View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4258_high_5 (Length: 322)

Name: NF4258_high_5
Description: NF4258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4258_high_5
NF4258_high_5
[»] chr8 (9 HSPs)
chr8 (2-309)||(10668114-10668419)
chr8 (249-309)||(29192227-29192287)
chr8 (1-94)||(38139-38232)
chr8 (1-45)||(24068473-24068517)
chr8 (3-106)||(24191537-24191639)
chr8 (1-44)||(39516415-39516458)
chr8 (60-94)||(42793915-42793949)
chr8 (58-94)||(45395885-45395921)
chr8 (1-45)||(43203194-43203238)
[»] chr3 (7 HSPs)
chr3 (1-111)||(10339842-10339950)
chr3 (1-111)||(10301666-10301776)
chr3 (1-92)||(47766822-47766912)
chr3 (1-92)||(48253088-48253178)
chr3 (1-94)||(53809365-53809454)
chr3 (1-41)||(7271512-7271552)
chr3 (58-94)||(14744275-14744311)
[»] chr2 (4 HSPs)
chr2 (249-309)||(33633761-33633821)
chr2 (60-94)||(19397746-19397780)
chr2 (61-91)||(4920044-4920074)
chr2 (61-91)||(45699746-45699776)
[»] chr4 (11 HSPs)
chr4 (1-92)||(47667333-47667423)
chr4 (1-94)||(46795895-46795987)
chr4 (1-92)||(38554084-38554174)
chr4 (1-92)||(56001139-56001230)
chr4 (3-106)||(44499839-44499940)
chr4 (1-92)||(3528345-3528438)
chr4 (1-92)||(29665445-29665535)
chr4 (3-91)||(52137586-52137673)
chr4 (62-94)||(307670-307702)
chr4 (67-106)||(4872090-4872130)
chr4 (1-41)||(36846478-36846518)
[»] chr7 (7 HSPs)
chr7 (2-94)||(17288109-17288202)
chr7 (1-94)||(41515151-41515243)
chr7 (1-45)||(28326307-28326351)
chr7 (2-45)||(43442677-43442720)
chr7 (61-90)||(3330905-3330934)
chr7 (59-92)||(45089669-45089702)
chr7 (58-94)||(35296686-35296722)
[»] chr5 (4 HSPs)
chr5 (1-87)||(10736811-10736896)
chr5 (1-45)||(4124915-4124959)
chr5 (58-92)||(224458-224492)
chr5 (1-94)||(5975911-5976002)
[»] chr1 (5 HSPs)
chr1 (1-94)||(40533469-40533562)
chr1 (1-83)||(48528773-48528854)
chr1 (1-82)||(26803098-26803177)
chr1 (61-91)||(51446712-51446742)
chr1 (61-90)||(27557562-27557591)
[»] scaffold0219 (1 HSPs)
scaffold0219 (3-41)||(7054-7092)
[»] chr6 (1 HSPs)
chr6 (1-37)||(18242232-18242268)


Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 2 - 309
Target Start/End: Original strand, 10668114 - 10668419
Alignment:
Q  2 atttgattgaatgtccattgtatttaatagtgaaccgtcagcacataannnnnnnncacttttcatcatcttctctcttcttcttcctcatatatatcaa 101  Q
    |||||||||||||||||||  || ||| ||||| ||||||||||||||        |||||||| |||||||||||||||||||||||||||||||||||    
T  10668114 atttgattgaatgtccattaaatctaacagtgacccgtcagcacataatttttt--cacttttcttcatcttctctcttcttcttcctcatatatatcaa 10668211  T
Q  102 catttctagannnnnnnccttccaaaatacaaatcaagtgtttttcactgacacagttgagtgagcttattggattcatcattcattttcatctcttatg 201  Q
    |||||  |||       ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10668212 cattttcagatttttttccttccaaaatacaaatcaagtgttttccactgacacagttgagtgagcttattggattcatcattcattttcatctcttatg 10668311  T
Q  202 tccctcttgcacattcacacaacaacatcatnnnnnnnttggactttgaaatccaggatcacacaatacttgaggccatgagaaattcagcttcgaaaca 301  Q
    ||| ||||||||||||||||| |||||||||       |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  10668312 tccttcttgcacattcacacatcaacatcataaacaaattggactttgaaatccaggatcacacaatacttgaggccacgagaaattcagcttcgaaaca 10668411  T
