View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4256_low_6 (Length: 502)
Name: NF4256_low_6
Description: NF4256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4256_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 492
Target Start/End: Original strand, 46496386 - 46496857
Alignment:
| Q |
18 |
gcaagggcatttaagaaatatctcgaatgaaatggannnnnnnnngtttggtagtctactcatggcctaattttgctgggcttatggatatgaatatatg |
117 |
Q |
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| T |
46496386 |
gcaagggcatttaagaaatatctcgaatgaaatggattttttt--gtttggtagtctactcatggcctaattttgctgggcttatggatttgaatatatg |
46496483 |
T |
|
| Q |
118 |
attctgtatgtgttatggtgattgcttttttagacatttagcaattgttcacatacatccatcgaactctagtcaattgtcgtttgacatttttaaaatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
46496484 |
attctgtatgtgttatggtgattgcttttttagacatttagcaattgttcacatacatccatcgaatcctagtcaattgtcgtttgacatttttaaaatt |
46496583 |
T |
|
| Q |
218 |
ggtagtcaattgcgttagatgttttttaaatcggcaatctttaaattggatattgatttnnnnnnncgtcaaacgacaattgattaccgttcaatatttc |
317 |
Q |
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||||||||||||| || |||||||||||||||| |||||||||||||||||||||||| ||| |||||| |||||| ||| |||||||||||| |
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| T |
46496584 |
ggtagtcaattgcattcaatgttttttaaatcggaaatctttaaattggatattgattt-aaaaaacgttaaacgataattgactacggttcaatatttc |
46496682 |
T |
|
| Q |
318 |
taggtgcatgcctagagagcaacttgaataaaaacatcattattacctttgcctcgtaggctgaacatgagtattattacctctgtctctctactatgaa |
417 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46496683 |
taggtgcatgtctagagagcaacttgaataaaaacatcattattatgtttgcctcgtaggctgaacatgagtattattacctctgtctctctactatgaa |
46496782 |
T |
|
| Q |
418 |
cttcacctttgagaacacacatcaccgccgaacttgatcatcaaggcttcctctcttaacactttgcaacctttg |
492 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
46496783 |
cttcacctttgagaacacacatcaccgccgaacttgaccatcaaggcttcctctcttaacactttgcaacctttg |
46496857 |
T |
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