View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4258_high_1 (Length: 556)
Name: NF4258_high_1
Description: NF4258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4258_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 463; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 17 - 544
Target Start/End: Original strand, 17753595 - 17754122
Alignment:
| Q |
17 |
agttagagcactagctgaactgaacgagaacgagaacctcagtgatctaaatggtgttgagaagttgaaggctggaggatcaaaatgtttaactctgttc |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
17753595 |
agttagagcactagctgaactgaacgagaacgagaacatcggtgatctaaatggtgttgagaagttgaaggctgtaggatcaaaatgtttaactctgttc |
17753694 |
T |
|
| Q |
117 |
cgtgagtttcaggatacaatcacgaaagtgcactggaaggcaccctgtttcagtggcgatggagagtggttagttggtggttctgctagcaaaggagagc |
216 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17753695 |
cgtgagtttcaagatacaatcacgaaagtgcactggaaggcaccctgtttcagtggcgatggagagtggttagttggtggttctgctagcaaaggagagc |
17753794 |
T |
|
| Q |
217 |
acaagatttacatatgggctagaactggacatcttgtgaaaatccttgaagggcctaaggaagcccttattgatttagcgtggcatcctgtacatcctat |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
17753795 |
acaagatttacatatgggctagaactggacatcttgtgaaaatccttgaagggcctaaggaagcccttattgatttagcatggcatcctgtacatcctat |
17753894 |
T |
|
| Q |
317 |
tgttttgtctgtttctttgagtggcatagtttacatctgggccaaagagtacattgagagctggagtgcttttgctcctgatttcatagagattgaggaa |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17753895 |
tgttttgtctgtttctttgagtggcatagtttatatctgggccaaagagtacattgagagctggagtgcttttgctcctgatttcatagagattgaggaa |
17753994 |
T |
|
| Q |
417 |
aatgaggagtatgtggagcgagaagatgaatttgatttgaagcctgacactgataatgtatgtgaacgttatatggtcataggtcatattannnnnnnct |
516 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| || |
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| T |
17753995 |
aatgaggagtatgtggagcgagaagatgaatttgatttgaagcctgacactgataatgtatgtgaacgttatatggtggtaggtcttattattcttttct |
17754094 |
T |
|
| Q |
517 |
tttccattttatagtctcaaccaagttc |
544 |
Q |
| |
|
|||||||||||| |||| |||||||||| |
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| T |
17754095 |
tttccattttatggtcttaaccaagttc |
17754122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 17 - 544
Target Start/End: Original strand, 17762582 - 17763109
Alignment:
| Q |
17 |
agttagagcactagctgaactgaacgagaacgagaacctcagtgatctaaatggtgttgagaagttgaaggctggaggatcaaaatgtttaactctgttc |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
17762582 |
agttagagcactagctgaactgaacgagaacgagaacatcggtgatctaaatggtgttgagaagttgaaggctgtaggatcaaaatgtttaactctgttc |
17762681 |
T |
|
| Q |
117 |
cgtgagtttcaggatacaatcacgaaagtgcactggaaggcaccctgtttcagtggcgatggagagtggttagttggtggttctgctagcaaaggagagc |
216 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17762682 |
cgtgagtttcaagatacaatcacgaaagtgcactggaaggcaccctgtttcagtggcgatggagagtggttagttggtggttctgctagcaaaggagagc |
17762781 |
T |
|
| Q |
217 |
acaagatttacatatgggctagaactggacatcttgtgaaaatccttgaagggcctaaggaagcccttattgatttagcgtggcatcctgtacatcctat |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
17762782 |
acaagatttacatatgggctagaactggacatcttgtgaaaatccttgaagggcctaaggaagcccttattgatttagcatggcatcctgtacatcctat |
17762881 |
T |
|
| Q |
317 |
tgttttgtctgtttctttgagtggcatagtttacatctgggccaaagagtacattgagagctggagtgcttttgctcctgatttcatagagattgaggaa |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17762882 |
tgttttgtctgtttctttgagtggcatagtttatatctgggccaaagagtacattgagagctggagtgcttttgctcctgatttcatagagattgaggaa |
17762981 |
T |
|
| Q |
417 |
aatgaggagtatgtggagcgagaagatgaatttgatttgaagcctgacactgataatgtatgtgaacgttatatggtcataggtcatattannnnnnnct |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| || |
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|
| T |
17762982 |
aatgaggagtatgtggagcgagaagatgaatttgatttgaagcctgacactgataatgtatgtgaacgttatatggtggtaggtcttattattcttttct |
17763081 |
T |
|
| Q |
517 |
tttccattttatagtctcaaccaagttc |
544 |
Q |
| |
|
|||||||||||| |||| |||||||||| |
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| T |
17763082 |
tttccattttatggtcttaaccaagttc |
