219)||(41390521-41390726)
chr1 (11-220)||(24787314-24787526)
chr1 (25-227)||(25445042-25445249)
chr1 (25-227)||(39445425-39445631)
chr1 (25-227)||(44023827-44024032)
chr1 (25-227)||(1054965-1055171)
chr1 (61-192)||(24202769-24202904)
chr1 (30-171)||(43988422-43988566)
chr1 (61-189)||(19361432-19361564)
chr1 (61-189)||(19380072-19380204)
chr1 (61-189)||(19358843-19358975)
chr1 (71-154)||(47703946-47704033)
chr1 (73-154)||(26644909-26644994)
chr1 (71-154)||(9476261-9476348)
chr1 (71-154)||(19072928-19073015)
chr1 (71-154)||(19120818-19120905)
chr1 (71-154)||(13598398-13598485)
chr1 (71-154)||(16124526-16124613)
chr1 (71-154)||(27104382-27104469)
chr1 (71-154)||(29651811-29651898)
chr1 (73-154)||(3281708-3281793)
chr1 (73-154)||(37069770-37069855)
chr1 (71-154)||(775672-775759)
chr1 (74-154)||(47098837-47098921)
chr1 (73-154)||(13604635-13604720)
chr1 (73-154)||(21536581-21536666)
[»] scaffold0135 (1 HSPs)
scaffold0135 (11-227)||(35001-35220)
[»] scaffold0464 (1 HSPs)
scaffold0464 (25-227)||(288-494)
[»] scaffold0188 (2 HSPs)
scaffold0188 (61-192)||(17952-18087)
scaffold0188 (61-192)||(24045-24180)
[»] scaffold0259 (1 HSPs)
scaffold0259 (30-228)||(2209-2410)
[»] scaffold0028 (1 HSPs)
scaffold0028 (30-228)||(148914-149115)
[»] scaffold0197 (2 HSPs)
scaffold0197 (30-214)||(14267-14455)
scaffold0197 (30-228)||(19123-19324)
[»] scaffold0009 (1 HSPs)
scaffold0009 (88-214)||(181980-182110)
[»] scaffold0978 (1 HSPs)
scaffold0978 (122-220)||(300-398)
[»] scaffold0140 (1 HSPs)
scaffold0140 (73-154)||(8431-8516)
[»] scaffold0036 (1 HSPs)
scaffold0036 (73-153)||(85684-85768)
[»] scaffold0006 (3 HSPs)
scaffold0006 (71-154)||(5683-5770)
scaffold0006 (71-154)||(2492-2579)
scaffold0006 (73-154)||(133292-133377)
[»] scaffold0087 (2 HSPs)
scaffold0087 (73-154)||(43973-44058)
scaffold0087 (73-154)||(36844-36929)
[»] scaffold0148 (1 HSPs)
scaffold0148 (71-154)||(10729-10816)
[»] scaffold0098 (1 HSPs)
scaffold0098 (74-154)||(45253-45337)
[»] scaffold0176 (1 HSPs)
scaffold0176 (71-151)||(17266-17350)


Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 6311443 - 6311224
Alignment:
Q  11 caaagggtagaatttagggtttgtcttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgctc 110  Q
    ||||||||||||| ||||||||||||||||||||||||||  ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6311443 caaagggtagaatctagggtttgtcttgtgtaaagcttgaaggctagagtttcttgtaaccttttgtaacactttctcatattggattggagagctgctc 6311344  T
Q  111 tctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctct 207  Q
    ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  6311343 tctcccccagattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgctttgttatctct 6311244  T
Q  208 ttgtgtgcttttgttataca 227  Q
    | ||||| ||||| ||||||    
T  6311243 tagtgtggttttgctataca 6311224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 7289865 - 7290085
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 109  Q
    ||||||||||||| |||||||||| | ||||||||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7289865 caaagggtagaatatagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaaccttttgtaacactttctcatattggattggagagctgct 7289963  T
Q  110 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcc-tttcttgcttatcttgtttat-gcttgttagct 205  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |  |||||||||||||| | |||||| ||    
T  7289964 ctctcccccagattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttccttttatcacttatcttgtttatggtttgttatct 7290063  T
Q  206 ctttgtgtgcttttgttataca 227  Q
    ||||||||| ||||| ||||||    
T  7290064 ctttgtgtggttttgctataca 7290085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 36979524 - 36979312
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagctgc 108  Q
    ||||||||||||| |||||||||| ||||||||| ||||||  ||||  | |||||| |||| |||||||||||||| ||||||||||||||||||||||    
T  36979524 caaagggtagaatctagggtttgttcttgtgtaa-gcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgc 36979426  T
Q  109 tctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagct 205  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||| || ||    
T  36979425 tctctcccccagattaggccatattggctgaactgggtcaacaatcttcttggtgttttgttcttcctttcttgcttatcttgttt-tgctttggtatct 36979327  T
Q  206 ctttgtgtgcttttg 220  Q
    ||||||||| |||||    
T  36979326 ctttgtgtggttttg 36979312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 33037761 - 33037968
Alignment:
Q  15 gggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgctctct 113  Q
    ||||||||| |||||||||| ||||||||| ||||||  ||||  | |||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  33037761 gggtagaatctagggtttgttcttgtgtaa-gcttgaaggctattgtttcttgtaaccctttgtaacactttctcatattggattggagagctgctctct 33037859  T
Q  114 ccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctctttg 210  Q
    |||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||| ||| || |||||||    
T  33037860 cccccagattaggccatattggctgaactgggtcaacaatcttcttggtgttttgttcttcttttcttgcttatcttgttt-tgctttggtatctctttg 33037958  T
Q  211 tgtgcttttg 220  Q
    |||| |||||    
T  33037959 tgtggttttg 33037968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 11 - 171
Target Start/End: Original strand, 25328218 - 25328379
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 109  Q
    ||||||||||||| |||||||||| | ||||||||||||||  |||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25328218 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag--tcttgtaaccttttgtaacactttctcatattggattggagagctgct 25328315  T
Q  110 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttctt 171  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25328316 ctctcccccagattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttctt 25328379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 4760029 - 4760238
Alignment:
Q  15 gggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctc 112  Q
    ||||||||| ||||| |||| ||||||||| ||||||  ||||  | |||||| |||| |||||||||||||| ||||||||||||||||||||||||||    
T  4760029 gggtagaatctagggcttgttcttgtgtaa-gcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctc 4760127  T
Q  113 tccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctcttt 209  Q
    ||||  | |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  4760128 tcccccatattaggccatattggctgaactgggtcaacaatcttcttgatgttttgttcttcctttcttgcttatcttgtttatgctttgttatctcttt 4760227  T
Q  210 gtgtgcttttg 220  Q
    ||||| |||||    
T  4760228 gtgtggttttg 4760238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 30655793 - 30655576
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagctgc 108  Q
    ||||||||||||| |||||||||| ||||||||| ||||||  ||||  | |||||| |||| |||||||||||||| ||||||| ||||||||||||||    
T  30655793 caaagggtagaatctagggtttgttcttgtgtaa-gcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattagattggagagctgc 30655695  T
Q  109 tctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtg----ttttgttcttcctttcttgcttatcttgtttatgc-ttgtt 201  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||| ||||    ||||||||||||||||||||||||||||||||||| |||||    
T  30655694 tctctcccccagattaggccatattggctgaactgggtcaacaatcttcttggtgttttttttgttcttcctttcttgcttatcttgtttatgctttgtt 30655595  T
Q  202 agctctttgtgtgcttttg 220  Q
    | |||| |||||| |||||    
T  30655594 atctctatgtgtggttttg 30655576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 18853117 - 18853330
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaacc-ttttgtaacactttc-tcatattggattggagagctg 107  Q
    ||||||||| ||| |||||||||| ||||||||| ||||||  ||||  | |||||| |||| ||||||||||||||| | |||||||||||||||||||    
T  18853117 caaagggtaaaatctagggtttgttcttgtgtaa-gcttgaatgctattgtttcttgtaacccttttgtaacactttcattatattggattggagagctg 18853215  T
Q  108 ctctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagc 204  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||| || |    
T  18853216 ctctctcccccagattaggccatattggctgaactgggtcaacaatcttcttggtgttttgttcttcctttcttgcttatcttgttt-tgctttggtatc 18853314  T
Q  205 tctttgtgtgcttttg 220  Q
    |||||||||| |||||    
T  18853315 tctttgtgtggttttg 18853330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 18870511 - 18870724
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaacc-ttttgtaacactttc-tcatattggattggagagctg 107  Q
    ||||||||||||| |||||||||| ||||||||| ||||||  ||||  | |||||| |||| ||||||||||||||| | |||||||||||||||||||    
T  18870511 caaagggtagaatctagggtttgttcttgtgtaa-gcttgaatgctattgtttcttgtaacccttttgtaacactttcattatattggattggagagctg 18870609  T
Q  108 ctctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagc 204  Q
    |||||||||  ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||| || |    
T  18870610 ctctctcccccagattaggccatattggatgaactgggtcaacaatcttcttggtgttttgttcttcctttcttgcttatcttgttt-tgctttggtatc 18870708  T
Q  205 tctttgtgtgcttttg 220  Q
    |||||||||| |||||    
T  18870709 tctttgtgtggttttg 18870724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 10689097 - 10689305
Alignment:
Q  15 gggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctc 112  Q
    ||||||||| ||||| |||| ||||||||| ||||||  ||||  | |||||| |||| | |||||||||||| ||||||||||||||||||||||||||    
T  10689097 gggtagaatctagggcttgttcttgtgtaa-gcttgaaggctattgtttcttgtaaccctctgtaacactttcatcatattggattggagagctgctctc 10689195  T
Q  113 tccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctcttt 209  Q
    ||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||| ||| || ||||||    
T  10689196 tcccccagattaggccatattggctgaactgggtcaacaatcttcttggtgttttgttcttcctttcttacttatcttgttt-tgctttggtatctcttt 10689294  T
Q  210 gtgtgcttttg 220  Q
    ||||| |||||    
T  10689295 gtgtggttttg 10689305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 25 - 171
Target Start/End: Original strand, 39784776 - 39784924
Alignment:
Q  25 tagggtttgt-cttgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgctctctccc--agat 120  Q
    |||||||||| | |||||||||||||||| |||||||  ||||| ||||||||||||||||| | |||||||||||||||||||||||||||||  ||||    
T  39784776 tagggtttgttcatgtgtaaagcttgataagctagag--tcttgtaaccttttgtaacactt-cacatattggattggagagctgctctctcccccagat 39784872  T
Q  121 taggccatattggctgaactgggtcaacaatctt-ctcggtgttttgttctt 171  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  39784873 taggccatattggctgaactgggtcaacaatcttgctcggtgttttgttctt 39784924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 30 - 214
Target Start/End: Original strand, 10684222 - 10684410
Alignment:
Q  30 tttgtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctgctctctccc--agattaggc 125  Q
    ||||||||||||||||||||||| ||||||  |||||| ||| |||||||||||| ||| |||||||||||||||||||||||||||||  |||||||||    
T  10684222 tttgtcttgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccagattaggc 10684319  T
Q  126 catattggctgaactgggtcaacaatctt-ctcggtgttttgttc---ttcctttcttgcttatcttgtttatgcttgttagctctttgtgtg 214  Q
    || |||||||||||||||||||||||||| || ||||||||||||   ||| ||| | | ||||||||  ||||||||||||||||| |||||    
T  10684320 cacattggctgaactgggtcaacaatcttgcttggtgttttgttcgttttcttttatcgtttatcttg--tatgcttgttagctcttagtgtg 10684410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 74 - 189
Target Start/End: Complemental strand, 26287985 - 26287866
Alignment:
Q  74 ttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgt-tttgttc 169  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| | ||||| |||||||    
T  26287985 ttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggccatattggctgaactgggtcaacaatctttttggtgtgtttgttc 26287886  T
Q  170 ttcctttcttgcttatcttg 189  Q
    ||||||||||||||||||||    
T  26287885 ttcctttcttgcttatcttg 26287866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 74 - 189
Target Start/End: Complemental strand, 26301242 - 26301123
Alignment:
Q  74 ttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgt-tttgttc 169  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| | ||||| |||||||    
T  26301242 ttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggccatattggctgaactgggtcaacaatctttttggtgtgtttgttc 26301143  T
Q  170 ttcctttcttgcttatcttg 189  Q
    ||||||||||||||||||||    
T  26301142 ttcctttcttgcttatcttg 26301123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 74 - 189
Target Start/End: Complemental strand, 26313236 - 26313117
Alignment:
Q  74 ttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgt-tttgttc 169  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| | ||||| |||||||    
T  26313236 ttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggccatattggctgaactgggtcaacaatctttttggtgtgtttgttc 26313137  T
Q  170 ttcctttcttgcttatcttg 189  Q
    ||||||||||||||||||||    
T  26313136 ttcctttcttgcttatcttg 26313117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 25 - 228
Target Start/End: Complemental strand, 35745524 - 35745317
Alignment:
Q  25 tagggtttgt-cttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctgctctctccc--aga 119  Q
    |||||||||| | |||||||||||||| | ||||||  |||||| ||| |||||||||||| ||| |||||||||||||||||||||||||||||  |||    
T  35745524 tagggtttgttcatgtgtaaagcttgaaaagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccaga 35745427  T
Q  120 ttaggccatattggctgaactgggtcaacaatctt-ctcggtgttttgttctt---cctttcttgcttatcttgtttatgcttgttagctctttgtgtgc 215  Q
    |||||||| |||||||||||||||||||||||||| ||||||| |||||||||   | ||| | | ||||||||  ||||||||||||||||| |||||     
T  35745426 ttaggccacattggctgaactgggtcaacaatcttgctcggtg-tttgttcttttccttttatcgtttatcttg--tatgcttgttagctcttagtgtgg 35745330  T
Q  216 ttttgttatacat 228  Q
    ||||| |||||||    
T  35745329 ttttgctatacat 35745317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 61 - 192
Target Start/End: Original strand, 1261954 - 1262089
Alignment:
Q  61 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 157  Q
    |||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||  |||||||| |||||||| |||||||||||||||||||| |     
T  1261954 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggttgaactgggtcaacaatcttttt 1262053  T
Q  158 ggtgt-tttgttcttcctttcttgcttatcttgttt 192  Q
    ||||| ||||||||||||||||  ||||||||||||    
T  1262054 ggtgtgtttgttcttcctttctatcttatcttgttt 1262089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 61 - 189
Target Start/End: Original strand, 31071229 - 31071362
Alignment:
Q  61 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatcttct 156  Q
    |||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||  |||||||| |||||||| | ||||| ||||||||||||| |    
T  31071229 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggaccgaactcggtcaacaatctttt 31071328  T
Q  157 cggtgt-tttgttcttcctttcttgcttatcttg 189  Q
     ||||| |||||||||||||||||||||||||||    
T  31071329 tggtgtgtttgttcttcctttcttgcttatcttg 31071362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 26403240 - 26403327
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| ||||| |||||||||||||||||||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  26403240 cttttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 26403327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 154
Target Start/End: Complemental strand, 4456113 - 4456028
Alignment:
Q  73 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||| ||||| |||||||||||||||||||||  |||||||||||||||||||| | |||| |||||| |||||||    
T  4456113 tttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggccatattggaccgaaccgggtcagcaatctt 4456028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 188
Target Start/End: Complemental strand, 7412426 - 7412305
Alignment:
Q  73 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatcttctcggtgt-tttgt 167  Q
    |||||||||||||| ||||| |||||||||||||||||||||  |||| |||||| |||||||| | |||||||||||||||| |||  ||||| |||||    
T  7412426 tttgtaacactttcatcatagtggattggagagctgctctctcccccatattaggtcatattggaccgaactgggtcaacaattttcatggtgtgtttgt 7412327  T
Q  168 tcttcctttc-ttgcttatctt 188  Q
    || | ||||| |||||||||||    
T  7412326 tccttctttcattgcttatctt 7412305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 23799587 - 23799674
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctctc--ccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| ||||| |||||||||| |||||||||||  ||| |||||| |||||||| | |||||||||||||||||||    
T  23799587 cttttgtaacactttcatcatagtggattggagggctgctctctcctccaaattaggtcatattggaccgaactgggtcaacaatctt 23799674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 19175766 - 19175851
Alignment:
Q  73 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||| ||||| |||||||||||| ||||||||  ||||||||||| |||||||| | ||||| |||||||||||||    
T  19175766 tttgtaacactttcatcatagtggattggagagttgctctctcccccagattaggtcatattggaccgaactaggtcaacaatctt 19175851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 4696609 - 4696693
Alignment:
Q  74 ttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattggct-gaactgggtcaacaatctt 154  Q
    ||||||| ||||| ||||| |||||||||| ||||||||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  4696609 ttgtaactctttcatcatagtggattggagggctgctctctcccccagattaggtcatattggatcgaactgggtcaacaatctt 4696693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 151
Target Start/End: Complemental strand, 6127308 - 6127224
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaat 151  Q
    |||||||||||||||| ||||| |||||||||||||||||||||  |||| |||||| |||||||| | |||||| |||||||||    
T  6127308 cttttgtaacactttcatcatagtggattggagagctgctctcttccccaaattaggtcatattggaccgaactgagtcaacaat 6127224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 152
Target Start/End: Original strand, 9765852 - 9765914
Alignment:
Q  93 tggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatc 152  Q
    |||||||||||||||||||||  ||||||||||| |||||||| | |||||||||||||||||    
T  9765852 tggattggagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatc 9765914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 19752407 - 19752491
Alignment:
Q  74 ttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    ||||||||||||| || || ||||||||||||||||||||||||  ||| |||| |||||||| | ||||| |||||||||||||    
T  19752407 ttgtaacactttcatcttagtggattggagagctgctctctcccctagactaggtcatattggaccgaactaggtcaacaatctt 19752491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 5702493 - 5702580
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| |||||  ||||||||| | |||||||||||  | |||||| |||||||| | |||||||||||||||||||    
T  5702493 cttttgtaacactttcatcataggggattggagggatgctctctcccccatattaggtcatattggaccgaactgggtcaacaatctt 5702580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 31180360 - 31180141
Alignment:
Q  11 caaagggtagaatttagggtttgtcttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgctc 110  Q
    ||||||||||||| ||||||||||||||||||||||||||  ||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  31180360 caaagggtagaatctagggtttgtcttgtgtaaagcttgaaggctagagtttcttgtaaccctttgtaacactttctcatattggattggagagctgctc 31180261  T
Q  111 tct--cccagattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctct 207  Q
    |||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||| |||||| ||||    
T  31180260 tctcccccagattaggccatattggctgaactgggtcaacaatcttcttggtgttttgttctttctttctttcttatcttgtttatgctttgttatctct 31180161  T
Q  208 ttgtgtgcttttgttataca 227  Q
    ||||||| ||||| ||||||    
T  31180160 ttgtgtggttttgctataca 31180141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 1457101 - 1457320
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 109  Q
    ||||||||||||| |||||||||| | ||||||||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1457101 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaaccttttgtaacactttctcatattggattggagagctgct 1457199  T
Q  110 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctc 206  Q
    |||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||    
T  1457200 ctctcccccagattaggccacattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttctttcttatcttgtttatgctttgttatctc 1457299  T
Q  207 tttgtgtgcttttgttataca 227  Q
    |||||||| ||||| ||||||    
T  1457300 tttgtgtggttttgctataca 1457320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 43592425 - 43592205
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 109  Q
    ||||||||||||| |||||||||| | ||||||||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43592425 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaaccttttgtaacactttctcatattggattggagagctgct 43592327  T
Q  110 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcc-tttcttgcttatcttgtttatgc-ttgttagct 205  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |  |||||||||||||||| |||||| ||    
T  43592326 ctctcccccagattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttccttttatcacttatcttgtttatgctttgttatct 43592227  T
Q  206 ctttgtgtgcttttgttataca 227  Q
    ||||||||| ||||| ||||||    
T  43592226 ctttgtgtggttttgctataca 43592205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 27449960 - 27449740
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 109  Q
    ||||||||||||| |||||||||| | ||||||||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27449960 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaaccttttgtaacactttctcatattggattggagagctgct 27449862  T
Q  110 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcc-tttcttgcttatcttgtttatgc-ttgttagct 205  Q
    |||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |  |||||||||||||||| |||||| ||    
T  27449861 ctctcccccagattaggctatattggctgaactgggtcaacaatcttctcggtgttttgttcttccttttatcacttatcttgtttatgctttgttatct 27449762  T
Q  206 ctttgtgtgcttttgttataca 227  Q
    ||||||||| ||||| ||||||    
T  27449761 ctttgtgtggttttgctataca 27449740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 11 - 198
Target Start/End: Complemental strand, 15044831 - 15044642
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 109  Q
    ||||||||||||| |||||||||| | |||||||||||||| ||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15044831 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaagctagag--tcttgtaaccttttgtaacactttctcatattggattggagagctgct 15044734  T
Q  110 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcc-tttcttgcttatcttgtttatgctt 198  Q
    |||||||  | |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  15044733 ctctcccccatattaggccatattggctgaactgggtcaacaatcttcttggtgttttgttcttccttttcttgcttatcttgtttatgctt 15044642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 27445116 - 27444896
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 109  Q
    ||||||||||||| |||||||||| | ||||||||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27445116 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaaccttttgtaacactttctcatattggattggagagctgct 27445018  T
Q  110 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcc-tttcttgcttatcttgtttatgc-ttgttagct 205  Q
    |||||||  ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||| |  |||||||||||||||| |||||| ||    
T  27445017 ctctcccccagattaggctatattgcctgaactgggtcaacaatcttctcggtgttttgttcttccttttatcacttatcttgtttatgctttgttatct 27444918  T
Q  206 ctttgtgtgcttttgttataca 227  Q
    ||||||||| ||||| ||||||    
T  27444917 ctttgtgtggttttgctataca 27444896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 43598870 - 43598650
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 109  Q
    ||||||||||||| |||||||||| | ||||||||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43598870 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaaccttttgtaacactttctcatattggattggagagctgct 43598772  T
Q  110 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcc-tttcttgcttatcttgtttatgc-ttgttagct 205  Q
    |||||||  ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||| |  |||||||||||||||| |||||| ||    
T  43598771 ctctcccccagattaggccatattggctgaactggaccaacaatcttctcggtgttttgttcttccttttatcacttatcttgtttatgctttgttatct 43598672  T
Q  206 ctttgtgtgcttttgttataca 227  Q
    ||||||||| ||||| ||||||    
T  43598671 ctttgtgtggttttgctataca 43598650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 43604362 - 43604142
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 109  Q
    ||||||||||||| |||||||||| | ||||||||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43604362 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaaccttttgtaacactttctcatattggattggagagctgct 43604264  T
Q  110 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcc-tttcttgcttatcttgtttatgc-ttgttagct 205  Q
    |||||||  ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||| |  |||||||||||||||| |||||| ||    
T  43604263 ctctcccccagattaggccatattggctgaactggaccaacaatcttctcggtgttttgttcttccttttatcacttatcttgtttatgctttgttatct 43604164  T
Q  206 ctttgtgtgcttttgttataca 227  Q
    ||||||||| ||||| ||||||    
T  43604163 ctttgtgtggttttgctataca 43604142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 43609854 - 43609634
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 109  Q
    ||||||||||||| |||||||||| | ||||||||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43609854 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaaccttttgtaacactttctcatattggattggagagctgct 43609756  T
Q  110 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcc-tttcttgcttatcttgtttatgc-ttgttagct 205  Q
    |||||||  ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||| |  |||||||||||||||| |||||| ||    
T  43609755 ctctcccccagattaggccatattggctgaactggaccaacaatcttctcggtgttttgttcttccttttatcacttatcttgtttatgctttgttatct 43609656  T
Q  206 ctttgtgtgcttttgttataca 227  Q
    ||||||||| ||||| ||||||    
T  43609655 ctttgtgtggttttgctataca 43609634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 11 - 198
Target Start/End: Complemental strand, 30631553 - 30631363
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 109  Q
    ||||||||||||| || ||||||| | ||||||||||||||  ||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||    
T  30631553 caaagggtagaatctatggtttgttcatgtgtaaagcttgaaggctagagtttcttgtaaccctttgtaacactttctcatattggattggagagctgct 30631454  T
Q  110 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgctt 198  Q
    |||||||  ||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  30631453 ctctcccccagattaggccacattggctgaactgagtcaacaatcttcttggtgttttgttcttcctttcttacttatcttgtttatgctt 30631363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 25 - 227
Target Start/End: Original strand, 37556575 - 37556782
Alignment:
Q  25 tagggtttgt-cttgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgctctct--cccagat 120  Q
    |||||||||| | |||||||||||||||| ||||||  | |||| ||||||||||||||||||| ||||||||||||||||||||||||||  |||||||    
T  37556575 tagggtttgttcatgtgtaaagcttgataagctaga--tacttgtaaccttttgtaacactttcacatattggattggagagctgctctctcccccagat 37556672  T
Q  121 taggccatattggctgaactgggtcaacaatctt-ctcggtgttttgttctt--cctttcttgcttatcttgtttatgcttgttagctctttgtgtgctt 217  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||||  | |||   | ||||||||||||||||||||||||||| ||||| ||    
T  37556673 taggccacattggctgaactgggtcaacaatcttgctcggtgttttgttctttccatttaccgtttatcttgtttatgcttgttagctcttagtgtggtt 37556772  T
Q  218 ttgttataca 227  Q
    ||| ||||||    
T  37556773 ttgctataca 37556782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 25 - 227
Target Start/End: Original strand, 37561397 - 37561604
Alignment:
Q  25 tagggtttgt-cttgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgctctct--cccagat 120  Q
    |||||||||| | |||||||||||||||| ||||||  | |||| ||||||||||||||||||| ||||||||||||||||||||||||||  |||||||    
T  37561397 tagggtttgttcatgtgtaaagcttgataagctaga--tacttgtaaccttttgtaacactttcacatattggattggagagctgctctctcccccagat 37561494  T
Q  121 taggccatattggctgaactgggtcaacaatctt-ctcggtgttttgttctt--cctttcttgcttatcttgtttatgcttgttagctctttgtgtgctt 217  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||||  | |||   | ||||||||||||||||||||||||||| ||||| ||    
T  37561495 taggccacattggctgaactgggtcaacaatcttgctcggtgttttgttctttccatttaccgtttatcttgtttatgcttgttagctcttagtgtggtt 37561594  T
Q  218 ttgttataca 227  Q
    ||| ||||||    
T  37561595 ttgctataca 37561604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 11 - 219
Target Start/End: Original strand, 28807514 - 28807724
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 109  Q
    ||||||||||| | |||||||||| | |||||||||||||| |||||||  |||||| ||||||||||||||||| | ||||||||||||||||||||||    
T  28807514 caaagggtaga-tctagggtttgttcatgtgtaaagcttgaaagctaga--ttcttgtaaccttttgtaacactt-cacatattggattggagagctgct 28807609  T
Q  110 ctctccc--agattaggccatattggctgaactgggtcaacaatctt-ctcggtgttttgttctt--cctttcttgcttatcttgtttatgcttgttagc 204  Q
    |||||||  ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||  | |||   | |||||||||||||||||||||||    
T  28807610 ctctcccccagattaggccacattggctgaactgggtcaacaatcttgctcggtgttttgttctttccttttaccgtttatcttgtttatgcttgttagc 28807709  T
Q  205 tctttgtgtgctttt 219  Q
    |||||| ||| ||||    
T  28807710 tctttgagtggtttt 28807724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 61 - 192
Target Start/End: Complemental strand, 38192270 - 38192135
Alignment:
Q  61 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 157  Q
    |||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |     
T  38192270 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggccatattggctgaactgggtcaacaatcttttt 38192171  T
Q  158 ggtgt-tttgttcttcctttcttgcttatcttgttt 192  Q
    ||||| ||||||||||||||||||||||||||||||    
T  38192170 ggtgtgtttgttcttcctttcttgcttatcttgttt 38192135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 61 - 192
Target Start/End: Complemental strand, 38219495 - 38219360
Alignment:
Q  61 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 157  Q
    |||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |     
T  38219495 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggccatattggctgaactgggtcaacaatcttttt 38219396  T
Q  158 ggtgt-tttgttcttcctttcttgcttatcttgttt 192  Q
    ||||| ||||||||||||||||||||||||||||||    
T  38219395 ggtgtgtttgttcttcctttcttgcttatcttgttt 38219360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 30 - 220
Target Start/End: Original strand, 31396951 - 31397144
Alignment:
Q  30 tttgtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctgctctctccc--agattaggc 125  Q
    ||||||||||||||||||||||| ||||||  |||||| ||| |||||||||||| ||| |||||||||||||||||||||||||||||  |||||||||    
T  31396951 tttgtcttgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccagattaggc 31397048  T
Q  126 catattggctgaactgggtcaacaatctt-ctcggtgt---tttgttcttcctttcttgcttatcttgtttatgcttgttagctctttgtgtgcttttg 220  Q
    || |||||||||||||||||||||||||| ||||||||   |||||| ||| ||| | | ||||||||  ||||||||||||||||| ||||| |||||    
T  31397049 cacattggctgaactgggtcaacaatcttgctcggtgtttgtttgtt-ttcttttatcgtttatcttg--tatgcttgttagctcttagtgtggttttg 31397144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 61 - 192
Target Start/End: Complemental strand, 35387759 - 35387624
Alignment:
Q  61 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 157  Q
    |||||| |||| |||||||||||||| ||||| | ||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||| |     
T  35387759 ttcttgtaaccctttgtaacactttcatcatagtagattggagagctgctctctcccccagattaggccatattggctgaattgggtcaacaatcttttt 35387660  T
Q  158 ggtgt-tttgttcttcctttcttgcttatcttgttt 192  Q
    ||||| ||||||||||||||||||||||||| ||||    
T  35387659 ggtgtgtttgttcttcctttcttgcttatctcgttt 35387624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 30 - 220
Target Start/End: Original strand, 31401808 - 31402001
Alignment:
Q  30 tttgtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctgctctct--cccagattaggc 125  Q
    ||||||||||||||||||||||| ||||||  |||||| ||| |||||||||||| ||| ||||||||||||||||||||||||||  |||| |||||||    
T  31401808 tttgtcttgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccatattaggc 31401905  T
Q  126 catattggctgaactgggtcaacaatctt-ctcggtgttttgttc---ttcctttcttgcttatcttgtttatgcttgttagctctttgtgtgcttttg 220  Q
    || |||||||||||||||||||||||||| ||||||| |||||||   ||| ||| | | ||||||||  ||||||||||||||||| ||||| |||||    
T  31401906 cacattggctgaactgggtcaacaatcttgctcggtg-tttgttcgttttcttttatcgtttatcttg--tatgcttgttagctcttagtgtggttttg 31402001  T

