View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4256_low_28 (Length: 238)

Name: NF4256_low_28
Description: NF4256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4256_low_28
NF4256_low_28
[»] chr3 (6 HSPs)
chr3 (1-93)||(13612159-13612251)
chr3 (112-188)||(14075418-14075494)
chr3 (107-149)||(14150852-14150894)
chr3 (21-54)||(13612120-13612153)
chr3 (1-74)||(36980867-36980940)
chr3 (1-74)||(37006306-37006379)
[»] chr7 (1 HSPs)
chr7 (107-196)||(36010438-36010527)
[»] chr1 (4 HSPs)
chr1 (2-93)||(13060153-13060244)
chr1 (35-72)||(19275797-19275834)
chr1 (2-72)||(17610960-17611030)
chr1 (2-86)||(5943059-5943143)
[»] chr4 (8 HSPs)
chr4 (2-93)||(13937291-13937382)
chr4 (2-85)||(54131616-54131699)
chr4 (13-74)||(10373874-10373935)
chr4 (2-71)||(30029654-30029723)
chr4 (2-71)||(30045923-30045992)
chr4 (20-74)||(17256377-17256431)
chr4 (45-94)||(24426106-24426155)
chr4 (2-71)||(30059654-30059723)
[»] chr6 (1 HSPs)
chr6 (2-93)||(7339076-7339167)
[»] chr2 (3 HSPs)
chr2 (33-94)||(734816-734877)
chr2 (2-93)||(32738170-32738261)
chr2 (25-74)||(44185512-44185561)
[»] chr5 (2 HSPs)
chr5 (26-74)||(13610480-13610528)
chr5 (2-74)||(33641961-33642033)


Alignment Details
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 13612251 - 13612159
Alignment:
Q  1 ttaaatccagtcaatttcatttgcatgtgtaactattaatttacgagtacttaaaatataatttattttattcttgttgtgtgtatccattaa 93  Q
    ||||||||| | ||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||    
T  13612251 ttaaatccaattaattttatttgcatatgtaactattaatttacgagtacttaacatataatttattttattctagttgtgtatatccattaa 13612159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 14075494 - 14075418
Alignment:
Q  112 aaacaaaaagtatacaaaagttcactaaatccaatacaacaatttcaactgtcaatgacatctaggttgtttaatat 188  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||| |||||  ||| |||||| ||||||||    
T  14075494 aaacaaaaagtatacaaaagtacaataaatccaatacaacaatttcaactttcaataccatgtaggttatttaatat 14075418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 107 - 149
Target Start/End: Complemental strand, 14150894 - 14150852
Alignment:
Q  107 attttaaacaaaaagtatacaaaagttcactaaatccaataca 149  Q
    |||| |||||||||||||||||||||||| |||||||||||||    
T  14150894 atttcaaacaaaaagtatacaaaagttcaataaatccaataca 14150852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 13612153 - 13612120
Alignment:
Q  21 ttgcatgtgtaactattaatttacgagtacttaa 54  Q
    ||||||||||||||||||||||||||||||||||    
T  13612153 ttgcatgtgtaactattaatttacgagtacttaa 13612120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 36980940 - 36980867
Alignment:
Q  1 ttaaatccagtcaatttcatttgcatgtgtaactattaatttacgagtacttaaaatataatttattttattct 74  Q
    ||||||| ||| ||||| |||||  |||| | |||| ||||||||| |||||| ||||| ||||||||||||||    
T  36980940 ttaaatctagttaattttatttgattgtgcatctataaatttacgaatacttataatatgatttattttattct 36980867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 37006379 - 37006306
Alignment:
Q  1 ttaaatccagtcaatttcatttgcatgtgtaactattaatttacgagtacttaaaatataatttattttattct 74  Q
    ||||||| ||| ||||| |||||  |||| | |||| ||||||||| |||||| ||||| ||||||||||||||    
T  37006379 ttaaatctagttaattttatttgattgtgcatctataaatttacgaatacttataatatgatttattttattct 37006306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 107 - 196