17763109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 17 - 507
Target Start/End: Original strand, 17739447 - 17739931
Alignment:
| Q |
17 |
agttagagcactagctgaactgaacgagaacgagaacctcagtgatctaaatggtgttgagaagttgaaggctggaggatcaaaatgtttaactctgttc |
116 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||| |
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|
| T |
17739447 |
agttagagcactagctgaactgaac------gagaacctcggtgatctaaatggtgtagagaagttgaaggctgcaggatcaaaatgtttaactttgttc |
17739540 |
T |
|
| Q |
117 |
cgtgagtttcaggatacaatcacgaaagtgcactggaaggcaccctgtttcagtggcgatggagagtggttagttggtggttctgctagcaaaggagagc |
216 |
Q |
| |
|
||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||| ||||| |||||| | |||||||||||||||||||||||||||| |
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| T |
17739541 |
cgtgagtttcaagatgcaatcacgaaggtgcactggaaggcaccctgtttcagtggtgatggtgagtgggttgttggtggttctgctagcaaaggagagc |
17739640 |
T |
|
| Q |
217 |
acaagatttacatatgggctagaactggacatcttgtgaaaatccttgaagggcctaaggaagcccttattgatttagcgtggcatcctgtacatcctat |
316 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
17739641 |
acaagatttacatatgggatagagctggacatcttgtgaaaatccttgaagggcctaaggaagcccttattgatttagcgtggcatcctgtacgtccaat |
17739740 |
T |
|
| Q |
317 |
tgttttgtctgtttctttgagtggcatagtttacatctgggccaaagagtacattgagagctggagtgcttttgctcctgatttcatagagattgaggaa |
416 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
17739741 |
tgttgtgtctgtttctttgtgtggcatagtttatatctgggccaaagagtacattgagaactggagtgcttttgctcctgatttcaaagagattgaggaa |
17739840 |
T |
|
| Q |
417 |
aatgaggagtatgtggagcgagaagatgaatttgatttgaagcctgacactgataatgtatgtgaacgttatatggtcataggtcatatta |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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|
| T |
17739841 |
aatgaggagtatgtggagcgagaagatgaatttgatttgaatcctgacactgataatgtatgtgaacattatatggtcataggtcttatta |
17739931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 45 - 544
Target Start/End: Original strand, 15735574 - 15736073
Alignment:
| Q |
45 |
aacgagaacctcagtgatctaaatggtgttgagaagttgaaggctggaggatcaaaatgtttaactctgttccgtgagtttcaggatacaatcacgaaag |
144 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||| |||||||||| | |
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|
| T |
15735574 |
aacgagaacctcagtgatctaaacggtgttgagaagttgaaggctgcaggatcaaaatgtttaactttgttccgtgagtttcaagatgcaatcacgaagg |
15735673 |
T |
|
| Q |
145 |
tgcactggaaggcaccctgtttcagtggcgatggagagtggttagttggtggttctgctagcaaaggagagcacaagatttacatatgggctagaactgg |
244 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||| | ||||||||||||||||| |||||||||||||||||||||||||||| |||| |||| |
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|
| T |
15735674 |
tgcactggaaggcaccctgtttcagtggtgatggtgagtgggttgttggtggttctgctagtaaaggagagcacaagatttacatatgggatagagctgg |
15735773 |
T |
|
| Q |
245 |
acatcttgtgaaaatccttgaagggcctaaggaagcccttattgatttagcgtggcatcctgtacatcctattgttttgtctgtttctttgagtggcata |
344 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| | ||||||||||||||||||||| |
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|
| T |
15735774 |
acatcttgtaaaaatccttgaagggcctaaggaagcccttattgatttagcgtggcatcctgtacgtccaattgttgtatctgtttctttgagtggcata |
15735873 |
T |
|
| Q |
345 |
gtttacatctgggccaaagagtacattgagagctggagtgcttttgctcctgatttcatagagattgaggaaaatgaggagtatgtggagcgagaagatg |
444 |
Q |
| |
|
||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
15735874 |
gtttatatctgggccaaagattacattgagaactggagtgcttttgctcctgatttcaaagagatcgaggaaaatgaggagtatgtggagcgagaagatg |
15735973 |
T |
|
| Q |
445 |
aatttgatttgaagcctgacactgataatgtatgtgaacgttatatggtcataggtcatattannnnnnncttttccattttatagtctcaaccaagttc |
544 |
Q |
| |
|
||||||||||||| |||| |||||||| ||||||||||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||| |
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|
| T |
15735974 |
aatttgatttgaatactgagactgataaggtatgtgaacgttatatggtcatagtacttattattctttcattttccattttatggtctcaaccaagttc |
15736073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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