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Target: chr5; HSP #19
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 71 - 228
Target Start/End: Complemental strand, 2785461 - 2785301
Alignment:
Q  71 cttttgtaacactttctcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatctt-ctcggtgttttgt 167  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||| ||||||| |||||    
T  2785461 cttttgtaacacattcacatattggattggagagctgctctctcccccagattaggccacattggctgaactgggtcaacaatcttgctcggtg-tttgt 2785363  T
Q  168 tctt---cctttcttgcttatcttgtttatgcttgttagctctttgtgtgcttttgttatacat 228  Q
    ||||   | ||| | | ||||||||  ||||||||||||||||| ||||| ||||| |||||||    
T  2785362 tcttttccttttatcgtttatcttg--tatgcttgttagctcttagtgtggttttgctatacat 2785301  T

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Target: chr5; HSP #20
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 61 - 192
Target Start/End: Complemental strand, 24135945 - 24135809
Alignment:
Q  61 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 157  Q
    |||||| |||| |||||||||||||| || || || |||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||     
T  24135945 ttcttgtaaccctttgtaacactttcatcttagtgcattggatagctgctctctcccccagattaggccatattggctgaactgggtcaacaatcttctt 24135846  T
Q  158 ggtgt-tttgttcttcc-tttcttgcttatcttgttt 192  Q
    ||||| ||||||||||| ||||| |||||||||||||    
T  24135845 ggtgtgtttgttcttccttttctagcttatcttgttt 24135809  T

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Target: chr5; HSP #21
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 228
Target Start/End: Complemental strand, 33791449 - 33791242
Alignment:
Q  25 tagggtttgt-cttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctgctctctccc--aga 119  Q
    |||||||||| | |||||||||||||| | ||||||  |||||| ||| |||||||||||| ||| |||||||||||||||||||||||| ||||  |||    
T  33791449 tagggtttgttcatgtgtaaagcttgaaaagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctttcccccaga 33791352  T
Q  120 ttaggccatattggctgaactgggtcaacaatctt-ctcggtgttttgttctt---cctttcttgcttatcttgtttatgcttgttagctctttgtgtgc 215  Q
    |||||||| |||||||||||||||||||||||||| ||||||| |||||||||   | ||| | | ||||||||  |||||||||||||||| | ||||     
T  33791351 ttaggccacattggctgaactgggtcaacaatcttgctcggtg-tttgttcttttccttttatcgtttatcttg--tatgcttgttagctctatatgtgg 33791255  T
Q  216 ttttgttatacat 228  Q
    ||||| |||||||    
T  33791254 ttttgctatacat 33791242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 25 - 164
Target Start/End: Complemental strand, 33768312 - 33768169
Alignment:
Q  25 tagggtttgt-cttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctgctctctccc--aga 119  Q
    |||||||||| | |||||||||||||| | ||||||  |||||| ||| |||||||||||| ||| ||||||||||||||||||||||||| |||  |||    
T  33768312 tagggtttgttcatgtgtaaagcttgaaaagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctcccccccaga 33768215  T
Q  120 ttaggccatattggctgaactgggtcaacaatctt-ctcggtgttt 164  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||    
T  33768214 ttaggccacattggctgaactgggtcaacaatcttgctcggtgttt 33768169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 9353344 - 9353429
Alignment:
Q  73 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||| ||||| |||||||||||||||||||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  9353344 tttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 9353429  T

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Target: chr5; HSP #24
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 36932362 - 36932447
Alignment:
Q  73 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||| ||||| |||||||||||||||||||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  36932362 tttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 36932447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 10281838 - 10281751
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| ||||| |||||||||||||||||||||  ||||||| ||| |||||||| | |||||||||||||||||||    
T  10281838 cttttgtaacactttcatcatagtggattggagagctgctctctcccccagatcaggtcatattggaccgaactgggtcaacaatctt 10281751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 154
Target Start/End: Complemental strand, 15464617 - 15464532
Alignment:
Q  73 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||| ||||| |||||||||||||||||||||  ||||||||||  |||||||| | |||||||||||||||||||    
T  15464617 tttgtaacactttcatcatagtggattggagagctgctctctcccccagattagatcatattggaccgaactgggtcaacaatctt 15464532  T

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Target: chr5; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 19588833 - 19588746
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| ||||| |||||||||| |||||||||||||  |||||||  |||||||| | |||||||||||||||||||    
T  19588833 cttttgtaacactttcatcatagtggattggagggctgctctctccctaagattagttcatattggaccgaactgggtcaacaatctt 19588746  T

