View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4256_low_29 (Length: 237)
Name: NF4256_low_29
Description: NF4256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4256_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 427299 - 427079
Alignment:
| Q |
1 |
actaaaagtaaatttgacttgcatcaagaaatagtgaagtatagtgtatgtatacaactttatcgtgttttctaaaatataaacaatgaaatagtgtatg |
100 |
Q |
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| T |
427299 |
actaaaagtaaatttgacttgcatcaagaaatagtgaagtatagtgtatgtatacaactttatcgtgttttttaaaatataaacaatgaaatagtgtatg |
427200 |
T |
|
| Q |
101 |
taagtcaaatgannnnnnnaccaaatgcacaaaagaaaatcgataatatgtaaaaataatatttcgagtctaaaactacgctttctaacttcaaattaaa |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
427199 |
taagtcaaatgatttttttaccaaatgcacaaaagaaaatcgataatatgtaaaaataatatttcgagtctaaaactacgctttctaacttcaaattaaa |
427100 |
T |
|
| Q |
201 |
atctattctaaacttaaaagc |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
427099 |
atctattctaaacttaaaagc |
427079 |
T |
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