View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4258_high_4 (Length: 331)
Name: NF4258_high_4
Description: NF4258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4258_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 9 - 324
Target Start/End: Complemental strand, 7466680 - 7466365
Alignment:
| Q |
9 |
aacagattattagtagcttgatgggagagtttgtaatgttatacatttcaggttctggtatgggagctgcggcagtatttgaaaggggagacttctgaga |
108 |
Q |
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| T |
7466680 |
aacagattattagtagcttaatgggagagtttgtactgttatacatttcaggttctggtatgggagctgcggcagtatttgaaaggggagacttctgaga |
7466581 |
T |
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| Q |
109 |
tttgtcgaagtttaaatgcttaggaaattaacaatcgttcatcacaaatatttttgaatttatatgaaataaggaataaaatagaatggagggttcatgc |
208 |
Q |
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| T |
7466580 |
tttgtcgaagtttaaatgcttaggaaattaacaatcgttcatcacaagtatttttgaatttatatgaaataaggaataaaatagaatggagggttcatgc |
7466481 |
T |
|
| Q |
209 |
aaaagaatagagtggaactttaatacatcataattcactaatcaagaaaaccaataaattttgttgttttggatgaaattatgtcttttttgatactgtg |
308 |
Q |
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| T |
7466480 |
aaaagaatagagtggaactttaatacatcataattcactaatcaagaaaaccaataaattttgttgttttggatgaaattatgtcttttttgatactgtg |
7466381 |
T |
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| Q |
309 |
actgttcttcatctca |
324 |
Q |
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|||||||||||||||| |
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| T |
7466380 |
actgttcttcatctca |
7466365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 288
Target Start/End: Original strand, 3929595 - 3929631
Alignment:
| Q |
252 |
aagaaaaccaataaattttgttgttttggatgaaatt |
288 |
Q |
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| T |
3929595 |
aagaaaaccaataaattttgttatttttgatgaaatt |
3929631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 298
Target Start/End: Original strand, 30171788 - 30171837
Alignment:
| Q |
249 |
atcaagaaaaccaataaattttgttgttttggatgaaattatgtcttttt |
298 |
Q |
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| T |
30171788 |
atcaagaaatcaaataaattttgttgtttttgatgaaattttgtgttttt |
30171837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 32835183 - 32835142
Alignment:
| Q |
251 |
caagaaaaccaataaattttgttgttttggatgaaattatgt |
292 |
Q |
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||||||||| ||||||||||||| |||| ||||||||||||| |
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| T |
32835183 |
caagaaaacaaataaattttgttatttttgatgaaattatgt |
32835142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 292
Target Start/End: Complemental strand, 46694344 - 46694296
Alignment:
| Q |
244 |
cactaatcaagaaaaccaataaattttgttgttttggatgaaattatgt |
292 |
Q |
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|||||||||||||| | ||||||||||||| |||| ||||||| ||||| |
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| T |
46694344 |
cactaatcaagaaaccaaataaattttgttatttttgatgaaaatatgt |
46694296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 292
Target Start/End: Original strand, 23526286 - 23526331
Alignment:
| Q |
247 |
taatcaagaaaaccaataaattttgttgttttggatgaaattatgt |
292 |
Q |
| |
|
||||||||||| | ||||||||||||| |||| ||||||||||||| |
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| T |
23526286 |
taatcaagaaaccaaataaattttgttatttttgatgaaattatgt |
23526331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 292
Target Start/End: Complemental strand, 24772139 - 24772091
Alignment:
| Q |
244 |
cactaatcaagaaaaccaataaattttgttgttttggatgaaattatgt |
292 |
Q |
| |
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|||||| ||||||| | ||||||||||||| |||| ||||||||||||| |
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| T |
24772139 |
cactaaccaagaaaccaaataaattttgttatttttgatgaaattatgt |
24772091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 33082788 - 33082836
Alignment:
| Q |
244 |
cactaatcaagaaaaccaataaattttgttgttttggatgaaattatgt |
292 |
Q |
| |
|
|||||| ||||||| | ||||||||||||| |||| ||||||||||||| |
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| T |
33082788 |
cactaaccaagaaatcaaataaattttgttatttttgatgaaattatgt |
33082836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 292
Target Start/End: Complemental strand, 12969973 - 12969925
Alignment:
| Q |
244 |
cactaatcaagaaaaccaataaattttgttgttttggatgaaattatgt |
292 |
Q |
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|||||| ||||||| | ||||||||||||| |||| ||||||||||||| |
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| T |
12969973 |
cactaaccaagaaaccaaataaattttgttatttttgatgaaattatgt |
12969925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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