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Target: chr5; HSP #28
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 153
Target Start/End: Original strand, 11916982 - 11917068
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatct 153  Q
    |||||||||||||||| | ||| |||||||||||||||||||||  |||| |||||| |||||||| | ||||||||||||||||||    
T  11916982 cttttgtaacactttcattatagtggattggagagctgctctctcccccatattaggtcatattggaccgaactgggtcaacaatct 11917068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 154
Target Start/End: Complemental strand, 14520315 - 14520230
Alignment:
Q  73 tttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||| ||||| ||||||| |||||||||||| |||  |||||||| |||||||| | |||||||||||||||||||    
T  14520315 tttgtaacactttcatcatagtggattgaagagctgctctcccccctagattaggtcatattggaccgaactgggtcaacaatctt 14520230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 3880386 - 3880299
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| ||||| |||||||||||||||||||||  | ||||||||| |||||||| | ||||||  |||||||||||    
T  3880386 cttttgtaacactttcatcatagtggattggagagctgctctctgcctcagattaggtcatattggacagaactgaatcaacaatctt 3880299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 17003970 - 17004057
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||| || |||||| ||||| ||||||| |||||||||||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  17003970 cttttgaaatactttcatcatagtggattgaagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 17004057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 12084187 - 12084269
Alignment:
Q  73 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaat 151  Q
    |||||||||||||| ||||| |||||||||||||||||||||  |||| |||||| |||| ||| | ||||||||||||||||    
T  12084187 tttgtaacactttcatcatagtggattggagagctgctctctgccccatattaggtcatagtggaccgaactgggtcaacaat 12084269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 28832343 - 28832259
Alignment:
Q  74 ttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    ||||||||||||| || || |||||||||| ||||||||||  ||||||||||| |||||||| | |||| ||||||||||||||    
T  28832343 ttgtaacactttcatcttagtggattggagggctgctctctcccccagattaggtcatattggaccgaaccgggtcaacaatctt 28832259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 42127423 - 42127507
Alignment:
Q  74 ttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggct-gaactgggtcaacaatctt 154  Q
    ||||||||||||| || || |||||||| | |||||||||||||  |||||||| |||||| | | |||||||||||||||||||    
T  42127423 ttgtaacactttcatcttagtggattggggggctgctctctcccccagattaggtcatattagatcgaactgggtcaacaatctt 42127507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 11 - 225
Target Start/End: Original strand, 9583 - 9796
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 109  Q
    ||||||||||| | |||||||||| | ||||||||||||||  |||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9583 caaagggtaga-tctagggtttgttcatgtgtaaagcttgaaggctagag--tcttgtaaccttttgtaacactttctcatattggattggagagctgct 9679  T
Q  110 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgcttgttagctct 207  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  9680 ctctcccccagattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgcttgttagctc- 9778  T
Q  208 ttgtgtgcttttgttata 225  Q
    ||||||| ||||| ||||    
T  9779 ttgtgtggttttgctata 9796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 11 - 219
Target Start/End: Complemental strand, 3814168 - 3813959
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 109  Q
    ||||||||||| | |||||||||| | |||||||||||||| ||||||||  ||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  3814168 caaagggtaga-tctagggtttgttcatgtgtaaagcttgaaagctagag--tcttgtaaccttttgtaacactttcacatattggattggagagctgct 3814072  T
Q  110 ctctccc--agattaggccatattggctgaactgggtcaacaatctt-ctcggtgttttgttcttcctttcttgcttatcttgtttatgcttgttagctc 206  Q
    |||||||  |||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3814071 ctctcccccagattaggccatattggctgaactgggtcaacaatcttgcatggtgttttgttcttcctttcttgcttatcttgtttatgcttgttagctc 3813972  T
Q  207 tttgtgtgctttt 219  Q
    |||||||| ||||    
T  3813971 tttgtgtggtttt 3813959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 51520603 - 51520383
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 109  Q
    ||||||||||||| |||||||||| | ||||||||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  51520603 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaaccttttgtaacactttctcatattggattggagagctgct 51520505  T
Q  110 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcc-tttcttgcttatcttgtttatgc-ttgttagct 205  Q
    |||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |  |||||||||||||||| |||||| ||    
T  51520504 ctctcccccagattaggccatattggcagaactgggtcaacaatcttctcggtgttttgttcttccttttatcacttatcttgtttatgctttgttatct 51520405  T
Q  206 ctttgtgtgcttttgttataca 227  Q
    |||||| || ||||| ||||||    
T  51520404 ctttgtatggttttgctataca 51520383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 25 - 227
Target Start/End: Original strand, 56146664 - 56146870
Alignment:
Q  25 tagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgctctctccc--agatt 121  Q
    |||||||||| | ||||||||||||||  ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  56146664 tagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagatt 56146762  T
Q  122 aggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcc-tttcttgcttatcttgtttatgc-ttgttagctctttgtgtgctttt 219  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||| ||| |  |||||||||||||||| |||||| ||||||||||| ||||    
T  56146763 aggccatattggctgaactggaccaacaatcttctcggtgttttgttcttccttttatcacttatcttgtttatgctttgttatctctttgtgtggtttt 56146862  T
Q  220 gttataca 227  Q
    | ||||||    
T  56146863 gctataca 56146870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 24742087 - 24741875
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagctgc 108  Q
    ||||||||||||| |||||||||| ||||||||| ||||||  ||||  | |||||| |||| |||||||||||||| ||||||||||||||||||||||    
T  24742087 caaagggtagaatctagggtttgttcttgtgtaa-gcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgc 24741989  T
Q  109 tctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagct 205  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||| || ||    
T  24741988 tctctcccccagattaggccatattggctgaactgggtcaacaatcttcttggtgttttgttcttcctttcttgcttatcttgttt-tgctttggtatct 24741890  T
Q  206 ctttgtgtgcttttg 220  Q
    ||||||||| |||||    
T  24741889 ctttgtgtggttttg 24741875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 9224346 - 9224565
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 109  Q
    ||||||||||| | |||||||||| | ||||||||||||||  ||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||    
T  9224346 caaagggtagagtctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttctaaccttttgtaacactttctcatattggattggagagctgct 9224444  T
Q  110 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttctt-gcttatcttgtttatgctt-gttagct 205  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||| ||||| | || ||    
T  9224445 ctctcccccagattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttccttttaccgcttatcttgttt-tgctttggtatct 9224543  T
Q  206 ctttgtgtgcttttgttataca 227  Q
    ||||||||| ||||| ||||||    
T  9224544 ctttgtgtggttttgctataca 9224565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 11 - 171
Target Start/End: Original strand, 45357236 - 45357397
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 109  Q
    ||||||||||||| |||||||||| | |||||||||||||| ||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  45357236 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaagctagag--tcttgtaaccttttgtaacactttctcatattggattggagagctgct 45357333  T
Q  110 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttctt 171  Q
    |||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45357334 ctctcccccagattatgccatattggctgaactgggtcaacaatcttctcggtgttttgttctt 45357397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 9229133 - 9229352
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 109  Q
    ||||||||||| | |||||||||| | ||||||||||||||  ||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||    
T  9229133 caaagggtagagtctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttctaaccttttgtaacactttctcatattggattggagagctgct 9229231  T
Q  110 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttctt-gcttatcttgtttatgctt-gttagct 205  Q
    |||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    ||||||||||||| ||||| | || ||    
T  9229232 ctctcccccagattaggccatattggctgaactgggttaacaatcttctcggtgttttgttcttccttttaccgcttatcttgttt-tgctttggtatct 9229330  T
Q  206 ctttgtgtgcttttgttataca 227  Q
    ||||||||| ||||| ||||||    
T  9229331 ctttgtgtggttttgctataca 9229352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 11 - 171
Target Start/End: Original strand, 45347756 - 45347918
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 109  Q
    ||||||||||||| |||||||||| | ||||||||||||||  ||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||    
T  45347756 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagaggt-cttgtaaccttttgtaacactttctcatattggattggagagctgct 45347854  T
Q  110 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttctt 171  Q
    |||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45347855 ctctcccccagattaagccatattggctgaactgggtcaacaatcttctcggtgttttgttctt 45347918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 25 - 227
Target Start/End: Complemental strand, 18855858 - 18855652
Alignment:
Q  25 tagggtttgt-cttgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgctctctccc--agat 120  Q
    |||||||||| | |||||||||||||||| |||||||  ||||| ||||||||||||||||| | |||||||||||||||||||||||||||||  ||||    
T  18855858 tagggtttgttcatgtgtaaagcttgataagctagag--tcttgtaaccttttgtaacactt-cacatattggattggagagctgctctctcccccagat 18855762  T
Q  121 taggccatattggctgaactgggtcaacaatctt-ctcggtgttttgttctt--cctttcttgcttatcttgtttatgcttgttagctctttgtgtgctt 217  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||  | |||   | ||||||||||||||||||||||||||||||||| ||    
T  18855761 taggccatattggctgaactgggtcaacaatcttgctcggtgttttgttctttccttttaccgtttatcttgtttatgcttgttagctctttgtgtggtt 18855662  T
Q  218 ttgttataca 227  Q
    ||| ||||||    
T  18855661 ttgctataca 18855652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 61 - 220
Target Start/End: Complemental strand, 29760738 - 29760576
Alignment:
Q  61 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 157  Q
    |||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||     
T  29760738 ttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctctcccccagattaggccatattggctgaactgggtcaacaatcttctt 29760639  T
Q  158 ggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctctttgtgtgcttttg 220  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||  ||||||||||| |||||    
T  29760638 ggtgttttgttcttcctttcttgcttatcttgttt-tgctttgttctctctttgtgtggttttg 29760576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 11 - 154
Target Start/End: Complemental strand, 5732809 - 5732666
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 109  Q
    ||||||||||| | |||||||||| | |||||||||||||| ||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5732809 caaagggtaga-tctagggtttgttcatgtgtaaagcttgaaagctagag--tcttgtaaccttttgtaacactttctcatattggattggagagctgct 5732713  T
Q  110 ctct--cccagattaggccatattggctgaactgggtcaacaatctt 154  Q
    ||||  |||||||||||||||||||||||||||||||||||||||||    
T  5732712 ctctcccccagattaggccatattggctgaactgggtcaacaatctt 5732666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 74 - 189
Target Start/End: Original strand, 28468542 - 28468660
Alignment:
Q  74 ttgtaacactttc-tcatattggattggagagctgctctctcc--cagattaggccatattggctgaactgggtcaacaatcttctcggtgt-tttgttc 169  Q
    ||||||||||||| ||||| |||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||| | ||||| |||||||    
T  28468542 ttgtaacactttcatcatagtggattggagagctgctctctcctccagattaggtcatattggctgaactgggtcaacaatctt-ttggtgtgtttgttc 28468640  T
Q  170 ttcctttcttgcttatcttg 189  Q
    ||||||||||||||||||||    
T  28468641 ttcctttcttgcttatcttg 28468660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 61 - 188
Target Start/End: Original strand, 31985634 - 31985764
Alignment:
Q  61 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctct-cccagattaggccatattgg-ctgaactgggtcaacaatcttctc 157  Q
    |||||| |||| |||||||||||||| ||||| ||||||||||||||||||||| ||||||||||| |||||||| | ||||||||||||||||||| |     
T  31985634 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctccccagattaggtcatattggaccgaactgggtcaacaatctt-tt 31985732  T
Q  158 ggtgt-tttgttcttcctttcttgcttatctt 188  Q
    ||||| ||||||||||||||||||||||||||    
T  31985733 ggtgtgtttgttcttcctttcttgcttatctt 31985764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 10047466 - 10047379
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| ||||| |||||||||| ||||||||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  10047466 cttttgtaacactttcatcatagtggattggagggctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 10047379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 16623303 - 16623390
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctctc--ccagattaggccatattg-gctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||  |||||||||| |||||||  | |||||||||||||||||||    
T  16623303 cttttgtaacactttcatcatagtggattggagagctgctctctcctccagattaggtcatattgaaccgaactgggtcaacaatctt 16623390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 39246081 - 39245994
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| ||||| |||||||||| ||||||||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  39246081 cttttgtaacactttcatcatagtggattggagggctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 39245994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 5396683 - 5396768
Alignment:
Q  73 tttgtaacactttc-tcatattggattggagagctgctctctc--ccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||| ||||||||| ||||| ||||||||||||||||||||||  |||||||||| |||||||| | |||||||||||||||||||    
T  5396683 tttgcaacactttcatcatagtggattggagagctgctctctcctccagattaggtcatattggaccgaactgggtcaacaatctt 5396768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 36315241 - 36315326
Alignment:
Q  73 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||| ||||| |||||||||||||||||||||  ||||||||||| |||||||| | |||||||||||||| ||||    
T  36315241 tttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacattctt 36315326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 36329450 - 36329535
Alignment:
Q  73 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||| ||||| |||||||||||||||||||||  ||||||||||| |||||||| | |||||||||||||| ||||    
T  36329450 tttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacattctt 36329535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 38152449 - 38152536
Alignment:
Q  71 cttttgtaacactttctc-atattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| | ||| |||||||||||||||||||||  ||||||||| | |||||||| | |||||||||||||||||||    
T  38152449 cttttgtaacactttcaccatagtggattggagagctgctctctcccccagattatgtcatattggaccgaactgggtcaacaatctt 38152536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 149
Target Start/End: Original strand, 6743425 - 6743507
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaaca 149  Q
    |||||||||||||||| ||||| |||||||||| |||||||||||||  |||||||| |||||||| | ||||||||||||||    
T  6743425 cttttgtaacactttcatcatagtggattggagggctgctctctcccgtagattaggtcatattggaccgaactgggtcaaca 6743507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 153
Target Start/End: Complemental strand, 5143345 - 5143260
Alignment:
Q  72 ttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatct 153  Q
    ||||||||||||||| ||||| ||| |||||||||||||||||  ||||||||||| |||||||| | ||||| ||||||||||||    
T  5143345 ttttgtaacactttcatcatagtgggttggagagctgctctctcccccagattaggtcatattggaccgaactaggtcaacaatct 5143260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 5269204 - 5269288
Alignment:
Q  74 ttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    ||||||||||||| ||||| |||||||||| ||||||||||  ||||||||||| |||||||| | ||||| |||||||||||||    
T  5269204 ttgtaacactttcatcatagtggattggagggctgctctctcccccagattaggtcatattggaccgaactaggtcaacaatctt 5269288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 3796529 - 3796616
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| ||||| |||||| ||||| |||||||||||  | |||||| |||||||| | |||||||||||||||||||    
T  3796529 cttttgtaacactttcatcatagtggattagagagttgctctctcccccatattaggtcatattggacggaactgggtcaacaatctt 3796616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 153
Target Start/End: Complemental strand, 5147763 - 5147678
Alignment:
Q  72 ttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatct 153  Q
    ||||||||||||||| ||||| |||| ||||||||||||| |||||  | |||||| |||||||| | ||||||||||||||||||    
T  5147763 ttttgtaacactttcatcataatggactggagagctgctccctcccccaaattaggtcatattggaccgaactgggtcaacaatct 5147678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 153
Target Start/End: Complemental strand, 3777634 - 3777550
Alignment:
Q  73 tttgtaacactttc-tcatattggattggagagctgctctctc--ccagattaggccatattgg-ctgaactgggtcaacaatct 153  Q
    |||||||||||||| ||||| |||||||||||||| |||||||  | ||||||||  ||||||| | ||||||||||||||||||    
T  3777634 tttgtaacactttcatcatagtggattggagagctactctctcctctagattaggttatattggaccgaactgggtcaacaatct 3777550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 150
Target Start/End: Original strand, 16630690 - 16630773
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctctc--ccagattaggccatattgg-ctgaactgggtcaacaa 150  Q
    |||||||||||||||| ||||| ||||||||||||||| ||||||  |||||||| | |||||||| | ||||| |||||||||    
T  16630690 cttttgtaacactttcatcatagtggattggagagctgttctctcctccagattatgtcatattggaccgaactaggtcaacaa 16630773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 24333896 - 24333809
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||| ||| ||||| |||||||||||||||||||||  |||| |||||| |||||||| | |||||| || |||||||||    
T  24333896 cttttgtaacacgttcatcatagtggattggagagctgctctctcccccaaattaggtcatattggaccgaactgagttaacaatctt 24333809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 154
Target Start/End: Complemental strand, 54867269 - 54867184
Alignment:
Q  72 ttttgtaacactttc-tcatattggattggagagctgctctctccc-agattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||| |||| ||||| | ||||| || ||||||||||||| ||| |||| |||||||| | |||||||||||||||||||    
T  54867269 ttttgtaacattttcatcatagttgattgaagggctgctctctccccagactaggtcatattggaccgaactgggtcaacaatctt 54867184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 131; Significance: 4e-68; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 11 - 225
Target Start/End: Original strand, 24024266 - 24024484
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 109  Q
    ||||||||||||| |||||||||| | ||||||||||||||  |||||||  ||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  24024266 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag--tcttgtaacattttgtaacactttctcatattggattggagagctgct 24024363  T
Q  110 ctct--cccagattaggccatattggctgaactgggtcaacaatctt-ctcggtg-ttttgttcttcc-tttcttgcttatcttgtttatgcttgttagc 204  Q
    ||||  |||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  24024364 ctctcccccagattaggccatattggctgaactgggtcaacaatcttgttcggtgtttttgttcttccttttcttgcttatcttgtttatgcttgttagc 24024463  T
Q  205 tctttgtgtgcttttgttata 225  Q
    |||||||||| ||||| ||||    
T  24024464 tctttgtgtggttttgctata 24024484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 11 - 198
Target Start/End: Original strand, 31109523 - 31109713
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 109  Q
    ||||||||||||| |||||||||| | |||| |||||||||  |||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31109523 caaagggtagaatctagggtttgttcatgtgcaaagcttgaaggctagag--tcttgtaaccttttgtaacactttctcatattggattggagagctgct 31109620  T
Q  110 ctctccc--agattaggccatattggctgaactgggtcaacaatctt-ctcggtgttttgttcttcc-tttcttgcttatcttgtttatgctt 198  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||| |||||||||||||||||    
T  31109621 ctctcccctagattaggccatattggctgaactgggtcaacaatcttgttcggtgttttgttcttccttttcttgtttatcttgtttatgctt 31109713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 25 - 227
Target Start/End: Complemental strand, 19992445 - 19992238
Alignment:
Q  25 tagggtttgt-cttgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgctctct--cccagat 120  Q
    |||||||||| | |||||||||||||||| |||||||  ||||| ||||||||||||||||||| ||||||||||||||||||||||||||  |||||||    
T  19992445 tagggtttgttcatgtgtaaagcttgataagctagag--tcttgtaaccttttgtaacactttcacatattggattggagagctgctctctcccccagat 19992348  T
Q  121 taggccatattggctgaactgggtcaacaatctt-ctcggtgttttgttctt--cctttcttgcttatcttgtttatgcttgttagctctttgtgtgctt 217  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||  | |||   | ||||||||||||||||||||||||||||||||| ||    
T  19992347 taggccatattggctgaactgggtcaacaatcttgctcggtgttttgttctttccttttaccgtttatcttgtttatgcttgttagctctttgtgtggtt 19992248  T
Q  218 ttgttataca 227  Q
    ||| ||||||    
T  19992247 ttgctataca 19992238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 12397057 - 12396838
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 109  Q
    ||||||||||||| |||||||||| | ||||||||| || |  ||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |    
T  12397057 caaagggtagaatctagggtttgttcatgtgtaaagattaaaggctagag-ttcttgtaaccttttgtaacactttctcatattggattggagagctgtt 12396959  T
Q  110 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttctt-cctttcttgcttatcttgtttatgc-ttgttagct 205  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||   ||||||||||||| ||| ||| || ||    
T  12396958 ctctcccccagattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttccctttaccgcttatcttgttt-tgctttggtatct 12396860  T
Q  206 ctttgtgtgcttttgttataca 227  Q
    ||||||||| ||||| ||||||    
T  12396859 ctttgtgtggttttgctataca 12396838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 12406477 - 12406258
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 109  Q
    ||||||||||||| |||||||||| | ||||||||||||||  ||||||| |||||| |||||||||||||||||||||||||||||||||||||||  |    
T  12406477 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaaccttttgtaacactttctcatattggattggagagctatt 12406379  T
Q  110 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttctt-gcttatcttgtttatgctt-gttagct 205  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    ||||||||||||| ||||| | || ||    
T  12406378 ctctcccccagattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttctttcttttaccgcttatcttgttt-tgctttggtatct 12406280  T
Q  206 ctttgtgtgcttttgttataca 227  Q
    ||||||||| ||||| ||||||    
T  12406279 ctttgtgtggttttgctataca 12406258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 34 - 220
Target Start/End: Original strand, 20357521 - 20357709
Alignment:
Q  34 tcttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgctctct--cccagattaggccatatt 131  Q
    |||||||||||||||||  ||||  | |||||| |||| |||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||    
T  20357521 tcttgtgtaaagcttgaaggctattgtttcttgtaaccctttgtaacactttctcatattggattggagagctgctctctcccccaaattaggccatatt 20357620  T
Q  132 ggctgaactgggtcaacaatcttctcggtgttttgttcttcc-tttcttgcttatcttgtttatgc-ttgttagctctttgtgtgcttttg 220  Q
    ||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||  ||| |||||| ||||||||||| |||||    
T  20357621 ggctgaactgggtcaacaatcttcttggtattttgttcttccttttcttgcttatcttgtt--tgctttgttatctctttgtgtggttttg 20357709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 68 - 176
Target Start/End: Complemental strand, 4866819 - 4866709
Alignment:
Q  68 aaccttttgtaacactttctcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgtttt 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4866819 aaccttttgtaacactttctcatattggattggagagctgctctctcccccagattaggccatattggctgaactgggtcaacaatcttctcggtgtttt 4866720  T
Q  166 gttcttccttt 176  Q
    |||||||||||    
T  4866719 gttcttccttt 4866709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 2058108 - 2057927
Alignment:
Q  15 gggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctc 112  Q
    ||||||||| ||||| |||| ||||||||| ||||||  ||||  | |||||| |||| |||||||||||||| ||||||||||||||||||||||||||    
T  2058108 gggtagaatctagggcttgttcttgtgtaa-gcttgaatgctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctc 2058010  T
Q  113 tccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcc-tttcttgcttatcttgttt 192  Q
    ||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||    
T  2058009 tcccccagattaggccatattggctgaactgggtcaacaatcttcttggtgttttgttcttccttttattgcttatcttgttt 2057927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 30 - 214
Target Start/End: Original strand, 24266160 - 24266348
Alignment:
Q  30 tttgtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctgctctctccc--agattaggc 125  Q
    ||||||||||||||||||||||| ||||||  |||||| ||| |||||||||||| ||| |||||||||||||||||||||||||||||  |||||||||    
T  24266160 tttgtcttgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccagattaggc 24266257  T
Q  126 catattggctgaactgggtcaacaatctt-ctcggtgttttgttc---ttcctttcttgcttatcttgtttatgcttgttagctctttgtgtg 214  Q
    || |||||||||||||||||||||||||| || ||||||||||||   ||||||| | | ||||||||  ||||||||||||||||| |||||    
T  24266258 cacattggctgaactgggtcaacaatcttgcttggtgttttgttcgttttcctttatcgtttatcttg--tatgcttgttagctcttagtgtg 24266348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 61 - 192
Target Start/End: Complemental strand, 21639905 - 21639770
Alignment:
Q  61 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 157  Q
    |||||| |||| |||||||||||||| | ||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |     
T  21639905 ttcttgtaaccctttgtaacactttcattatagtggattggagagctgctctctcccccagattaggccatattggctgaactgggtcaacaatcttttt 21639806  T
Q  158 ggtgt-tttgttcttcctttcttgcttatcttgttt 192  Q
    ||||| ||||||||||||||||||||||||||||||    
T  21639805 ggtgtgtttgttcttcctttcttgcttatcttgttt 21639770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 11 - 192
Target Start/End: Original strand, 1533393 - 1533579
Alignment:
Q  11 caaagggtagaatttagggtttgt--cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagctg 107  Q
    ||||||||||||| ||||  ||||  ||||||||| |||||  |||||  | |||||| |||| |||||||||||||| |||||||||||||||||| ||    
T  1533393 caaagggtagaatctaggtcttgtttcttgtgtaa-gcttgcaagctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagatg 1533491  T
Q  108 ctctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgt-tttgttcttcctttcttgcttatcttgttt 192  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||| | ||||| ||||||||| ||||||||||||| ||||||    
T  1533492 ctctctcccccagattaggccatattggctgaactgggtcaacaatcttattggtgtgtttgttctttctttcttgcttatattgttt 1533579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 30 - 214
Target Start/End: Original strand, 24261281 - 24261469
Alignment:
Q  30 tttgtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctgctctctccc--agattaggc 125  Q
    ||||||||||||||||||||||| ||||||  |||||| ||| |||||||||||| ||| |||||||||||||||||||||||||||||  |||||||||    
T  24261281 tttgtcttgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccagattaggc 24261378  T
Q  126 catattggctgaactgggtcaacaatctt-ctcggtgttttgttc---ttcctttcttgcttatcttgtttatgcttgttagctctttgtgtg 214  Q
    || |||||||||||||||||||||||||| || ||||||||||||   ||| ||| | | ||||||||  ||||||||||||||||| |||||    
T  24261379 cacattggctgaactgggtcaacaatcttgcttggtgttttgttcgttttcttttatcgtttatcttg--tatgcttgttagctcttagtgtg 24261469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 61 - 192
Target Start/End: Complemental strand, 18408860 - 18408726
Alignment:
Q  61 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 157  Q
    |||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |     
T  18408860 ttcttgtaaccctttgtaacactttcatcatactggattggagagctgctctctcccccagattaggccatattggctgaactgggtcaacaatctt-tt 18408762  T
Q  158 ggtgt-tttgttcttcctttcttgcttatcttgttt 192  Q
    ||||| ||||||||| ||||||||||||||||||||    
T  18408761 ggtgtgtttgttctttctttcttgcttatcttgttt 18408726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 61 - 192
Target Start/End: Complemental strand, 21646103 - 21645968
Alignment:
Q  61 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 157  Q
    |||||| |||| ||| |||||||||| ||||| ||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||| |     
T  21646103 ttcttgtaaccctttttaacactttcatcatagtggattggagagctgctctcttccctagattaggccatattggctgaactgggtcaacaatcttttt 21646004  T
Q  158 ggtgt-tttgttcttcctttcttgcttatcttgttt 192  Q
    ||||| ||||||||||||||||||||||||||||||    
T  21646003 ggtgtgtttgttcttcctttcttgcttatcttgttt 21645968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 62 - 227
Target Start/End: Original strand, 21812229 - 21812398
Alignment:
Q  62 tcttgcaaccttttgtaacactttctcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatctt-ctcg 158  Q
    ||||| |||||||||||| |||| | |||||||||||||| ||||||||||||||  ||||||||||| |||||||||||||||||||||||||| ||||    
T  21812229 tcttggaaccttttgtaagactt-cacatattggattggaaagctgctctctcccccagattaggccacattggctgaactgggtcaacaatcttgctcg 21812327  T
Q  159 gtgttttgttc--ttcctttcttgcttatcttgtttatgcttgttagctctttgtgtgcttttgttataca 227  Q
    |||||||||||  ||| |||   | ||||||||||||||||||||| ||||||||||| ||||| ||||||    
T  21812328 gtgttttgttcttttcttttaccgtttatcttgtttatgcttgttaactctttgtgtggttttgctataca 21812398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 61 - 189
Target Start/End: Complemental strand, 18413736 - 18413606
Alignment:
Q  61 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc-agattaggccatattggctgaactgggtcaacaatcttctcg 158  Q
    |||||| |||| |||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |    
T  18413736 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctccccagattaggccatattggctgaactgggtcaacaatctt-ttg 18413638  T
Q  159 gtgt-tttgttcttcctttcttgcttatcttg 189  Q
    |||| ||||||||| |||||||||||||||||    
T  18413637 gtgtgtttgttctttctttcttgcttatcttg 18413606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 30 - 214
Target Start/End: Complemental strand, 16880199 - 16880012
Alignment:
Q  30 tttgtcttgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgctctctccc--agattaggcc 126  Q
    ||||||||||||||||||||||| ||||||  |||||| |||  ||||||| || ||| |||||||||||||||||||||||||||||  ||||||||||    
T  16880199 tttgtcttgtgtaaagcttgataagctaga--ttcttgtaactctttgtaaaacattcacatattggattggagagctgctctctcccccagattaggcc 16880102  T
Q  127 atattggctgaactgggtcaacaatctt-ctcggtgttttgttc---ttcctttcttgcttatcttgtttatgcttgttagctctttgtgtg 214  Q
    | |||||||||||||||||||||||||| || ||||||||||||   ||| ||| | | ||||||||  ||||||||||||||||| |||||    
T  16880101 acattggctgaactgggtcaacaatcttgcttggtgttttgttcgttttcttttatcgtttatcttg--tatgcttgttagctcttagtgtg 16880012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 30 - 214
Target Start/End: Complemental strand, 16885055 - 16884868
Alignment:
Q  30 tttgtcttgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgctctctccc--agattaggcc 126  Q
    ||||||||||||||||||||||| ||||||  |||||| |||  ||||||| || ||| |||||||||||||||||||||||||||||  ||||||||||    
T  16885055 tttgtcttgtgtaaagcttgataagctaga--ttcttgtaactctttgtaaaacattcacatattggattggagagctgctctctcccccagattaggcc 16884958  T
Q  127 atattggctgaactgggtcaacaatctt-ctcggtgttttgttc---ttcctttcttgcttatcttgtttatgcttgttagctctttgtgtg 214  Q
    | |||||||||||||||||||||||||| || ||||||||||||   ||| ||| | | ||||||||  ||||||||||||||||| |||||    
T  16884957 acattggctgaactgggtcaacaatcttgcttggtgttttgttcgttttcttttatcgtttatcttg--tatgcttgttagctcttagtgtg 16884868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 29159890 - 29159803
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||  |||||||| |||||||| | |||||||||||||||||||    
T  29159890 cttttgtaacactttcatcatagtggattggagagctgctctctcccctagattaggtcatattggaccgaactgggtcaacaatctt 29159803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 72 - 153
Target Start/End: Complemental strand, 21983370 - 21983285
Alignment:
Q  72 ttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatct 153  Q
    ||||||||||||||| ||||| |||||||||||||||||||||  ||||||||||| |||||||| | ||||||||||||||||||    
T  21983370 ttttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatct 21983285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 46516320 - 46516407
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| ||||| |||||||||| |||||||||||||  |||||||| |||||||| | |||||||||||||||||||    
T  46516320 cttttgtaacactttcatcatagtggattggagggctgctctctcccctagattaggtcatattggaccgaactgggtcaacaatctt 46516407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 49091748 - 49091661
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| ||||| |||||||||||| ||||||||  ||||||||||| |||||||| || ||||||||||||||||||    
T  49091748 cttttgtaacactttcatcatagtggattggagagttgctctcttccccagattaggtcatattggactaaactgggtcaacaatctt 49091661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 154
Target Start/End: Complemental strand, 47263757 - 47263678
Alignment:
Q  77 taacactttc-tcatattggattggagagctgctctctcccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||| ||||| |||||||||||||||||||| |||| |||||| |||||||| | |||||||||||||||||||    
T  47263757 taacactttcatcatagtggattggagagctgctctcccccatattaggtcatattggaccgaactgggtcaacaatctt 47263678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 56034 - 55948
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctct-cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| ||||| |||||||||| |||||||||| ||||||||||| |||||||| | |||||||||||| ||||||    
T  56034 cttttgtaacactttcatcatagtggattggagggctgctctctccccagattaggtcatattggaccgaactgggtcaataatctt 55948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 153
Target Start/End: Complemental strand, 21988992 - 21988909
Alignment:
Q  72 ttttgtaacactttc-tcatattggattggagagctgctctctcccagattaggccatattgg-ctgaactgggtcaacaatct 153  Q
    ||||||||||||||| ||| | |||||||||||| |||||||  |||||||||| |||||||| | ||||||||||||||||||    
T  21988992 ttttgtaacactttcatcaaagtggattggagagttgctctcctccagattaggtcatattggaccgaactgggtcaacaatct 21988909  T

