View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4258-Insertion-3 (Length: 152)

Name: NF4258-Insertion-3
Description: NF4258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4258-Insertion-3
NF4258-Insertion-3
[»] chr7 (1 HSPs)
chr7 (12-148)||(8062355-8062491)
[»] chr2 (1 HSPs)
chr2 (18-130)||(32454880-32454992)
[»] chr1 (3 HSPs)
chr1 (12-136)||(35388791-35388915)
chr1 (18-136)||(9127025-9127143)
chr1 (67-134)||(26173583-26173650)
[»] chr8 (2 HSPs)
chr8 (18-132)||(40038487-40038601)
chr8 (18-136)||(27490442-27490560)
[»] chr3 (1 HSPs)
chr3 (18-130)||(24183478-24183590)
[»] chr4 (1 HSPs)
chr4 (18-134)||(6102805-6102920)
[»] chr6 (2 HSPs)
chr6 (18-130)||(2805196-2805308)
chr6 (18-79)||(13419450-13419511)
[»] scaffold0031 (1 HSPs)
scaffold0031 (18-134)||(106244-106360)


Alignment Details
Target: chr7 (Bit Score: 125; Significance: 1e-64; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 12 - 148
Target Start/End: Original strand, 8062355 - 8062491
Alignment:
Q  12 atgcacttttgctgagctctttggtgtttatcatgatttggtgttggtaataagaaactctattcaacagtttatttacgagattgattctctagaagtc 111  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  8062355 atgcacttttgctgagctctttggtgtttatcatggtttggtgttggtaataagaaactctattcaacaggttatttacgagatggattctctagaagtc 8062454  T
Q  112 ctccgccttcttcaacatccagaccccgcgtatacag 148  Q
    |||||||||||||||||||||||||||||||||||||    
T  8062455 ctccgccttcttcaacatccagaccccgcgtatacag 8062491  T

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Target: chr2 (Bit Score: 81; Significance: 2e-38; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 32454992 - 32454880
Alignment:
Q  18 ttttgctgagctctttggtgtttatcatgatttggtgttggtaataagaaactctattcaacagtttatttacgagattgattctctagaagtcctccgc 117  Q
    ||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||  |||||||| |||| ||||||||| |||||||||||    
T  32454992 ttttgctgagctctttggtatttatcatggtttggtgttggtagtaagaaactctattcaacatgttatttacaagatagattctctacaagtcctccgc 32454893  T
Q  118 cttcttcaacatc 130  Q
    |||||||||||||    
T  32454892 cttcttcaacatc 32454880  T

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Target: chr1 (Bit Score: 81; Significance: 2e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 12 - 136
Target Start/End: Complemental strand, 35388915 - 35388791
Alignment:
Q  12 atgcacttttgctgagctctttggtgtttatcatgatttggtgttggtaataagaaactctattcaacagtttatttacgagattgattctctagaagtc 111  Q
    |||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||  ||||||  ||||| |||||||| ||||||    
T  35388915 atgcacttttgctgagctttttggtgtttatcatggtttgatgttggtaataagaaactctattcaacatgttatttgtgagatagattctcttgaagtc 35388816  T
Q  112 ctccgccttcttcaacatccagacc 136  Q
    |||| ||||||||||||||| ||||    
T  35388815 ctccaccttcttcaacatccggacc 35388791  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 9127143 - 9127025
Alignment:
Q  18 ttttgctgagctctttggtgtttatcatgatttggtgttggtaataagaaactctattcaacagtttatttacgagattgattctctagaagtcctccgc 117  Q
    ||||| |||| | |||||||||||| ||| |||| |||| ||||||| |||||| |||||| || |||||| |||||| |||| ||||| ||| |||| |    
T  9127143 ttttgttgagttatttggtgtttatgatggtttgatgttcgtaataaaaaactcaattcaatagattatttgcgagatagattttctagtagttctcctc 9127044  T
Q  118 cttcttcaacatccagacc 136  Q
    |||||||||||||| ||||    
T  9127043 cttcttcaacatccggacc 9127025  T

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Target: chr1; HSP #3
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 26173583 - 26173650
Alignment:
Q  67 aactctattcaacagtttatttacgagattgattctctagaagtcctccgccttcttcaacatccaga 134  Q
    |||||||||||||   |||||||||| |  |||||| ||||||||||||  ||||||||| |||||||    
T  26173583 aactctattcaacgagttatttacgaaacagattctttagaagtcctccatcttcttcaagatccaga 26173650  T