Target Start/End: Original strand, 36010438 - 36010527
Alignment:
Q  107 attttaaacaaaaagtatacaaaagttcactaaatccaatacaacaatttcaactgtcaatgacatctaggttgtttaatattaccggta 196  Q
    |||| |||||||||||||||||||||||| |||||| |||||| ||||||||||| ||||||||||||||||||||||| || |||||||    
T  36010438 atttcaaacaaaaagtatacaaaagttcaataaatctaatacagcaatttcaactttcaatgacatctaggttgtttaacatcaccggta 36010527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 13060153 - 13060244
Alignment:
Q  2 taaatccagtcaatttcatttgcatgtgtaactattaatttacgagtacttaaaatataatttattttattcttgttgtgtgtatccattaa 93  Q
    |||||||| | |||||||| |||||||||| |||||||| ||  |||| |||||||||||||||||||||| |  | |||||||||||||||    
T  13060153 taaatccaattaatttcatatgcatgtgtatctattaatctattagtatttaaaatataatttattttattatattcgtgtgtatccattaa 13060244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 19275797 - 19275834
Alignment:
Q  35 attaatttacgagtacttaaaatataatttattttatt 72  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  19275797 attaatttacgagtacttaaaatatgatttattttatt 19275834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 17611030 - 17610960
Alignment:
Q  2 taaatccagtcaatttcatttgcatgtgtaactattaatttacgagtacttaaaatataatttattttatt 72  Q
    |||||||||| ||||||||  ||||||| | |||||||| || || || |||||||||| |||||||||||    
T  17611030 taaatccagttaatttcatccgcatgtgcatctattaatctatgaatatttaaaatatagtttattttatt 17610960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 5943143 - 5943059
Alignment:
Q  2 taaatccagtcaatttcatttgcatgtgtaactattaatttacgagtacttaaaatataatttattttattcttgttgtgtgtat 86  Q
    |||||||| | ||||| || |||||||| | |||| |||||||||||| ||| ||||| || ||||||||| |  ||||||||||    
T  5943143 taaatccaattaattttatctgcatgtgcatctataaatttacgagtatttataatatgatatattttattatatttgtgtgtat 5943059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 13937291 - 13937382
Alignment:
Q  2 taaatccagtcaatttcatttgcatgtgtaactattaatttacgagtacttaaaatataatttattttattcttgttgtgtgtatccattaa 93  Q
    ||||| || |||||||||||||||| ||||  |||||||||||||||| ||||||||| |||| ||||||| |  || | ||||||||||||    
T  13937291 taaatacaatcaatttcatttgcatatgtatttattaatttacgagtatttaaaatatgatttcttttattatatttatatgtatccattaa 13937382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 54131699 - 54131616
Alignment:
Q  2 taaatccagtcaatttcatttgcatgtgtaactattaatttacgagtacttaaaatataatttattttattcttgttgtgtgta 85  Q
    ||||| |||| |||||||| ||  |||||| |||| |||||||||||||||| ||||| ||||||||||||||  |||||||||    
T  54131699 taaattcagttaatttcatatgtctgtgtatctataaatttacgagtacttataatatgatttattttattctatttgtgtgta 54131616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 10373935 - 10373874
Alignment:
Q  13 aatttcatttgcatgtgtaactattaatttacgagtacttaaaatataatttattttattct 74  Q
    |||||||| |||||||||| || |||||||||  ||||||||||||| ||||||| ||||||    
T  10373935 aatttcatctgcatgtgtatctgttaatttacatgtacttaaaatatgatttattctattct 10373874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 30029654 - 30029723
Alignment:
Q  2 taaatccagtcaatttcatttgcatgtgtaactattaatttacgagtacttaaaatataatttattttat 71  Q
    |||||||||| ||||||||  ||||||| | ||||||||||| | |||||||||||||  ||||||||||    
T  30029654 taaatccagttaatttcatccgcatgtgcatctattaatttaagggtacttaaaatatggtttattttat 30029723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 30045923 - 30045992