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Target: chr7; HSP #26
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 44848696 - 44848781
Alignment:
Q  73 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattg-gctgaactgggtcaacaatctt 154  Q
    |||||||||||||| ||||| |||||||||||||||||||||  ||||| ||||| |||||||  | |||||||||||||||||||    
T  44848696 tttgtaacactttcatcatagtggattggagagctgctctctcccccaggttaggtcatattgaaccgaactgggtcaacaatctt 44848781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 9190021 - 9190105
Alignment:
Q  74 ttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    ||||||||||||| || || |||||||||||||||||||||  |||||| |||| |||||||| | |||||||||||||||||||    
T  9190021 ttgtaacactttcatcttagtggattggagagctgctctctcccccagactaggtcatattggaccgaactgggtcaacaatctt 9190105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 20284173 - 20284089
Alignment:
Q  74 ttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    ||||||||||||| || || |||||||||| ||||||||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  20284173 ttgtaacactttcatcttagtggattggagggctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 20284089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 154
Target Start/End: Complemental strand, 2479421 - 2479337
Alignment:
Q  73 tttgtaacactttc-tcatattggattggagagctgctctctccc-agattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||| ||||| |||||| ||||||||||||| ||| |||||||| |||||||  | |||||||||||||||||||    
T  2479421 tttgtaacactttcatcatagtggatttgagagctgctctccccctagattaggtcatattgaaccgaactgggtcaacaatctt 2479337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 2647706 - 2647793
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatatt-ggctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| ||||| |||||||||| ||||||||||  |||||| |||| |||||| ||| ||| |||||||||||||||    
T  2647706 cttttgtaacactttcatcatagtggattggagggctgctctctcccccagaataggtcatattgggccgaattgggtcaacaatctt 2647793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 33332460 - 33332547
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattggct-gaactgggtcaacaatctt 154  Q
    |||||||||||||||| || || |||||||||| ||||||||||  ||||||||||| |||||| | | |||||||||||||||||||    
T  33332460 cttttgtaacactttcatcttagtggattggagggctgctctctcccccagattaggtcatattagatcgaactgggtcaacaatctt 33332547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 2580474 - 2580390
Alignment:
Q  74 ttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    ||||||||||||| || || |||||||||||||||||||||  |||||| |||| |||||||| | ||| |||||||||||||||    
T  2580474 ttgtaacactttcatcttagtggattggagagctgctctctcccccagactaggtcatattggaccgaattgggtcaacaatctt 2580390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 154
Target Start/End: Complemental strand, 35960901 - 35960816
Alignment:
Q  73 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattg-gctgaactgggtcaacaatctt 154  Q
    |||||||||||||| ||||| ||| |||||| ||||||||||  ||||||||||| |||||||  | ||||| |||||||||||||    
T  35960901 tttgtaacactttcatcatagtggtttggagggctgctctctcccccagattaggtcatattgaaccgaactcggtcaacaatctt 35960816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 9185178 - 9185262
Alignment:
Q  74 ttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    ||||||||||||| || || |||||||||||||| ||||||  |||||| ||||  ||||||| | |||||||||||||||||||    
T  9185178 ttgtaacactttcatcttagtggattggagagcttctctctcccccagactaggttatattggaccgaactgggtcaacaatctt 9185262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 46)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 11 - 185
Target Start/End: Original strand, 28503814 - 28503991
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 109  Q
    ||||||||||||| |||||||| | ||||||||||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28503814 caaagggtagaatctagggtttattcttgtgtaaagcttgaaggctagagtttcttgtaaccttttgtaacactttctcatattggattggagagctgct 28503913  T
Q  110 ctct--cccagattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttat 185  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28503914 ctcttccccagattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgtttat 28503991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 7167391 - 7167178
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagctgc 108  Q
    ||||||||||||| |||||||||| ||||||||| ||||||  ||||  | |||||| |||| |||||||||||||| ||||||||||||||||||||||    
T  7167391 caaagggtagaatctagggtttgttcttgtgtaa-gcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgc 7167293  T
Q  109 tctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagct 205  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||    
T  7167292 tctctcccccagattaggccatattggctgaactgggtcaacaatcttcttggtgttttgttcttcctttcttgcttatcttgtttatgctttgttatct 7167193  T
Q  206 ctttgtgtgcttttg 220  Q
    ||||||||| |||||    
T  7167192 ctttgtgtggttttg 7167178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 22173134 - 22173301
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 109  Q
    ||||||||||||| |||||||||| | ||||||||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22173134 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaaccttttgtaacactttctcatattggattggagagctgct 22173232  T
Q  110 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttccttt 176  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22173233 ctctcccccagattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttccttt 22173301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 61 - 219
Target Start/End: Original strand, 2671586 - 2671747
Alignment:
Q  61 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 157  Q
    |||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||     
T  2671586 ttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctctcccccagattaggccatattggctgaactgggtcaacaatcttctt 2671685  T
Q  158 ggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctctttgtgtgctttt 219  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||| ||||    
T  2671686 ggtgttttgttcttcctttcttgcttatcttgttt-tgctttgttatctctttgtgtggtttt 2671747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 8739017 - 8739197
Alignment:
Q  15 gggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctc 112  Q
    ||||||||| ||||| |||| ||||||||| ||||||  ||||  | |||||| |||| |||||||||||||| ||||||||||||||||||||||||||    
T  8739017 gggtagaatctagggattgttcttgtgtaa-gcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctc 8739115  T
Q  113 tccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgttt 192  Q
    ||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8739116 tcccccagattaggccatattggctgaactgggtcaacaatcttcttggtgttttgttcttcctttcttgcttatcttgttt 8739197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 9091255 - 9091435
Alignment:
Q  15 gggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctc 112  Q
    ||||||||| ||||| |||| ||||||||| ||||||  ||||  | |||||| |||| |||||||||||||| ||||||||||||||||||||||||||    
T  9091255 gggtagaatctagggattgttcttgtgtaa-gcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctc 9091353  T
Q  113 tccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgttt 192  Q
    ||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9091354 tcccccagattaggccatattggctgaactgggtcaacaatcttcttggtgttttgttcttcctttcttgcttatcttgttt 9091435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 61 - 192
Target Start/End: Original strand, 40372795 - 40372929
Alignment:
Q  61 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 157  Q
    |||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||     
T  40372795 ttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctctcccccagattaggccatattggctgaactgggtcaacaatcttctt 40372894  T
Q  158 ggtgttttgttcttcctttcttgcttatcttgttt 192  Q
    ||||||||||||||||| |||||||||||||||||    
T  40372895 ggtgttttgttcttcctatcttgcttatcttgttt 40372929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 61 - 192
Target Start/End: Complemental strand, 8477459 - 8477324
Alignment:
Q  61 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 157  Q
    |||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||     
T  8477459 ttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctctcccccagattaggccatattggctgaactgggtcaacaatcttctt 8477360  T
Q  158 ggtgt-tttgttcttcctttcttgcttatcttgttt 192  Q
    ||||| ||||||||| ||||||||||||||||||||    
T  8477359 ggtgtgtttgttctttctttcttgcttatcttgttt 8477324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 11 - 154
Target Start/End: Complemental strand, 18656579 - 18656436
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 109  Q
    ||||||||||| | |||||||||| | ||||||||||||||  |||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18656579 caaagggtaga-tctagggtttgttcatgtgtaaagcttgaatgctagag--tcttgtaaccttttgtaacactttctcatattggattggagagctgct 18656483  T
Q  110 ctct--cccagattaggccatattggctgaactgggtcaacaatctt 154  Q
    ||||  |||||||||||||||||||||||||||||||||||||||||    
T  18656482 ctctcccccagattaggccatattggctgaactgggtcaacaatctt 18656436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 30 - 169
Target Start/End: Complemental strand, 8512344 - 8512202
Alignment:
Q  30 tttgtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctgctctctccc--agattaggc 125  Q
    ||||||||||||||||||||||| ||||||  |||||| ||| |||||||||||| ||| |||||||||||||||||||||||||||||  |||||||||    
T  8512344 tttgtcttgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccagattaggc 8512247  T
Q  126 catattggctgaactgggtcaacaatctt-ctcggtgttttgttc 169  Q
    || |||||||||||||||||||||||||| |||||||||||||||    
T  8512246 cacattggctgaactgggtcaacaatcttgctcggtgttttgttc 8512202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 30 - 169
Target Start/End: Complemental strand, 8517224 - 8517082
Alignment:
Q  30 tttgtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctgctctctccc--agattaggc 125  Q
    ||||||||||||||||||||||| ||||||  |||||| ||| |||||||||||| ||| |||||||||||||||||||||||||||||  |||||||||    
T  8517224 tttgtcttgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccagattaggc 8517127  T
Q  126 catattggctgaactgggtcaacaatctt-ctcggtgttttgttc 169  Q
    || |||||||||||||||||||||||||| |||||||||||||||    
T  8517126 cacattggctgaactgggtcaacaatcttgctcggtgttttgttc 8517082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 30 - 228
Target Start/End: Original strand, 2672889 - 2673091
Alignment:
Q  30 tttgtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctgctctctccc--agattaggc 125  Q
    |||||| |||||||||||||||| ||||||  |||||| ||| |||||||||||| ||| |||||||||||||||||||||||||||||  |||||||||    
T  2672889 tttgtcatgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccagattaggc 2672986  T
Q  126 catattggctgaactgggtcaacaatctt-ctcggtgttttgttc--ttcctttc-ttgcttatcttgtttatgcttgttagctctttgtgtgcttttgt 221  Q
    || |||||||||||||||||||||||||| || |||| |||||||  ||| |||| | | |||||||| |||||||||||||||||| ||||| |||||     
T  2672987 cacattggctgaactgggtcaacaatcttgcttggtg-tttgttcttttcttttcatggtttatcttg-ttatgcttgttagctcttagtgtggttttgc 2673084  T
Q  222 tatacat 228  Q
    |||||||    
T  2673085 tatacat 2673091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 30 - 228
Target Start/End: Original strand, 2677045 - 2677247
Alignment:
Q  30 tttgtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctgctctctccc--agattaggc 125  Q
    |||||| |||||||||||||||| ||||||  |||||| ||| |||||||||||| ||| |||||||||||||||||||||||||||||  |||||||||    
T  2677045 tttgtcatgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccagattaggc 2677142  T
Q  126 catattggctgaactgggtcaacaatctt-ctcggtgttttgttc--ttcctttc-ttgcttatcttgtttatgcttgttagctctttgtgtgcttttgt 221  Q
    || |||||||||||||||||||||||||| || |||| |||||||  ||| |||| | | |||||||| |||||||||||||||||| ||||| |||||     
T  2677143 cacattggctgaactgggtcaacaatcttgcttggtg-tttgttcttttcttttcatggtttatcttg-ttatgcttgttagctcttagtgtggttttgc 2677240  T
Q  222 tatacat 228  Q
    |||||||    
T  2677241 tatacat 2677247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 61 - 189
Target Start/End: Complemental strand, 1306045 - 1305914
Alignment:
Q  61 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 157  Q
    |||||| |||| |||||||||||||| || || ||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||| |     
T  1306045 ttcttgtaaccctttgtaacactttcatcgtagtggattggagagctgctatctcccctagattaggccatattggctgaactgggtcaacaatctt-tt 1305947  T
Q  158 ggtgt-tttgttcttcctttcttgcttatcttg 189  Q
    ||||| |||||||||||||||||||||||||||    
T  1305946 ggtgtgtttgttcttcctttcttgcttatcttg 1305914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 214
Target Start/End: Complemental strand, 32475610 - 32475424
Alignment:
Q  30 tttgtcttgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgctctctccc--agattaggcc 126  Q
    ||||||||||||||||||||||| ||||||  |||||| |||  ||||||| || ||| |||||||||||||||||||||||||||||  ||||||||||    
T  32475610 tttgtcttgtgtaaagcttgataagctaga--ttcttgtaactctttgtaa-acattcacatattggattggagagctgctctctcccccagattaggcc 32475514  T
Q  127 atattggctgaactgggtcaacaatctt-ctcggtgttttgttc---ttcctttcttgcttatcttgtttatgcttgttagctctttgtgtg 214  Q
    | |||||||||||||||||||||||||| || ||||||||||||   ||| ||| | | ||||||||  ||||||||||||||||| |||||    
T  32475513 acattggctgaactgggtcaacaatcttgcttggtgttttgttcgttttcttttatcgtttatcttg--tatgcttgttagctcttagtgtg 32475424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 28501647 - 28501750
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 109  Q
    ||||||||||||| |||||||| | ||||||||||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28501647 caaagggtagaatctagggtttattcttgtgtaaagcttgaaggctagagtttcttgtaaccttttgtaacactttctcatattggattggagagctgct 28501746  T
Q  110 ctct 113  Q
    ||||    
T  28501747 ctct 28501750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 30 - 214
Target Start/End: Complemental strand, 32480468 - 32480282
Alignment:
Q  30 tttgtcttgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgctctctccc--agattaggcc 126  Q
    ||||||||||||||||||||||| ||||||  |||||| |||  ||||||| || ||| |||||||||||||||||||||||||||||  ||||||||||    
T  32480468 tttgtcttgtgtaaagcttgataagctaga--ttcttgtaactctttgtaa-acattcacatattggattggagagctgctctctcccccagattaggcc 32480372  T
Q  127 atattggctgaactgggtcaacaatctt-ctcggtgttttgttc---ttcctttcttgcttatcttgtttatgcttgttagctctttgtgtg 214  Q
    | ||||||||||||||||||||||||||  | ||||||||||||   ||| ||| | | ||||||||  ||||||||||||||||| |||||    
T  32480371 acattggctgaactgggtcaacaatcttggttggtgttttgttcgttttcttttatcgtttatcttg--tatgcttgttagctcttagtgtg 32480282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 37 - 228
Target Start/End: Complemental strand, 24968227 - 24968033
Alignment:
Q  37 tgtgtaaagcttga-tagctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctgctctctccc--agattaggccatattg 132  Q
    |||||||||||||| ||||||||  |||||| ||| |||||||||||| ||| ||||||||||||||||||| |||||||||  | |||| |||| ||||    
T  24968227 tgtgtaaagcttgaatagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctactctctccccaaaattaagccacattg 24968130  T
Q  133 gctgaactgggtcaacaatctt-ctcggtgttttgttc---ttcctttcttgcttatcttgtttatgcttgttagctctttgtgtgcttttgttatacat 228  Q
    |||||||||||||||||||||| ||||||| |||||||   ||| ||| | | ||||||||  ||||||||||||||||| ||||| ||||| |||||||    
T  24968129 gctgaactgggtcaacaatcttgctcggtg-tttgttcgttttcttttatcgtttatcttg--tatgcttgttagctcttagtgtggttttgctatacat 24968033  T