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Target: chr8 (Bit Score: 79; Significance: 3e-37; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 40038601 - 40038487
Alignment:
Q  18 ttttgctgagctctttggtgtttatcatgatttggtgttggtaataagaaactctattcaacagtttatttacgagattgattctctagaagtcctccgc 117  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||| | | || |||||| |||||||||||||||||| ||    
T  40038601 ttttgctgagctctttggtgtttatcatgatttgacgttggtaataagaaactttattcaacaggtgacttgcgagatagattctctagaagtcctctgc 40038502  T
Q  118 cttcttcaacatcca 132  Q
    |||||||||||||||    
T  40038501 cttcttcaacatcca 40038487  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 27490560 - 27490442
Alignment:
Q  18 ttttgctgagctctttggtgtttatcatgatttggtgttggtaataagaaactctattcaacagtttatttacgagattgattctctagaagtcctccgc 117  Q
    ||||| ||||||||||||||||||||||| ||||  |||| ||| |||||||| |||||||||| ||||||||||||| |||||||| |||||||||       
T  27490560 ttttgttgagctctttggtgtttatcatggtttgaagttgataaaaagaaactatattcaacaggttatttacgagatagattctctggaagtcctctat 27490461  T
Q  118 cttcttcaacatccagacc 136  Q
    |||||| ||||||||||||    
T  27490460 cttctttaacatccagacc 27490442  T

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Target: chr3 (Bit Score: 49; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 24183590 - 24183478
Alignment:
Q  18 ttttgctgagctctttggtgtttatcatgatttggtgttggtaataagaaactctattcaacagtttatttacgagattgattctctagaagtcctccgc 117  Q
    |||||||||| | ||||| |||||||||| |||| |||||||||| |  ||||||||||||||| ||||||  |||||  ||||| ||||||||||||      
T  24183590 ttttgctgagttatttggggtttatcatggtttgatgttggtaatcaacaactctattcaacaggttatttgtgagatgaattctttagaagtcctccat 24183491  T
Q  118 cttcttcaacatc 130  Q
    |||||||||||||    
T  24183490 cttcttcaacatc 24183478  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 6102805 - 6102920
Alignment:
Q  18 ttttgctgagctctttggtgtttatcatgatttggtgttggtaataagaaactctattcaacagtttatttacgagattgattctctagaagtcctccgc 117  Q
    |||||| |||| ||||||||||||| ||| || | |||||||||| | |||| ||||||||||| |||||| | |||| |||| | ||||||| || | |    
T  6102805 ttttgccgagcactttggtgtttattatggttggatgttggtaatcaaaaacgctattcaacaggttatttgcaagatagattatttagaagt-cttcac 6102903  T
Q  118 cttcttcaacatccaga 134  Q
    ||| |||||||||||||    
T  6102904 cttattcaacatccaga 6102920  T

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Target: chr6 (Bit Score: 33; Significance: 0.0000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 2805196 - 2805308
Alignment:
Q  18 ttttgctgagctctttggtgtttatcatgatttggtgttggtaataagaaactctattcaacagtttatttacgagattgattctctagaagtcctccgc 117  Q
    |||||||||||| | ||||||||| |||| |||| |||| ||||| |  ||||||| |||| || |||||| |||||   ||||| | ||||||||||      
T  2805196 ttttgctgagctatctggtgtttaccatggtttgatgtttgtaatgaataactctaatcaataggttatttgcgagagaaattctttggaagtcctccat 2805295  T
Q  118 cttcttcaacatc 130  Q
    |||||||||||||    
T  2805296 cttcttcaacatc 2805308  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 13419511 - 13419450
Alignment:
Q  18 ttttgctgagctctttggtgtttatcatgatttggtgttggtaataagaaactctattcaac 79  Q
    |||||||||||| ||||| |||||||||| |||| |||||| ||| |  |||||||||||||    
T  13419511 ttttgctgagctatttggggtttatcatggtttgatgttggcaatcaacaactctattcaac 13419450  T

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Target: scaffold0031 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 106244 - 106360
Alignment:
Q  18 ttttgctgagctctttggtgtttatcatgatttggtgttggtaataagaaactctattcaacagtttatttacgagattgattctctagaagtcctccgc 117  Q
    ||||| |||||| ||||| ||||| |||| |||  |||||||||| || ||||||||||||    |||||| ||| |  |||||| |||||||| || |     
T  106244 ttttgttgagctatttggcgtttaccatggtttaatgttggtaatcagcaactctattcaatgagttatttgcgaaacagattctttagaagtcttctgt 106343  T
Q  118 cttcttcaacatccaga 134  Q
    ||||||||| |||||||    
T  106344 cttcttcaagatccaga 106360  T

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