View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4256_low_7 (Length: 430)
Name: NF4256_low_7
Description: NF4256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4256_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 21 - 414
Target Start/End: Original strand, 52887156 - 52887550
Alignment:
| Q |
21 |
agtcacatgcgatcgcagaagtcatgtttaatgtttatgatgctgccttgaaattatttaaatatgttctgaaaggagtcatagaacgcatacatttgtg |
120 |
Q |
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| T |
52887156 |
agtcacatgtgatcacagaagtcatgtttaatgtttatgatgttgccttgaaattatttaaatatgttctgaaaggagtcatagaacgcatacatttgtg |
52887255 |
T |
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| Q |
121 |
gaaaaagtatgtgaagatttatactcagatggaagtgaaaagtatgatgtgtattatacttcccttcggttcatagtccatggatgctatctcaaaggag |
220 |
Q |
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| T |
52887256 |
gaaaaagtatgtgaagatttatactcatatggaagtgaaaagtatgatgtgtattatacttcccttcggttcatagtccatagatgctatctcaaaggag |
52887355 |
T |
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| Q |
221 |
ttaggttcttctatcttaggatctcctctttacaagttttccttagacctaaaatacattaatgatatgcaatcagttgatcacaccaaagttgtactta |
320 |
Q |
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| T |
52887356 |
ttaggttcttctatcttaggatatcctctttacaagttttccttagacctaaaatacattaaggatatgcaatcagttg-tcacaccaaagttgtactta |
52887454 |
T |
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| Q |
321 |
tttgcttctttactctgttgatatgaacatcaaatatgattttagcccaacctg--gtgttaactattttcaaaatcaaagagaatgggtttatat |
414 |
Q |
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| T |
52887455 |
tttgcttctttactccgttgatatgaacatcaaatatgattttagcccaacctgatgtgttaactattttcaaaatcaaagagaatgggtttatat |
52887550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 112 - 303
Target Start/End: Complemental strand, 47623722 - 47623538
Alignment:
| Q |
112 |
acatttgtggaaaaagtatgtgaagatttatactcagatggaagtgaaaagtatgatgtgtattatacttcccttcggttcatagtccatggatgctatc |
211 |
Q |
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| T |
47623722 |
acatttgtcaaaatagtatgtgaagatttatactcagatggaagtgaaaattatgatgtgtattatacttcccttcggtttatag-------atgccgtc |
47623630 |
T |
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| Q |
212 |
tcaaaggagttaggttcttctatcttaggatctcctctttacaagttttccttagacctaaaatacattaatgatatgcaatcagttgatca |
303 |
Q |
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| T |
47623629 |
acaaaggagttaggttcttctatcttgggatctcctctgtacaagtttcccttagacctaaagtacattaatgacatgcaatcagtcgatca |
47623538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 51 - 101
Target Start/End: Complemental strand, 47623838 - 47623788
Alignment:
| Q |
51 |
atgtttatgatgctgccttgaaattatttaaatatgttctgaaaggagtca |
101 |
Q |
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| T |
47623838 |
atgtttatgatgctgccttaaagatatttaaatatgttctgaaaggagtca |
47623788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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