View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4256_low_5 (Length: 508)
Name: NF4256_low_5
Description: NF4256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4256_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 101 - 493
Target Start/End: Complemental strand, 5055570 - 5055175
Alignment:
| Q |
101 |
ttcaaattcaactgtcttgcttgaaaaattattattcgaaggctgaacatatata---atcgaaatatatatttttaaacaatgttcttgaagtagcggc |
197 |
Q |
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| T |
5055570 |
ttcaaattcaactgtcttgcatgaaaaattatcatttgaaggctgaacatatatacaaatcgaaatatatatttttaaacaatgttcttgaagtagcggc |
5055471 |
T |
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| Q |
198 |
gtcgtgtctgaataatttgtgacatactaacaactaccattaccggttaattataattataattttgcagaaaaattaagcaacagatcttctgaatgaa |
297 |
Q |
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| T |
5055470 |
gccgtgtctgaataatttgtgacatactaacaactaccattaccggttaataataattataattttgcagaaaaattaagcaacagatcttctgaatgaa |
5055371 |
T |
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| Q |
298 |
aaatattcactaccttaaaaatagggatgtagagaacatgtctagatgacagtcaagcgatcagtcgtaatgtcgtatgagcaagatattagctgactaa |
397 |
Q |
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| T |
5055370 |
aaatattcactaccttaaaaatagggatgtagagaacatgtctagatgacagtcaagcgatcagtcgtaatgtcgtatgagcaagatattagctgactaa |
5055271 |
T |
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| Q |
398 |
ttccaaagtaaataacatagtggtagagataattttgggatgtatagctcagcctacagagtaattaccaaccgtagtaatgttagtcttgatatt |
493 |
Q |
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| T |
5055270 |
ttccaaagtaaataacatagtggtagagataattttgggatgtatagctcagcctacagagtaattaccaaccgtagtcatgttagtcttgatatt |
5055175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 5055672 - 5055636
Alignment:
| Q |
16 |
ctttctccataacaatggggcgacgacaaaaaggcgg |
52 |
Q |
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| T |
5055672 |
ctttctccataacaatggggcgatgacaaaaaggcgg |
5055636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 83
Target Start/End: Complemental strand, 5055599 - 5055569
Alignment:
| Q |
53 |
aatgatcaatcatttcttgtttaagcttctt |
83 |
Q |
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| T |
5055599 |
aatgatcaatcatttcttgtttaagcttctt |
5055569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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