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Target: chr3; HSP #19
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 61 - 188
Target Start/End: Original strand, 26928591 - 26928721
Alignment:
Q  61 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 157  Q
    |||||| |||| |||||||||||||| ||||| |||||||||||| |||||||||||  |||||||| ||||||||||||||||||||||||||||| |     
T  26928591 ttcttgtaaccctttgtaacactttcatcatagtggattggagagttgctctctcccccagattaggtcatattggctgaactgggtcaacaatctt-tt 26928689  T
Q  158 ggtgt-tttgttcttcctttcttgcttatctt 188  Q
    ||||| ||||||||| |||||| |||||||||    
T  26928690 ggtgtgtttgttctttctttctagcttatctt 26928721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 61 - 188
Target Start/End: Complemental strand, 32143418 - 32143287
Alignment:
Q  61 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatcttct 156  Q
    |||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||  |||||||| |||||||| | ||||| ||||||||||||| |    
T  32143418 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggaccgaactaggtcaacaatctttt 32143319  T
Q  157 cggtgt-tttgttcttcctttcttgcttatctt 188  Q
     ||||| ||||||||||||||||||||||||||    
T  32143318 -ggtgtgtttgttcttcctttcttgcttatctt 32143287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 74 - 188
Target Start/End: Original strand, 27986449 - 27986567
Alignment:
Q  74 ttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatcttctcggtgt-tttgtt 168  Q
    ||||||||||||| ||||| |||||||||||||||||||||  ||||||||||| |||||||| | ||||||||||||||||||| | ||||| ||||||    
T  27986449 ttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt-ttggtgtgtttgtt 27986547  T
Q  169 cttcctttcttgcttatctt 188  Q
    | | ||||||||||||||||    
T  27986548 cattctttcttgcttatctt 27986567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 188
Target Start/End: Complemental strand, 27453055 - 27452924
Alignment:
Q  61 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatcttct 156  Q
    |||||| |||| |||||||||||||| ||||| |||||||||||||||||||||  ||| ||||||| |||||||| | ||||||| ||||||||||| |    
T  27453055 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccggattaggtcatattggaccgaactggatcaacaatctt-t 27452957  T
Q  157 cggtgt-tttgttcttcctttcttgcttatctt 188  Q
     ||||| ||||||| | ||||||||||||||||    
T  27452956 tggtgtgtttgttccttctttcttgcttatctt 27452924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 8370488 - 8370573
Alignment:
Q  73 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||| ||||| |||||||||||||||||||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  8370488 tttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 8370573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 27974954 - 27975039
Alignment:
Q  73 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||| ||||| |||||||||||||||||||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  27974954 tttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 27975039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 108 - 228
Target Start/End: Complemental strand, 10207981 - 10207859
Alignment:
Q  108 ctctctcccagattaggccatattggctgaactgggtcaacaatctt-ctcggtgttttgttc--ttcctttc-ttgcttatcttgtttatgcttgttag 203  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||| || |||| |||||||  ||| |||| | | |||||||| |||||||||||||    
T  10207981 ctctcccccagattaggccacattggctgaactgggtcaacaatcttgcttggtg-tttgttcttttcttttcatggtttatcttg-ttatgcttgttag 10207884  T
Q  204 ctctttgtgtgcttttgttatacat 228  Q
    ||||| ||||| ||||| |||||||    
T  10207883 ctcttagtgtggttttgctatacat 10207859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 18552883 - 18552970
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| ||||| |||||||||| ||||||||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  18552883 cttttgtaacactttcatcatagtggattggagggctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 18552970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 153
Target Start/End: Complemental strand, 36029180 - 36029094
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgc--tctctcccagattaggccatattgg-ctgaactgggtcaacaatct 153  Q
    |||||||||||||||| ||||| ||||||||||||||||  |||| ||||||||||| |||||||| | ||||||||||||||||||    
T  36029180 cttttgtaacactttcatcatagtggattggagagctgctttctcccccagattaggtcatattggacagaactgggtcaacaatct 36029094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 154
Target Start/End: Complemental strand, 16264435 - 16264350
Alignment:
Q  73 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||| ||||| |||||||||||||||||||||  ||||||||||| |||||||| | ||||| |||||||||||||    
T  16264435 tttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggaccgaactaggtcaacaatctt 16264350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 154
Target Start/End: Complemental strand, 21711308 - 21711223
Alignment:
Q  73 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||| ||||| |||||| ||||||||||||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  21711308 tttgtaacactttcatcatagtggatttgagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 21711223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 151
Target Start/End: Original strand, 1736305 - 1736389
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaat 151  Q
    |||||||||||||||| ||||| |||||||||| ||||||||||  ||||||||||| |||||||| | ||||||||||||||||    
T  1736305 cttttgtaacactttcatcatagtggattggagggctgctctctcccccagattaggtcatattggaccgaactgggtcaacaat 1736389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 33386669 - 33386753
Alignment:
Q  74 ttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    ||||||||||||| ||||| |||||||||||||||||||||  ||||||||||| |||||||| | ||||||| |||||||||||    
T  33386669 ttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggaccgaactggatcaacaatctt 33386753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 189
Target Start/End: Complemental strand, 1309878 - 1309819
Alignment:
Q  130 ttggctgaactgggtcaacaatcttctcggtgt-tttgttcttcctttcttgcttatcttg 189  Q
    ||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||    
T  1309878 ttggctgaactgggtcaacaatctttt-ggtgtgtttgttcttcctttcttgcttatcttg 1309819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 3716002 - 3716089
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctg--ctctctcccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| ||||| | |||||||||||||  |||||||| |||||||| |||||||| | |||||||||||||||||||    
T  3716002 cttttgtaacactttcatcatagtagattggagagctgctctctctcctagattaggtcatattggaccgaactgggtcaacaatctt 3716089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 30709790 - 30709877
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    ||||||||||| |||| ||||| |||||||||| ||||||||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  30709790 cttttgtaacaatttcatcatagtggattggagggctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 30709877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 40592782 - 40592869
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctctcc--cagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| ||||| | |||||||||||| ||||||||  ||||||||| |||||||| | |||||||||||||||||||    
T  40592782 cttttgtaacactttcatcatagtcgattggagagcttctctctcccacagattaggtcatattggaccgaactgggtcaacaatctt 40592869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 48438301 - 48438214
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| ||||| |||||||||| ||||||||||  ||||||||||| |||||||| | ||||| |||||| ||||||    
T  48438301 cttttgtaacactttcatcatagtggattggagggctgctctctcccccagattaggtcatattggaccgaactaggtcaataatctt 48438214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 6794715 - 6794800
Alignment:
Q  73 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||| ||||| |||||||||||||||||||||  |||| |||||| |||||||| |  ||| ||||||||||||||    
T  6794715 tttgtaacactttcatcatagtggattggagagctgctctctcccccatattaggtcatattggacctaaccgggtcaacaatctt 6794800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 40844738 - 40844652
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctct-cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| ||||| |||||| ||| |||||||||| ||||||||||| |||||||| | ||||||  |||||||||||    
T  40844738 cttttgtaacactttcatcatagtggatttgagggctgctctctccccagattaggtcatattggaccgaactgaatcaacaatctt 40844652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 1417493 - 1417577
Alignment:
Q  74 ttgtaacactttct-catattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||| | || |||||||||| | |||||||||||  |||||||| |||||||| | |||||||||||||||||||    
T  1417493 ttgtaacactttcttcttagtggattggagggatgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 1417577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 39039995 - 39040079
Alignment:
Q  74 ttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    ||||||||||||| ||||| |||||||||||| || |||||  ||||||||||| |||||||| | ||||| |||||||||||||    
T  39039995 ttgtaacactttcatcatagtggattggagagttgttctcttccccagattaggtcatattggaccgaactaggtcaacaatctt 39040079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 25795868 - 25795781
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||| ||||||||||| || || | |||||||||||||||||||  ||||||||||| |||||||| | ||||| |||||||||||||    
T  25795868 ctttcgtaacactttcatcttagtagattggagagctgctctctcccccagattaggtcatattggaccgaactaggtcaacaatctt 25795781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 26299075 - 26298988
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| ||||| | |||||||| |||||||||||||  |||||| | |||||||  | |||||||||||||||||||    
T  26299075 cttttgtaacactttcatcatagtagattggagggctgctctctcccccagattatgtcatattgaaccgaactgggtcaacaatctt 26298988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 47923906 - 47923993
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggct-gaactgggtcaacaatctt 154  Q
    |||||||| ||||||| ||||| | ||||| || |||||||||||||  |||||||| |||||||| | |||||||||||||||||||    
T  47923906 cttttgtagcactttcatcatagtagattgaagggctgctctctcccctagattaggtcatattggatcgaactgggtcaacaatctt 47923993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 3328359 - 3328443
Alignment:
Q  74 ttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggc-tgaactgggtcaacaatctt 154  Q
    ||||||||||||| || || ||||||| || ||||||||||||   |||||||| ||||||||  ||||||||||||||||||||    
T  3328359 ttgtaacactttcatcttagtggattgaagggctgctctctcctctagattaggtcatattggaatgaactgggtcaacaatctt 3328443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 37466375 - 37466291
Alignment:
Q  74 ttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    ||||||||||||| || || |||||||||| ||| |||||||||  |||||||| |||||||| | |||||| ||||||||||||    
T  37466375 ttgtaacactttcatcttagtggattggagggctactctctcccccagattaggtcatattggaccgaactgtgtcaacaatctt 37466291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 24695164 - 24695251
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| |||||  ||||| ||| | |||||||||||  |||||||| |||||||| | ||||| |||||||||||||    
T  24695164 cttttgtaacactttcatcatagcggattagagggttgctctctcccgtagattaggtcatattggaccgaactaggtcaacaatctt 24695251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 22010636 - 22010855
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 109  Q
    ||||||||||||| |||||||||| | ||||||||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22010636 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaaccttttgtaacactttctcatattggattggagagctgct 22010734  T
Q  110 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcc-tttcttgcttatcttgtttatgc-ttgttagct 205  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||| ||| ||| || ||    
T  22010735 ctctcccccagattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttccttttatcgcttatcttgttt-tgctttggtatct 22010833  T
Q  206 ctttgtgtgcttttgttataca 227  Q
    ||||||||| ||||| ||||||    
T  22010834 ctttgtgtggttttgctataca 22010855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 11 - 198
Target Start/End: Complemental strand, 28184650 - 28184460
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 109  Q
    ||||||||||||| |||||||||| | ||||||||||||||  |||||||  | ||| |||||||||||||||||||||||||| |||||||||||||||    
T  28184650 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag--tgttgtaaccttttgtaacactttctcatattagattggagagctgct 28184553  T
Q  110 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttct--tgcttatcttgtttatgctt 198  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |   |||||||||||||||||||    
T  28184552 ctctcccccagattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttctttctttttaccgcttatcttgtttatgctt 28184460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 14737516 - 14737682
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 109  Q
    ||||||||||||| |||||||||| | | ||||||||||||  |||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14737516 caaagggtagaatctagggtttgttcatatgtaaagcttgaaggctagag--tcttgtaaccttttgtaacactttctcatattggattggagagctgct 14737613  T
Q  110 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttccttt 176  Q
    |||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  14737614 ctctcccccagattaggccatattggctgaactggatcaacaatcttctcggtgttttgttctttcttt 14737682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 28155510 - 28155729
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 109  Q
    ||||||||||| | |||||||||| | |||||||||||||| ||||| |  |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28155510 caaagggtaga-tctagggtttgttcatgtgtaaagcttgaaagctaaa--ttcttgtaaccttttgtaacactttctcatattggattggagagctgct 28155606  T
Q  110 ctct--cccagattaggccatattggctgaactgggtcaacaatctt-ctcggtgttttgttctt--cctttcttgcttatcttgtttatgcttgttagc 204  Q
    ||||  |||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||  | |||   | |||||||||||||||||||||||    
T  28155607 ctctcccccagattaggccacattggctgaactgggtcaacaatcttgttcggtgttttgttctttccatttaccgtttatcttgtttatgcttgttagc 28155706  T
Q  205 tctttgtgtgcttttgttataca 227  Q
    |||| ||||| ||||| ||||||    
T  28155707 tcttagtgtggttttgctataca 28155729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 11857120 - 11856898
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 109  Q
    ||||||||||||| |||||||||| | ||||||||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11857120 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaaccttttgtaacactttctcatattggattggagagctgct 11857022  T
Q  110 ctct--cccagattaggccatattggctgaactgggtcaacaatcttctcggtg---ttttgttcttcc-tttcttgcttatcttgtttatgc-ttgtta 202  Q
    ||||  |||| |||||||||||||||||||||||||||||||||||||| ||||   |||||||||||| ||| | |||| |||||||| ||| ||| ||    
T  11857021 ctctcccccatattaggccatattggctgaactgggtcaacaatcttcttggtgtttttttgttcttccttttatcgcttgtcttgttt-tgctttggta 11856923  T
Q  203 gctctttgtgtgcttttgttataca 227  Q
     ||||||||||| ||||| ||||||    
T  11856922 tctctttgtgtggttttgctataca 11856898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 14742376 - 14742594
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 109  Q
    ||||||||||||| |||||||||| | | ||||||||||||  |||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14742376 caaagggtagaatctagggtttgttcatatgtaaagcttgaaggctagag--tcttgtaaccttttgtaacactttctcatattggattggagagctgct 14742473  T
Q  110 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttctt-gcttatcttgtttatgctt-gttagct 205  Q
    |||||||  | |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    ||||||||||||| ||||| | || ||    
T  14742474 ctctcccccaaattaggtcatattggctgaactgggtcaacaatcttctcggtgttttgttctttcttttaccgcttatcttgttt-tgctttgatatct 14742572  T
Q  206 ctttgtgtgcttttgttataca 227  Q
    ||||||||| ||||| ||||||    
T  14742573 ctttgtgtggttttgctataca 14742594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 25 - 227
Target Start/End: Complemental strand, 6438632 - 6438426
Alignment:
Q  25 tagggtttgt-cttgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgctctctccc--agat 120  Q
    |||||||||| | |||||||||||||| | |||||||  ||||| ||||||||||||||||| | |||||||||||||||||||||||||||||  ||||    
T  6438632 tagggtttgttcatgtgtaaagcttgacaagctagag--tcttgtaaccttttgtaacactt-cacatattggattggagagctgctctctcccccagat 6438536  T
Q  121 taggccatattggctgaactgggtcaacaatctt-ctcggtgttttgttctt--cctttcttgcttatcttgtttatgcttgttagctctttgtgtgctt 217  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||  | |||   | ||||||||||||||||||||||||||||||||| ||    
T  6438535 taggccatattggctgaactgggacaacaatcttgctcggtgttttgttctttccttttaccgtttatcttgtttatgcttgttagctctttgtgtggtt 6438436  T
Q  218 ttgttataca 227  Q
    ||| ||||||    
T  6438435 ttgctataca 6438426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 11 - 192
Target Start/End: Original strand, 5674719 - 5674905
Alignment:
Q  11 caaagggtagaatttagggtttgt--cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagctg 107  Q
    ||||||||||||| ||||  ||||  ||||||||| |||||  |||||  | |||||| |||| |||||||||||||| |||||||||||||||||||||    
T  5674719 caaagggtagaatctaggtcttgtttcttgtgtaa-gcttgcaagctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctg 5674817  T
Q  108 ctctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgt-tttgttcttcctttcttgcttatcttgttt 192  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||  | ||||| ||||||||| ||||||||||||| ||||||    
T  5674818 ctctctcccccagattaggccatattggctgaactgggtcaacaatctctttggtgtgtttgttctttctttcttgcttatattgttt 5674905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 16838890 - 16838670
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttga-tagctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctg 107  Q
    ||||||||||| | |||||||||| | |||||||||||||| ||||||||  |||||| ||| |||||||||||| ||| ||||||||||||||||||||    
T  16838890 caaagggtaga-tctagggtttgttcatgtgtaaagcttgaatagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctg 16838794  T
Q  108 ctctct--cccagattaggccatattggctgaactgggtcaacaatctt-ctcggtgttttgttc---ttcctttcttgcttatcttgtttatgcttgtt 201  Q
    ||||||  ||||||||| |||| |||||||||||||||||||||||||| ||||||| |||||||   ||| ||| | | ||||||||  ||||||||||    
T  16838793 ctctctcccccagattaagccacattggctgaactgggtcaacaatcttgctcggtg-tttgttcgttttcttttatcgtttatcttg--tatgcttgtt 16838697  T
Q  202 agctctttgtgtgcttttgttatacat 228  Q
    ||||||| ||||| ||||| |||||||    
T  16838696 agctcttagtgtggttttgctatacat 16838670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 25 - 228
