View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4256_low_3 (Length: 573)
Name: NF4256_low_3
Description: NF4256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4256_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 233 - 556
Target Start/End: Original strand, 3744336 - 3744659
Alignment:
| Q |
233 |
ccttcacagagaatgcattcgaaaggtgaacaagggaaccaaacaaggtcgctacctgtgtccatgtagagtgttatgagttgtggagggtttgaaccta |
332 |
Q |
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| T |
3744336 |
ccttcacagagaatgcattcgaaaggtgaacaagggaaccaaacaaggtcgctacctgtgtccatgtagagtgttatgagttgtggagggtttgaaccta |
3744435 |
T |
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| Q |
333 |
ggttgaaggagagggtgtaatcactacctggagcaagagggagagaaacttgggtttggtgtttgtgatgttggtggtggaaacgagctttggaacgggt |
432 |
Q |
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| T |
3744436 |
ggttgaaggagagggtgtaatcactacctggagcaagagggagagaaacttgggtttggtgtttgtgatgttggtggtggaaacgagctttggaacgggt |
3744535 |
T |
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| Q |
433 |
tgaagttgatttgagaaggtggtgagtactgttgaattgggttttggagattgagtgtgttaagggtaatagaattgtttgagaagaaggtgaaaaacag |
532 |
Q |
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| T |
3744536 |
tgaagttgatttgagaaggtggtgagtactgttgaatttggttttggagattgagtgtgttaagggtaatagaattgtttgagaagaaggtgaaaaacag |
3744635 |
T |
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| Q |
533 |
agtatgaaacagagtagtactaga |
556 |
Q |
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| T |
3744636 |
agtatgaaacagagtagtactaga |
3744659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 3744104 - 3744289
Alignment:
| Q |
1 |
tgtttgtcggtagagattagcgacgaagcttccatcaccataagcgtagtaaaaaggtggacaagaaaaagaagaacaatcagaagtttcgatgaaatct |
100 |
Q |
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| T |
3744104 |
tgtttgttgatacagattagctacgaagcttccatcaccataagcatagtaaaaaggtggacaagaaaaagaagaacaatcagaagtttcgatgtaatct |
3744203 |
T |
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| Q |
101 |
aaaggacaacgtgaaatagcacaaaggttactagaagacatggatgcatgcgctgcggaacatgcaggggattgacaagaaacaga |
186 |
Q |
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| T |
3744204 |
aaaggacaacgtgaaatagcacaaaggttactagaagacatggatgcatgcgctgcggaacatgcaggggattgacaagaaacaga |
3744289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 315
Target Start/End: Complemental strand, 41705561 - 41705481
Alignment:
| Q |
235 |
ttcacagagaatgcattcgaaaggtgaacaagggaaccaaacaaggtcgctacctgtgtccatgtagagtgttatgagttg |
315 |
Q |
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| T |
41705561 |
ttcacagaggatgcagttgaacggtgtgcatgggaaccaaacaaggtcacttcctgtgtccatgtagagagttatgggttg |
41705481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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