Alignment:
Q  2 taaatccagtcaatttcatttgcatgtgtaactattaatttacgagtacttaaaatataatttattttat 71  Q
    |||||||||| ||||||||  ||||||| | ||||||||||| | |||||||||||||  ||||||||||    
T  30045923 taaatccagttaatttcatccgcatgtgcatctattaatttaagggtacttaaaatatggtttattttat 30045992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 17256431 - 17256377
Alignment:
Q  20 tttgcatgtgtaactattaatttacgagtacttaaaatataatttattttattct 74  Q
    |||||||||| | ||||||||||| | |||||| |||||| ||||||||||||||    
T  17256431 tttgcatgtgcatctattaatttatgtgtacttgaaatatgatttattttattct 17256377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 24426155 - 24426106
Alignment:
Q  45 gagtacttaaaatataatttattttattcttgttgtgtgtatccattaaa 94  Q
    ||||| |||||||||| ||||||||||| |  ||||||||||||||||||    
T  24426155 gagtatttaaaatatagtttattttattatatttgtgtgtatccattaaa 24426106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 30059654 - 30059723
Alignment:
Q  2 taaatccagtcaatttcatttgcatgtgtaactattaatttacgagtacttaaaatataatttattttat 71  Q
    |||||| ||| |||||||| || ||||| | ||||||||||| | |||||||||||||  ||||||||||    
T  30059654 taaatctagttaatttcatatgtatgtgcatctattaatttaagtgtacttaaaatatggtttattttat 30059723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 7339167 - 7339076
Alignment:
Q  2 taaatccagtcaatttcatttgcatgtgtaactattaatttacgagtacttaaaatataatttattttattcttgttgtgtgtatccattaa 93  Q
    ||||| |||| |||||||| |||||||| |  ||||||| || ||||| |||||||||| ||||||||||| |  | |||||||||||||||    
T  7339167 taaattcagttaatttcatctgcatgtgcatatattaatctatgagtatttaaaatatagtttattttattatattcgtgtgtatccattaa 7339076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 734877 - 734816
Alignment:
Q  33 ctattaatttacgagtacttaaaatataatttattttattcttgttgtgtgtatccattaaa 94  Q
    |||||||||||| |||||||||||||| ||||||||||| ||  ||||||||| | ||||||    
T  734877 ctattaatttacaagtacttaaaatatgatttattttatactatttgtgtgtaccgattaaa 734816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 32738261 - 32738170
Alignment:
Q  2 taaatccagtcaatttcatttgcatgtgtaactattaatttacgagtacttaaaatataatttattttattcttgttgtgtgtatccattaa 93  Q
    ||||| |||| ||||| |||||||| ||||  |||||||||| | ||||||||||||| || || |||||  |  |||||||||||||||||    
T  32738261 taaattcagttaattttatttgcatttgtatgtattaatttatgggtacttaaaatatgatgtactttatgttatttgtgtgtatccattaa 32738170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 44185561 - 44185512
Alignment:
Q  25 atgtgtaactattaatttacgagtacttaaaatataatttattttattct 74  Q
    ||||||| |||||||| || | |||||||||||||| |||||||||||||    
T  44185561 atgtgtatctattaatgtatgggtacttaaaatatagtttattttattct 44185512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 13610528 - 13610480
Alignment:
Q  26 tgtgtaactattaatttacgagtacttaaaatataatttattttattct 74  Q
    |||||| |||| |||||||||||||||| ||||| ||||||||||||||    
T  13610528 tgtgtatctataaatttacgagtacttataatatgatttattttattct 13610480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 33642033 - 33641961
Alignment:
Q  2 taaatccagtcaatttcatttgcatgtgtaactattaatttacgagtacttaaaatataatttattttattct 74  Q
    ||||| |||| |||||||| ||   ||||| |||| |||||||||||||||| ||||| ||||||||||||||    
T  33642033 taaattcagttaatttcatatgtccgtgtatctataaatttacgagtacttataatatgatttattttattct 33641961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University