View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4256_low_9 (Length: 424)
Name: NF4256_low_9
Description: NF4256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4256_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 68 - 414
Target Start/End: Original strand, 3472633 - 3472995
Alignment:
| Q |
68 |
actatatttacaaagttataatgaacctgggtacaaagcaatttgttggacgagccaaatcaagttctaagtgagcaaagtaagataagtccatgttttc |
167 |
Q |
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| T |
3472633 |
actagatttacaaagttataatgaacctgg-tacaatgcaatttgttggacgagccaaatcaagttgtaagtgagcaaagtaagataagtccacgttttc |
3472731 |
T |
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| Q |
168 |
ctaggcaaaatacttcgttggacgagctaggagtgagctgagagcgagcatggacaaagagttccagggagaaaagcaa-----------------gagc |
250 |
Q |
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| T |
3472732 |
ctaggcaaaatgcttcgttggacgagctaggagtgagctgagagcgagcatggacaaagagttccagggagaaaagcaagagcaacttcattggtcgagc |
3472831 |
T |
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| Q |
251 |
aacatttcaccaactaaggtataacaatttaatgactttgaaagatgagttgtcttttctctccatttgaagaaacctcgagtcgttgggcgagcaacat |
350 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3472832 |
aacatttcgccaactaaggtataacaatttaatgactttgaaagatgagttgtcttctctctccatttgaagaaacctcgagtcgttgggtgagcaacat |
3472931 |
T |
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| Q |
351 |
ttcatccagcaaaactacattttctgccacttataaatagacttgtaaatagtttttagtataa |
414 |
Q |
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| T |
3472932 |
ttcatctagcgaaactacattttctgccacttataaatagacttgtaaatagtttttagtataa |
3472995 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 401
Target Start/End: Original strand, 34273501 - 34273533
Alignment:
| Q |
369 |
attttctgccacttataaatagacttgtaaata |
401 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
34273501 |
attttctgtcacttataaatagacttgtaaata |
34273533 |
T |
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