Target Start/End: Complemental strand, 6005550 - 6005343
Alignment:
Q  25 tagggtttgt-cttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctgctctctccc--aga 119  Q
    |||||||||| | |||||||||||||| | ||||||  |||||| ||| |||||||||||| ||| |||||||||||||||||||||||||||||  |||    
T  6005550 tagggtttgttcatgtgtaaagcttgaaaagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccaga 6005453  T
Q  120 ttaggccatattggctgaactgggtcaacaatctt-ctcggtgttttgttctt---cctttcttgcttatcttgtttatgcttgttagctctttgtgtgc 215  Q
    |||||||| |||||||||||||||||||||||||| ||||||| |||||||||   | ||| | | ||||||||  ||||||||||||||||| |||||     
T  6005452 ttaggccacattggctgaactgggtcaacaatcttgctcggtg-tttgttcttttccttttatcgtttatcttg--tatgcttgttagctcttagtgtgg 6005356  T
Q  216 ttttgttatacat 228  Q
    ||||| |||||||    
T  6005355 ttttgctatacat 6005343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 219
Target Start/End: Original strand, 33330403 - 33330596
Alignment:
Q  30 tttgtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctgctctctccc--agattaggc 125  Q
    |||||| |||||||||||||||| ||||||  |||||| ||| |||||||||||| ||| |||||||||||||||||||||||||||||  |||||||||    
T  33330403 tttgtcatgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccagattaggc 33330500  T
Q  126 catattggctgaactgggtcaacaatctt-ctcggtgttttgttc--ttcctttc-ttgcttatcttgtttatgcttgttagctctttgtgtgctttt 219  Q
    || |||||||||||||||||||||||||| || |||| |||||||  ||| |||| | | |||||||| |||||||||||||||||| ||||| ||||    
T  33330501 cacattggctgaactgggtcaacaatcttgcttggtg-tttgttcttttcttttcatggtttatcttg-ttatgcttgttagctcttagtgtggtttt 33330596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 30 - 219
Target Start/End: Original strand, 33335900 - 33336093
Alignment:
Q  30 tttgtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctgctctct--cccagattaggc 125  Q
    |||||| |||||||||||||||| ||||||  |||||| ||| |||||||||||| ||| ||||||||||||||||||||||||||  |||||||||||     
T  33335900 tttgtcatgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccagattaggt 33335997  T
Q  126 catattggctgaactgggtcaacaatctt-ctcggtgttttgttc--ttcctttc-ttgcttatcttgtttatgcttgttagctctttgtgtgctttt 219  Q
    || |||||||||||||||||||||||||| || |||| |||||||  ||| |||| | | |||||||| |||||||||||||||||| ||||| ||||    
T  33335998 cacattggctgaactgggtcaacaatcttgcttggtg-tttgttcttttcttttcatggtttatcttg-ttatgcttgttagctcttagtgtggtttt 33336093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 5757490 - 5757575
Alignment:
Q  73 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||| ||||| |||||||||||||||||||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  5757490 tttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 5757575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 74 - 188
Target Start/End: Complemental strand, 22709102 - 22708984
Alignment:
Q  74 ttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatcttctcggtgt-tttgtt 168  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||  |||||||  |||||||  | ||||| |||||||||| || | ||||| ||||||    
T  22709102 ttgtaacactttcatcatagtggattggagagctgctctctcccccagattagatcatattgaaccgaactaggtcaacaatttttt-ggtgtgtttgtt 22709004  T
Q  169 cttcctttcttgcttatctt 188  Q
    ||||||||||||||||||||    
T  22709003 cttcctttcttgcttatctt 22708984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 76 - 154
Target Start/End: Complemental strand, 21356118 - 21356036
Alignment:
Q  76 gtaacactttc-tcatattggattggagagctgctctctc--ccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    ||||||||||| ||||| ||||||||||||||||||||||  |||||||||| |||||||| | |||||||||||||||||||    
T  21356118 gtaacactttcatcatagtggattggagagctgctctctcctccagattaggtcatattggaccgaactgggtcaacaatctt 21356036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 31086485 - 31086570
Alignment:
Q  73 tttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||| ||||| |||||||||||| |||||||||||  |||||||  |||||||| |||||||||||||||||||||    
T  31086485 tttgtaacactttcatcatagtggattggagagttgctctctcccctagattagatcatattggactgaactgggtcaacaatctt 31086570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 219
Target Start/End: Complemental strand, 5343519 - 5343416
Alignment:
Q  117 agattaggccatattggctgaactgggtcaacaatctt-ctcggtgttttgttc---ttcctttcttgcttatcttgtttatgcttgttagctctttgtg 212  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||| |||||||   ||||||| | | ||||||||  ||||||||||||||||| |||    
T  5343519 agattaggccacattggctgaactgggtcaacaatcttgctcggtg-tttgttcgttttcctttatcgtttatcttg--tatgcttgttagctcttagtg 5343423  T
Q  213 tgctttt 219  Q
    || ||||    
T  5343422 tggtttt 5343416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 5572251 - 5572338
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| ||||| |||||||||| |||||||||||||  |||||||| |||||||| | ||| |||||||||||||||    
T  5572251 cttttgtaacactttcatcatagtggattggagggctgctctctcccctagattaggtcatattggaccgaattgggtcaacaatctt 5572338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 154
Target Start/End: Complemental strand, 4630040 - 4629954
Alignment:
Q  72 ttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    ||||||||||||||| || || |||||||||||||||||||||  || |||||||| |||||||| |||||||| ||||||||||||    
T  4630040 ttttgtaacactttcatcttagtggattggagagctgctctcttccctagattaggtcatattggactgaactgagtcaacaatctt 4629954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 154
Target Start/End: Original strand, 10077176 - 10077262
Alignment:
Q  72 ttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    ||||||||||||||| ||||| |||||||||| ||||||||||  ||||||||||| |||||||| | ||| |||||||||||||||    
T  10077176 ttttgtaacactttcatcatagtggattggagggctgctctctcccccagattaggtcatattggaccgaattgggtcaacaatctt 10077262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 22963786 - 22963700
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctct-cccagattaggccatattg-gctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| ||||| |||||||||| |||||||||| |||||||| || |||||||  | |||||||||||||||||||    
T  22963786 cttttgtaacactttcatcatagtggattggagggctgctctctccccagatttggtcatattgcaccgaactgggtcaacaatctt 22963700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 23824607 - 23824693
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctct-cccagattaggccatattg-gctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| ||||| |||||||||| |||||||||| |||||||| || |||||||  | |||||||||||||||||||    
T  23824607 cttttgtaacactttcatcatagtggattggagggctgctctctccccagatttggtcatattgcaccgaactgggtcaacaatctt 23824693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 31979600 - 31979513
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||| ||||||||| || || |||||||||| ||||||||||  ||||||||| | |||||||| | |||||||||||||||||||    
T  31979600 cttttgcaacactttcatcttagtggattggagggctgctctctcccccagattatgtcatattggaccgaactgggtcaacaatctt 31979513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 5017482 - 5017566
Alignment:
Q  74 ttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    ||||||||||||| ||||| | |||||||| | |||||||||||  |||||||| |||||| | | |||||||||||||||||||    
T  5017482 ttgtaacactttcatcatagtagattggagggttgctctctcccctagattaggtcatatttgaccgaactgggtcaacaatctt 5017566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 31936651 - 31936587
Alignment:
Q  93 tggattggagagctgctc--tctcccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    ||||||||||||||||||  ||||||||| |||| |||||||| | ||||| |||||||||||||    
T  31936651 tggattggagagctgctctctctcccagactaggtcatattggaccgaactaggtcaacaatctt 31936587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 142
Target Start/End: Original strand, 21801354 - 21801429
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgct--ctctcccagattaggccatattgg-ctgaactgg 142  Q
    |||||||||||||||  || || |||||||||||||||||  ||| ||||||||||| |||||||| |||||||||    
T  21801354 cttttgtaacacttttatcttagtggattggagagctgctcgctcccccagattaggtcatattggactgaactgg 21801429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 44312563 - 44312782
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 109  Q
    ||||||||||||| |||||||||| | ||||||||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  44312563 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaaccttttgtaacactttctcatattggattggagagctgct 44312661  T
Q  110 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcc-tttcttgcttatcttgtttatgc-ttgttagct 205  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||| ||| ||| || ||    
T  44312662 ctctcccccagattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttccttttatcgcttatcttgttt-tgctttggtatct 44312760  T
Q  206 ctttgtgtgcttttgttataca 227  Q
    ||||||||| ||||| ||||||    
T  44312761 ctttgtgtggttttgctataca 44312782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 11098877 - 11099089
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagctgc 108  Q
    ||||||||||||| |||||||||| ||||||||| |||||  |||||  | |||||| |||| |||||||||||||| ||||||||||||||||||||||    
T  11098877 caaagggtagaatctagggtttgttcttgtgtaa-gcttgcaagctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgc 11098975  T
Q  109 tctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagct 205  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||| ||| || ||    
T  11098976 tctctcccccagattaggccatattggctgaactgggtcaacaatcttcttggtgttttgttcttcctttcttccttatcttgttt-tgctttggtatct 11099074  T
Q  206 ctttgtgtgcttttg 220  Q
    ||||||||| |||||    
T  11099075 ctttgtgtggttttg 11099089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 15 - 220
Target Start/End: Complemental strand, 14291631 - 14291423
Alignment:
Q  15 gggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctc 112  Q
    ||||||||| ||||| |||| ||||||||| ||||||  ||||  | |||||| |||| |||||||||||||| ||||||||||||||||||||||||||    
T  14291631 gggtagaatctagggcttgttcttgtgtaa-gcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctc 14291533  T
Q  113 tccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctcttt 209  Q
    ||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||| ||||||    
T  14291532 tcccccagattaggccatattggctgaactgggtcaacaatcttcttggtgttttgttcttcctttcttgcttatcttgttt-tgctttgttatctcttt 14291434  T
Q  210 gtgtgcttttg 220  Q
    ||||| |||||    
T  14291433 gtgtggttttg 14291423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 39811928 - 39812094
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 109  Q
    ||||||||||||| |||||||||| | ||||||||||||||  |||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39811928 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag--tcttgtaaccttttgtaacactttctcatattggattggagagctgct 39812025  T
Q  110 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttccttt 176  Q
    |||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  39812026 ctctcccccagattaggccatattggctgaactggttcaacaatcttctcggtgttttgttctttcttt 39812094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 11 - 198
Target Start/End: Complemental strand, 32246933 - 32246740
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 109  Q
    ||||||||| ||| |||||||||| | |||||||||||||| ||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32246933 caaagggtataatctagggtttgttcatgtgtaaagcttgaaagctagag--tcttgtaaccttttgtaacactttctcatattggattggagagctgct 32246836  T
Q  110 ctct--cccagattaggccatattggctgaactgggtcaacaatctt-ctcggtgttttgttcttcc----tttcttgcttatcttgtttatgctt 198  Q
    ||||  ||||||||||||||||||||||||||  |||||||||||||  ||||||||||||||||||    |||||||||||||||||||||||||    
T  32246835 ctctcccccagattaggccatattggctgaacaaggtcaacaatcttgttcggtgttttgttcttcctttttttcttgcttatcttgtttatgctt 32246740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 61 - 220
Target Start/End: Original strand, 9296401 - 9296563
Alignment:
Q  61 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 157  Q
    |||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||     
T  9296401 ttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctctcccccaaattaggccatattggctgaactgggtcaacaatcttctt 9296500  T
Q  158 ggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctctttgtgtgcttttg 220  Q
    |||||||||||||||||||||||||| |||||||| ||| |||||| ||||||||||| |||||    
T  9296501 ggtgttttgttcttcctttcttgcttttcttgttt-tgctttgttatctctttgtgtggttttg 9296563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 61 - 192
Target Start/End: Complemental strand, 25398592 - 25398457
Alignment:
Q  61 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 157  Q
    |||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||| |     
T  25398592 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggctgaactgggtcaacaatcttttt 25398493  T
Q  158 ggtgt-tttgttcttcctttcttgcttatcttgttt 192  Q
    ||||| ||||||||||||||||||||||||||||||    
T  25398492 ggtgtgtttgttcttcctttcttgcttatcttgttt 25398457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 61 - 189
Target Start/End: Complemental strand, 3491847 - 3491716
Alignment:
Q  61 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 157  Q
    |||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |     
T  3491847 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggccatattggctgaactgggtcaacaatctt-tt 3491749  T
Q  158 ggtgt-tttgttcttcctttcttgcttatcttg 189  Q
    ||||| |||||||||||||||||||||||||||    
T  3491748 ggtgtgtttgttcttcctttcttgcttatcttg 3491716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 25 - 228
Target Start/End: Complemental strand, 19344554 - 19344346
Alignment:
Q  25 tagggtttgt-cttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctgctctctccc--aga 119  Q
    |||||||||| | |||||||||||||| | ||||||  |||||| ||| |||||||||||| ||| |||||||||||||||||||||||||||||  |||    
T  19344554 tagggtttgttcatgtgtaaagcttgaaaagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccctaga 19344457  T
Q  120 ttaggccatattggctgaactgggtcaacaatctt-ctcggtgttttgttctt---cctttcttgcttatcttgtttatgcttgttagctctttgtgtgc 215  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||||   | ||| | | ||||||||  ||||||||||||||||| |||||     
T  19344456 ttaggccacattggctgaactgggtcaacaatcttgctcggtgttttgttcttttccttttatcgtttatcttg--tatgcttgttagctcttagtgtgg 19344359  T
Q  216 ttttgttatacat 228  Q
    ||||| |||||||    
T  19344358 ttttgctatacat 19344346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 25 - 228
Target Start/End: Complemental strand, 19349412 - 19349204
Alignment:
Q  25 tagggtttgt-cttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctgctctctccc--aga 119  Q
    |||||||||| | |||||||||||||| | ||||||  |||||| ||| |||||||||||| ||| |||||||||||||||||||||||||||||  |||    
T  19349412 tagggtttgttcatgtgtaaagcttgaaaagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccctaga 19349315  T
Q  120 ttaggccatattggctgaactgggtcaacaatctt-ctcggtgttttgttctt---cctttcttgcttatcttgtttatgcttgttagctctttgtgtgc 215  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||||   | ||| | | ||||||||  ||||||||||||||||| |||||     
T  19349314 ttaggccacattggctgaactgggtcaacaatcttgctcggtgttttgttcttttccttttatcgtttatcttg--tatgcttgttagctcttagtgtgg 19349217  T
Q  216 ttttgttatacat 228  Q
    ||||| |||||||    
T  19349216 ttttgctatacat 19349204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 61 - 192
Target Start/End: Complemental strand, 25403730 - 25403595
Alignment:
Q  61 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 157  Q
    |||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||  |||||||| |||||||||||||||| |||||||||||| |     
T  25403730 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggctgaactgagtcaacaatcttttt 25403631  T
Q  158 ggtgt-tttgttcttcctttcttgcttatcttgttt 192  Q
    ||||| ||||||||||||||||||||||||||||||    
T  25403630 ggtgtgtttgttcttcctttcttgcttatcttgttt 25403595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 74 - 188
Target Start/End: Complemental strand, 40738926 - 40738810
Alignment:
Q  74 ttgtaacactttc-tcatattggattggagagctgctctctccc-agattaggccatattggctgaactgggtcaacaatcttctcggtgt-tttgttct 170  Q
    ||||||||||||| ||||| |||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||| | ||||| ||||||||    
T  40738926 ttgtaacactttcatcatagtggattggagagctgctctccccccagattaggtcatattggctgaactgggtcaacaatctt-ttggtgtgtttgttct 40738828  T
Q  171 tcctttcttgcttatctt 188  Q
    |||||||| |||||||||    
T  40738827 tcctttctagcttatctt 40738810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 21630030 - 21629944
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctct-cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||    
T  21630030 cttttgtaacactttcatcatagtggattggagagctgctctctccccagattaggtcatattggactgaactgggtcaacaatctt 21629944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 8040147 - 8040060
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| ||||| |||||||||||||||||||||  ||||||||||| |||||||| |||||||||||||||||||||    
T  8040147 cttttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggactgaactgggtcaacaatctt 8040060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 151
Target Start/End: Complemental strand, 13569415 - 13569331
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaat 151  Q
    |||||||||||||||| ||||| |||||||||||||||||||||  ||||||||||| |||||||| | ||||||||||||||||    
T  13569415 cttttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaat 13569331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 28259189 - 28259274
Alignment:
Q  73 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||| ||||| |||||||||||||||||||||  |||| |||||| |||||||| | |||||||||||||||||||    
T  28259189 tttgtaacactttcatcatagtggattggagagctgctctctcccccaaattaggtcatattggaccgaactgggtcaacaatctt 28259274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 154
Target Start/End: Complemental strand, 20522308 - 20522220
Alignment:
Q  70 ccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    ||||||||||||||||| ||||| |||||||||| | |||||||||||  |||||||| |||||||| | |||||||||||||||||||    
T  20522308 ccttttgtaacactttcatcatagtggattggagggttgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 20522220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 10445454 - 10445541
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| | ||| |||||||||||||||||||||  ||||||||||| |||||||| | ||||||| |||||||||||    
T  10445454 cttttgtaacactttcataatagtggattggagagctgctctctcccccagattaggtcatattggaccgaactggatcaacaatctt 10445541  T

