View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4258_high_3 (Length: 368)
Name: NF4258_high_3
Description: NF4258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4258_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 9 - 352
Target Start/End: Complemental strand, 27785446 - 27785102
Alignment:
| Q |
9 |
agcaaaggaaattgaactaaggtctatcggaaaattccagcttaggctatacaatacaagtcatattaatgcagttgaatgaaacaataaaaccatcatg |
108 |
Q |
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| T |
27785446 |
agcaaaggaaattgaactaaggtctatctgaaaattccagcttaggctatacaatacaagtcatattaatgcagttgaatgaaacaataaaaccatcatg |
27785347 |
T |
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| Q |
109 |
ctcattaaggagccagaaaatatcagcatgttatgtaatcaaacagtctggctta-tgtcatggggatggttgaactgttccctatacatcctatatatt |
207 |
Q |
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| T |
27785346 |
ctcattaaggagccagaaaatatcagcatgttatgtaatcaaacagtctggcttaatgtcatggggatggttgaactgttccctatacatcctatatttt |
27785247 |
T |
|
| Q |
208 |
agagtacatagaatgctacttcttcgaatataggccttgtatttcataagccaaaggcatagcaatgccccacctggacaaaaacattgctgaataattg |
307 |
Q |
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| T |
27785246 |
agagtacatagaatgctacttcttcgaatataggccttgtatttcataagccaaaggcatagcaatgccccacctggacaaaaacattgctgaacaattg |
27785147 |
T |
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| Q |
308 |
cagtgtctttctatcatcttgaatttgccgtgtaacaaaatattt |
352 |
Q |
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| T |
27785146 |
cagtgtctttctatcatcttgaatttgccgtgtaacaaaatattt |
27785102 |
T |
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