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Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 17865290 - 17865203
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| ||||| |||||||||| | |||||||||||  |||||||| |||||| | |||||||||||||||||||||    
T  17865290 cttttgtaacactttcatcatagtggattggagggttgctctctcccccagattaggtcatattcgactgaactgggtcaacaatctt 17865203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 34682344 - 34682431
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| | ||| |||||||||||||||||||||  ||||||||| | |||||||| | |||||||||||||||||||    
T  34682344 cttttgtaacactttcattatagtggattggagagctgctctctcccccagattatgtcatattggaccgaactgggtcaacaatctt 34682431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 153
Target Start/End: Complemental strand, 34388945 - 34388859
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatct 153  Q
    |||||||||||||||| ||||| |||||||||||||| ||||||  ||||||||||| |||||||| | ||| ||||||||||||||    
T  34388945 cttttgtaacactttcatcatagtggattggagagctactctctcccccagattaggtcatattggaccgaattgggtcaacaatct 34388859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 14699018 - 14699104
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||| ||||| ||||| |||||||||| ||||||||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  14699018 cttttgtaac-ctttcatcatagtggattggagggctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 14699104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 25407719 - 25407663
Alignment:
Q  61 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc 116  Q
    |||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||    
T  25407719 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctccc 25407663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 31056131 - 31056044
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattg-gctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| || || ||||||||||||||||||||||||  |||||||| |||||||  | ||||| |||||||||||||    
T  31056131 cttttgtaacactttcatcttagtggattggagagctgctctctcccctagattaggtcatattgaaccgaactaggtcaacaatctt 31056044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 33528631 - 33528718
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| ||||| |||||||||| | ||||||||  |||| |||||| |||||||| | |||||||||||||||||||    
T  33528631 cttttgtaacactttcatcatagtggattggagggttgctctctttcccatattaggtcatattggaccgaactgggtcaacaatctt 33528718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 153
Target Start/End: Original strand, 10707262 - 10707348
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctg--ctctctcccagattaggccatattgg-ctgaactgggtcaacaatct 153  Q
    |||||||||||||||| ||||| |||||||||||| ||  ||||| |||| |||||| |||||||| | ||||||||||||||||||    
T  10707262 cttttgtaacactttcatcatagtggattggagagttgttctctcccccatattaggtcatattggaccgaactgggtcaacaatct 10707348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 151
Target Start/End: Original strand, 8390160 - 8390244
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaat 151  Q
    ||||| |||||||||| ||||| |||||||||||||||||||||  |||| |||||| ||| |||| | ||||||||||||||||    
T  8390160 cttttttaacactttcatcatagtggattggagagctgctctctcccccaaattaggtcattttggaccgaactgggtcaacaat 8390244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 154
Target Start/End: Original strand, 42039684 - 42039766
Alignment:
Q  76 gtaacactttc-tcatattggattggagagctgctctctcc--cagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    ||||||||||| ||||| |||||| ||||||||||||||||  ||||||||| |||||||| | ||||| | |||||||||||    
T  42039684 gtaacactttcatcatagtggattagagagctgctctctcccacagattaggtcatattggaccgaactagatcaacaatctt 42039766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 16940219 - 16940306
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctg--ctctctcccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| ||||| |||||||||| ||||  || || ||||||||| | |||||||| | ||| |||||||||||||||    
T  16940219 cttttgtaacactttcatcatagtggattggagggctgatctttcccccagattatgtcatattggaccgaattgggtcaacaatctt 16940306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 17010884 - 17010971
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctg--ctctctcccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| ||||| |||||||||| ||||  || || ||||||||| | |||||||| | ||| |||||||||||||||    
T  17010884 cttttgtaacactttcatcatagtggattggagggctgatctttcccccagattatgtcatattggaccgaattgggtcaacaatctt 17010971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 39483018 - 39482931
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    ||||||||||| |||| ||||| ||||||||||  |||||||||  |||| |||||| |||||||| | ||||| |||||||||||||    
T  39483018 cttttgtaacattttcatcatagtggattggaggcctgctctctcccccatattaggtcatattggaccgaactaggtcaacaatctt 39482931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 6e-61; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 11 - 219
Target Start/End: Complemental strand, 41398381 - 41398176
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 109  Q
    ||||||||||||| |||||||||| | ||||||||||||||  |||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  41398381 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag--tcttgtaaccttttgtaacactttctcatattggattggagagctgct 41398284  T
Q  110 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctc 206  Q
    |||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||     |||||||||||||||| ||| || |||    
T  41398283 ctctcccccagattaggccatattggctgacctgggtcaacaatcttctcggtgttttgttcttcctt-----cttatcttgtttatgctttggtatctc 41398189  T
Q  207 tttgtgtgctttt 219  Q
    |||||||| ||||    
T  41398188 tttgtgtggtttt 41398176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 11 - 219
Target Start/End: Complemental strand, 41390726 - 41390521
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 109  Q
    ||||||||||||| |||||||||| | ||||||||||||||  |||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  41390726 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag--tcttgtaaccttttgtaacactttctcatattggattggagagctgct 41390629  T
Q  110 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctc 206  Q
    |||||||  ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||     |||||||||||||||| ||| || |||    
T  41390628 ctctcccccagattaggccatattggctgatctgggtcaacaatcttctcgatgttttgttcttcctt-----cttatcttgtttatgctttgatatctc 41390534  T
Q  207 tttgtgtgctttt 219  Q
    |||||||| ||||    
T  41390533 tttgtgtggtttt 41390521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 24787314 - 24787526
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 109  Q
    ||||||||||||| |||| ||||| ||||||||| ||||||  ||||  | |||||| |||| |||||||||||||||||||||||||||||||||||||    
T  24787314 caaagggtagaatctaggatttgttcttgtgtaatgcttgaaggctattgtttcttgtaaccctttgtaacactttctcatattggattggagagctgct 24787413  T
Q  110 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcc-tttcttgcttatcttgtttatgc-ttgttagct 205  Q
    ||| |||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||  ||| |||||| ||    
T  24787414 ctcccccccagattaggccatattggctgaactgggtcaacaatcttcttggtgttttgttcttccttttcttgcttatcttgtt--tgctttgttatct 24787511  T
Q  206 ctttgtgtgcttttg 220  Q
    ||||||||| |||||    
T  24787512 ctttgtgtggttttg 24787526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 25 - 227
Target Start/End: Original strand, 25445042 - 25445249
Alignment:
Q  25 tagggtttgt-cttgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgctctct--cccagat 120  Q
    |||||||||| | |||||||||||||||| |||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  25445042 tagggtttgttcatgtgtaaagcttgataagctagag--tcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 25445139  T
Q  121 taggccatattggctgaactgggtcaacaatctt-ctcggtgttttgttctt--cctttcttgcttatcttgtttatgcttgttagctctttgtgtgctt 217  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||  | |||   | |||||||||||| |||||||||||||||||||| ||    
T  25445140 taggccatattggctgaactgggtcaacaatcttgctcggtgttttgttctttccttttaccgtttatcttgtttacgcttgttagctctttgtgtggtt 25445239  T
Q  218 ttgttataca 227  Q
    ||| ||||||    
T  25445240 ttgctataca 25445249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 25 - 227
Target Start/End: Complemental strand, 39445631 - 39445425
Alignment:
Q  25 tagggtttgt-cttgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgctctctccc--agat 120  Q
    |||||||||| | |||||||||||||||| |||||||  ||||| ||||||||||||||||| | |||||||||||||||||||||||||||||  ||||    
T  39445631 tagggtttgttcatgtgtaaagcttgataagctagag--tcttgtaaccttttgtaacactt-cacatattggattggagagctgctctctcccccagat 39445535  T
Q  121 taggccatattggctgaactgggtcaacaatctt-ctcggtgttttgttctt--cctttcttgcttatcttgtttatgcttgttagctctttgtgtgctt 217  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||  | |||   | ||||||||||||||||||||||||||||||||| ||    
T  39445534 taggccatattggctgaactgggtcaacaatcttgctcggtgttttgttctttccttttaccgtttatcttgtttatgcttgttagctctttgtgtggtt 39445435  T
Q  218 ttgttataca 227  Q
    ||| ||||||    
T  39445434 ttgctataca 39445425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 25 - 227
Target Start/End: Original strand, 44023827 - 44024032
Alignment:
Q  25 tagggtttgt-cttgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgctctctccc--agat 120  Q
    |||||||||| | |||||||||||||| | |||||||  ||||| ||||||||||||||||| | |||||||||||||||||||||||||||||  ||||    
T  44023827 tagggtttgttcatgtgtaaagcttgacaagctagag--tcttgtaaccttttgtaacactt-cacatattggattggagagctgctctctcccccagat 44023923  T
Q  121 taggccatattggctgaactgggtcaacaatctt-ctcggtgttttgttctt-cctttcttgcttatcttgtttatgcttgttagctctttgtgtgcttt 218  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||     ||||||||||||||||||||||||||||||||| |||    
T  44023924 taggccatattggctgaactgggtcaacaatcttgctcggtgttttgttctttcctttaccatttatcttgtttatgcttgttagctctttgtgtggttt 44024023  T
Q  219 tgttataca 227  Q
    || ||||||    
T  44024024 tgctataca 44024032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 25 - 227
Target Start/End: Original strand, 1054965 - 1055171
Alignment:
Q  25 tagggtttgt-cttgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgctctctccc--agat 120  Q
    |||||||||| | |||||||||||||||| |||||||  ||||| ||||||||||||||||| | ||||||||||||||||| |||||||||||  ||||    
T  1054965 tagggtttgttcatgtgtaaagcttgataagctagag--tcttgtaaccttttgtaacactt-cacatattggattggagagttgctctctcccccagat 1055061  T
Q  121 taggccatattggctgaactgggtcaacaatctt-ctcggtgttttgttctt--cctttcttgcttatcttgtttatgcttgttagctctttgtgtgctt 217  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||  | |||   | ||||||||||||||||||||||||||||||||| ||    
T  1055062 taggccatattggctgaactgggtcaacaatcttgctcggtgttttgttctttccttttaccgtttatcttgtttatgcttgttagctctttgtgtggtt 1055161  T
Q  218 ttgttataca 227  Q
    ||| ||||||    
T  1055162 ttgctataca 1055171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 61 - 192
Target Start/End: Original strand, 24202769 - 24202904
Alignment:
Q  61 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 157  Q
    |||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |     
T  24202769 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggccatattggctgaactgggtcaacaatcttttt 24202868  T
Q  158 ggtgt-tttgttcttcctttcttgcttatcttgttt 192  Q
    ||||| ||||||||||||||||||||||||||||||    
T  24202869 ggtgtgtttgttcttcctttcttgcttatcttgttt 24202904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 30 - 171
Target Start/End: Original strand, 43988422 - 43988566
Alignment:
Q  30 tttgtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctgctctct--cccagattaggc 125  Q
    ||||||||||||||||||||||| ||||||  |||||| ||| |||||||||||| ||| ||||||||||||||||||||||||||  ||||||||||||    
T  43988422 tttgtcttgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccagattaggc 43988519  T
Q  126 catattggctgaactgggtcaacaatctt-ctcggtgttttgttctt 171  Q
    || |||||||||||||||| ||||||||| || ||||||||||||||    
T  43988520 cacattggctgaactgggtaaacaatcttgcttggtgttttgttctt 43988566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 61 - 189
Target Start/End: Original strand, 19361432 - 19361564
Alignment:
Q  61 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 157  Q
    |||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||  | |||||| ||||||| ||||||||||||||||||||| |     
T  19361432 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccatattaggtcatattgactgaactgggtcaacaatctt-tt 19361530  T
Q  158 ggtgt-tttgttcttcc-tttcttgcttatcttg 189  Q
    ||||| ||||||||||| ||||||||||||||||    
T  19361531 ggtgtgtttgttcttccttttcttgcttatcttg 19361564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 61 - 189
Target Start/End: Original strand, 19380072 - 19380204
Alignment:
Q  61 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 157  Q
    |||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||  | |||||| ||||||| ||||||||||||||||||||| |     
T  19380072 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccatattaggtcatattgactgaactgggtcaacaatctt-tt 19380170  T
Q  158 ggtgt-tttgttcttcc-tttcttgcttatcttg 189  Q
    ||||| ||||||||||| ||||||||||||||||    
T  19380171 ggtgtgtttgttcttccttttcttgcttatcttg 19380204  T

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Target: chr1; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 61 - 189
Target Start/End: Original strand, 19358843 - 19358975
Alignment:
Q  61 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 157  Q
    |||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||  | |||||| ||||||| ||||||||||||||||||||| |     
T  19358843 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccatattaggtcatattgactgaactgggtcaacaatctt-tt 19358941  T
Q  158 ggtgt-tttgttcttcc-tttcttgcttatcttg 189  Q
    | ||| ||||||||||| ||||||||||||||||    
T  19358942 gatgtgtttgttcttccttttcttgcttatcttg 19358975  T

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Target: chr1; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 47703946 - 47704033
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| ||||| |||||||||||||||||||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  47703946 cttttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 47704033  T

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Target: chr1; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 26644909 - 26644994
Alignment:
Q  73 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||| ||||| |||||||||||||||||||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  26644909 tttgtaacactttcatcataatggattggagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 26644994  T

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Target: chr1; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 9476348 - 9476261
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    ||||||||| |||||| ||||| ||||||||||||||||||||||||  |||||||| |||||||| | |||||||||||||||||||    
T  9476348 cttttgtaatactttcatcatagtggattggagagctgctctctcccctagattaggtcatattggaccgaactgggtcaacaatctt 9476261  T

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Target: chr1; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 19073015 - 19072928
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| || || |||||||||||||||||||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  19073015 cttttgtaacactttcatcttagtggattggagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 19072928  T

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Target: chr1; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 19120905 - 19120818
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| || || |||||||||||||||||||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  19120905 cttttgtaacactttcatcttagtggattggagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 19120818  T

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Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 13598485 - 13598398
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| ||||| ||||||| || |||||||||||||  |||||||| |||||||| | |||||||||||||||||||    
T  13598485 cttttgtaacactttcatcatagtggattgaagggctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 13598398  T

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Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 16124526 - 16124613
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| ||||| |||||||||| ||||||||||  ||||||||||| |||||||| | |||||| ||||||||||||    
T  16124526 cttttgtaacactttcatcatagtggattggagggctgctctctcccccagattaggtcatattggaccgaactgagtcaacaatctt 16124613  T

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Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 27104382 - 27104469
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| ||||| |||||||||||||||||||||  |||||||||||  ||||||| | |||||| ||||||||||||    
T  27104382 cttttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggttatattggaccgaactgtgtcaacaatctt 27104469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 29651898 - 29651811
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| ||||| |||||||||| ||||||||||  ||||||||||| |||||||| | |||||||||||| ||||||    
T  29651898 cttttgtaacactttcatcatagtggattggagtgctgctctctcccccagattaggtcatattggaccgaactgggtcaaaaatctt 29651811  T

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Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 154
Target Start/End: Complemental strand, 3281793 - 3281708
Alignment:
Q  73 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||| ||||  |||||||||||||||||||||  ||||||||||| |||||||| | |||||||||||| ||||||    
T  3281793 tttgtaacactttcatcatcgtggattggagagctgctctctcccccagattaggtcatattggaccgaactgggtcaataatctt 3281708  T

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Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 154
Target Start/End: Complemental strand, 37069855 - 37069770
Alignment:
Q  73 tttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||| ||||| ||||| |||||| |||||||||||  |||||||| |||||||| | |||||||||||||||||||    
T  37069855 tttgtaacactttcatcatagtggatcggagagatgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 37069770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 775759 - 775672
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| || || |||||||||||||| ||||||  ||||||||||| |||||||| | ||| |||||||||||||||    
T  775759 cttttgtaacactttcatcttagtggattggagagctactctctcccccagattaggtcatattggaccgaattgggtcaacaatctt 775672  T

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Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 47098837 - 47098921
Alignment:
Q  74 ttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    ||||||||||||| || || |||||||||| ||||||||||  |||||||| || |||||||| | |||||||||||||||||||    
T  47098837 ttgtaacactttcatcttagtggattggagggctgctctctcccccagattcggtcatattggaccgaactgggtcaacaatctt 47098921  T

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Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 13604635 - 13604720
Alignment:
Q  73 tttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    ||||||||| |||| ||||| ||||||||||||||||||||||||  | |||||| |||||||  |  ||||||||||||||||||    
T  13604635 tttgtaacattttcatcatagtggattggagagctgctctctcccccatattaggtcatattgaacctaactgggtcaacaatctt 13604720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 21536581 - 21536666
Alignment:
Q  73 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggcca-tattggctgaactgggtcaacaatctt 154  Q
    |||||||||||||| | ||| |||||||||||||||||||||  ||||||||||| || | ||  | |||||||||||||||||||    
T  21536581 tttgtaacactttcattatagtggattggagagctgctctctcccccagattaggtcattttttaccgaactgggtcaacaatctt 21536666  T

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Target: scaffold0135 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 35001 - 35220
Alignment:
Q  11 caaagggtagaatttagggtttgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgct 109  Q
    ||||||||||| | |||||||||| | ||||||||||||||  ||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||    
T  35001 caaagggtagagtctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttctaaccttttgtaacactttctcatattggattggagagctgct 35099  T
Q  110 ctctccc--agattaggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttctt-gcttatcttgtttatgctt-gttagct 205  Q
    |||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    ||||||||||||| ||||| | || ||    
T  35100 ctctcccccagattaggccatattggctgaactgggttaacaatcttctcggtgttttgttcttccttttaccgcttatcttgttt-tgctttggtatct 35198  T
Q  206 ctttgtgtgcttttgttataca 227  Q
    ||||||||| ||||| ||||||    
T  35199 ctttgtgtggttttgctataca 35220  T

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Target: scaffold0464 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 25 - 227
Target Start/End: Complemental strand, 494 - 288
Alignment:
Q  25 tagggtttgt-cttgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaacactttctcatattggattggagagctgctctctccc--agat 120  Q
    |||||||||| | |||||||||||||||| |||||||  ||||| ||||||||||||||||| | |||||||||||||||||||||||||||||  ||||    
T  494 tagggtttgttcatgtgtaaagcttgataagctagag--tcttgtaaccttttgtaacactt-cacatattggattggagagctgctctctcccccagat 398  T
Q  121 taggccatattggctgaactgggtcaacaatctt-ctcggtgttttgttctt--cctttcttgcttatcttgtttatgcttgttagctctttgtgtgctt 217  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||  | |||   | ||||||||||||||||||||||||||||||||| ||    
T  397 taggccatattggctgaactgggtcaacaatcttgctcggtgttttgttctttccttttaccgtttatcttgtttatgcttgttagctctttgtgtggtt 298  T
Q  218 ttgttataca 227  Q
    ||| ||||||    
T  297 ttgctataca 288  T

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Target: scaffold0188 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 61 - 192
Target Start/End: Original strand, 17952 - 18087
Alignment:
Q  61 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 157  Q
    |||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |     
T  17952 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggccatattggctgaactgggtcaacaatcttttt 18051  T
Q  158 ggtgt-tttgttcttcctttcttgcttatcttgttt 192  Q
    ||||| ||||||||||||||||||||||||||||||    
T  18052 ggtgtgtttgttcttcctttcttgcttatcttgttt 18087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 61 - 192
Target Start/End: Original strand, 24045 - 24180
Alignment:
Q  61 ttcttgcaaccttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatcttctc 157  Q
    |||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |     
T  24045 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggccatattggctgaactgggtcaacaatcttttt 24144  T
Q  158 ggtgt-tttgttcttcctttcttgcttatcttgttt 192  Q
    ||||| ||||||||||||||||| ||||||||||||    
T  24145 ggtgtgtttgttcttcctttctttcttatcttgttt 24180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 30 - 228
Target Start/End: Original strand, 2209 - 2410
Alignment:
Q  30 tttgtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctgctctctccc--agattaggc 125  Q
    ||||||||||||||||||||||| ||||||  |||||| ||| |||||||||||| ||| ||||||||||||||||||| |||||||||  |||||||||    
T  2209 tttgtcttgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctactctctcccccagattaggc 2306  T
Q  126 catattggctgaactgggtcaacaatctt-ctcggtgttttgttc---ttcctttcttgcttatcttgtttatgcttgttagctctttgtgtgcttttgt 221  Q
    || |||||||||||||||||||||||||| ||||||| |||||||   ||||||| | | ||||||||  ||||||||||||||||| ||||| |||||     
T  2307 cacattggctgaactgggtcaacaatcttgctcggtg-tttgttcgttttcctttatcgtttatcttg--tatgcttgttagctcttagtgtggttttgc 2403  T
Q  222 tatacat 228  Q
    |||||||    
T  2404 tatacat 2410  T

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Target: scaffold0028 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 30 - 228
Target Start/End: Original strand, 148914 - 149115
Alignment:
Q  30 tttgtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctgctctctccc--agattaggc 125  Q
    ||||||||||||||||||||||| ||||||  |||||| ||| |||||||||||| ||| ||||||||||||||||||| |||||||||  |||||||||    
T  148914 tttgtcttgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctactctctcccccagattaggc 149011  T
Q  126 catattggctgaactgggtcaacaatctt-ctcggtgttttgttc---ttcctttcttgcttatcttgtttatgcttgttagctctttgtgtgcttttgt 221  Q
    || |||||||||||||||||||||||||| ||||||| |||||||   ||||||| | | ||||||||  ||||||||||||||||| ||||| |||||     
T  149012 cacattggctgaactgggtcaacaatcttgctcggtg-tttgttcgttttcctttatcgtttatcttg--tatgcttgttagctcttagtgtggttttgc 149108  T
Q  222 tatacat 228  Q
    |||||||    
T  149109 tatacat 149115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 30 - 214
Target Start/End: Original strand, 14267 - 14455
Alignment:
Q  30 tttgtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctgctctctccc--agattaggc 125  Q
    ||||||||||||||||||||||| ||||||  |||||| ||| |||||||||||| ||| |||||||||||||||||||||||||||||  |||||||||    
T  14267 tttgtcttgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccagattaggc 14364  T
Q  126 catattggctgaactgggtcaacaatctt-ctcggtgttttgttc---ttcctttcttgcttatcttgtttatgcttgttagctctttgtgtg 214  Q
    || |||||||||||||||||||||||||| || ||||||||||||   ||| ||| | | ||||||||  ||||||||||||||||| |||||    
T  14365 cacattggctgaactgggtcaacaatcttgcttggtgttttgttcgttttcttttatcgtttatcttg--tatgcttgttagctcttagtgtg 14455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 30 - 228
Target Start/End: Original strand, 19123 - 19324
Alignment:
Q  30 tttgtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagctgctctctccc--agattaggc 125  Q
    ||||||||||||||||||||||| ||||||  |||||| ||| ||||||||||||  || ||||||| |||||||||||||||||||||  |||||||||    
T  19123 tttgtcttgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacactcacatattgtattggagagctgctctctcccccagattaggc 19220  T
Q  126 catattggctgaactgggtcaacaatctt-ctcggtgttttgttc---ttcctttcttgcttatcttgtttatgcttgttagctctttgtgtgcttttgt 221  Q
    || | |||||||||||||||||||||||| ||||||| |||||||   ||| ||| | | ||||||||  ||||||||||||||||| ||||| |||||     
T  19221 cacaatggctgaactgggtcaacaatcttgctcggtg-tttgttcgttttcttttatcgtttatcttg--tatgcttgttagctcttagtgtggttttgc 19317  T
Q  222 tatacat 228  Q
    |||||||    
T  19318 tatacat 19324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 88 - 214
Target Start/End: Original strand, 181980 - 182110
Alignment:
Q  88 catattggattggagagctgctctctccc--agattaggccatattggctgaactgggtcaacaatctt-ctcggtgttttgttc---ttcctttcttgc 181  Q
    |||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||| || ||||||||||||   ||| ||| | |     
T  181980 catattggattggagagctgctctctcccccagattaggccacattggctgaactgggtcaacaatcttgcttggtgttttgttcgttttcttttatcgt 182079  T
Q  182 ttatcttgtttatgcttgttagctctttgtgtg 214  Q
    ||||||||  ||||||||||||||||| |||||    
T  182080 ttatcttg--tatgcttgttagctcttagtgtg 182110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0978 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0978
Description:

Target: scaffold0978; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 122 - 220
Target Start/End: Original strand, 300 - 398
Alignment:
Q  122 aggccatattggctgaactgggtcaacaatcttctcggtgttttgttcttcctttcttgcttatcttgtttatgc-ttgttagctctttgtgtgcttttg 220  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||| ||||||||||||| ||| || ||| ||||||||||| |||||    
T  300 aggccatattggctgaactaggtcaacaatcttcttggtgttttgttctttctttctagcttatcttgttt-tgctttattatctctttgtgtggttttg 398  T

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Target: scaffold0140 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 8431 - 8516
Alignment:
Q  73 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||| ||||| |||||||||||||||||||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  8431 tttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 8516  T

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Target: scaffold0036 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 153
Target Start/End: Complemental strand, 85768 - 85684
Alignment:
Q  73 tttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatct 153  Q
    |||||||||||||| ||||  ||||||||||||| ||||||||||  |||||||| |||||||| ||||||||||||||||||||    
T  85768 tttgtaacactttcatcatggtggattggagagccgctctctcccccagattaggtcatattggactgaactgggtcaacaatct 85684  T

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Target: scaffold0006 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 5770 - 5683
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| ||||| ||||||| || |||||||||||||  |||||||| |||||||| | |||||||||||||||||||    
T  5770 cttttgtaacactttcatcatagtggattgaagggctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctt 5683  T

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Target: scaffold0006; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 2579 - 2492
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattggct-gaactgggtcaacaatctt 154  Q
    |||||||||||||||| ||||| |||||||||| |||||| ||||||  |||||||| ||||||||   |||||||||||||||||||    
T  2579 cttttgtaacactttcatcatagtggattggagggctgctgtctcccccagattaggtcatattggagcgaactgggtcaacaatctt 2492  T

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Target: scaffold0006; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 133292 - 133377
Alignment:
Q  73 tttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    ||||||||| |||| ||||| ||||||||||||||||||||||||  | |||||| |||||||  |  ||||||||||||||||||    
T  133292 tttgtaacattttcatcatagtggattggagagctgctctctcccccatattaggtcatattgaacctaactgggtcaacaatctt 133377  T

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Target: scaffold0087 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 43973 - 44058
Alignment:
Q  73 tttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||| ||||| |||||||||||||||||||||  |||||| |||  |||||||| | |||||||||||||||||||    
T  43973 tttgtaacactttcatcatagtggattggagagctgctctctcccccagaatagatcatattggaccgaactgggtcaacaatctt 44058  T

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Target: scaffold0087; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 36844 - 36929
Alignment:
Q  73 tttgtaacactttc-tcatattggattggagagctgctctctccc--agattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||| ||||| ||| |||| |||||||||||| ||  |||||||| |||||||| | |||||||||||||||||||    
T  36844 tttgtaacactttcatcatagtgggttggcgagctgctctcttccctagattaggtcatattggaccgaactgggtcaacaatctt 36929  T

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Target: scaffold0148 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 10816 - 10729
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaatctt 154  Q
    |||||||||||||||| || || |||||||||||||||||||||  |||| |||||| |||||||| | |||||||||||| ||||||    
T  10816 cttttgtaacactttcatcttagtggattggagagctgctctctcccccaaattaggtcatattggaccgaactgggtcaataatctt 10729  T

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Target: scaffold0098 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 45337 - 45253
Alignment:
Q  74 ttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattg-gctgaactgggtcaacaatctt 154  Q
    ||||||| ||||| ||||| |||||||||||||||||||||  ||||||||||| |||||||  | |||||| ||||||||||||    
T  45337 ttgtaacgctttcatcatagtggattggagagctgctctctcccccagattaggtcatattgaaccgaactgagtcaacaatctt 45253  T

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Target: scaffold0176 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 151
Target Start/End: Complemental strand, 17350 - 17266
Alignment:
Q  71 cttttgtaacactttc-tcatattggattggagagctgctctct--cccagattaggccatattgg-ctgaactgggtcaacaat 151  Q
    |||||||||||||||| ||||| |||||||||| | ||||||||  |||| |||||| |||||||  | ||||||||||||||||    
T  17350 cttttgtaacactttcatcataatggattggagggttgctctctttcccatattaggtcatattgaaccgaactgggtcaacaat 17266  T

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