Q  302 tagtgttc 309  Q
    ||||||||    
T  10668412 tagtgttc 10668419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 249 - 309
Target Start/End: Complemental strand, 29192287 - 29192227
Alignment:
Q  249 gaaatccaggatcacacaatacttgaggccatgagaaattcagcttcgaaacatagtgttc 309  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  29192287 gaaatccaggatcacacgatacttgaggccacgagaaattcagcttcgaaacatagtgttc 29192227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 38139 - 38232
Alignment:
Q  1 catttgattgaatgtccattgtatttaatagtgaaccgtcagcacataannnnnnnncacttttcatcatcttctctcttcttcttcctcatat 94  Q
    ||||| |||| ||||||||||||||||| |||||||||||||||| |||        ||||||||||||||||||||||||| |||||||||||    
T  38139 catttaattgcatgtccattgtatttaacagtgaaccgtcagcacctaatttttttccacttttcatcatcttctctcttctccttcctcatat 38232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 24068473 - 24068517
Alignment:
Q  1 catttgattgaatgtccattgtatttaatagtgaaccgtcagcac 45  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||    
T  24068473 catttgattgcatgtccattgtatctaatagtgaaccgtcagcac 24068517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 24191537 - 24191639
Alignment:
Q  3 tttgattgaatgtccattgtatttaatagtgaaccgtcagcacataannnnnnnncacttttcatcatcttctctcttcttcttcctc-atatatatcaa 101  Q
    |||||||| ||||||||||||| || ||||||||||||||||| |||         | |||||||||||||||||||||||||||||| || ||||||||    
T  24191537 tttgattgcatgtccattgtatcta-tagtgaaccgtcagcacctaatttttttt-atttttcatcatcttctctcttcttcttcctcaatctatatcaa 24191634  T
Q  102 cattt 106  Q
    |||||    
T  24191635 cattt 24191639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 39516458 - 39516415
Alignment:
Q  1 catttgattgaatgtccattgtatttaatagtgaaccgtcagca 44  Q
    |||||||||| ||||||||||||| |||||||||||||||||||    
T  39516458 catttgattgcatgtccattgtatctaatagtgaaccgtcagca 39516415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 94
Target Start/End: Original strand, 42793915 - 42793949
Alignment:
Q  60 cttttcatcatcttctctcttcttcttcctcatat 94  Q
    |||||||||||||||||||||||||||||||||||    
T  42793915 cttttcatcatcttctctcttcttcttcctcatat 42793949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 45395921 - 45395885
Alignment:
Q  58 cacttttcatcatcttctctcttcttcttcctcatat 94  Q
    ||||||||||||||||| |||||||||||||||||||    
T  45395921 cacttttcatcatcttccctcttcttcttcctcatat 45395885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 43203238 - 43203194
Alignment:
Q  1 catttgattgaatgtccattgtatttaatagtgaaccgtcagcac 45  Q
    |||||||||| ||||||||||||||||| |||||||  |||||||    
T  43203238 catttgattgcatgtccattgtatttaaaagtgaactatcagcac 43203194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 10339950 - 10339842
Alignment:
Q  1 catttgattgaatgtccattgtatttaatagtgaaccgtcagcacataannnnnnnncacttttcatcatcttctctcttcttcttcctcatatatatca 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||        ||||||||||||||||||||||||||| || | || |||||||    
T  10339950 catttgattgaatgtccattgtatttaacagtgaaccgtcagcacataa-tttttttcacttttcatcatcttctctcttcttcctcat-atctatatca 10339853  T
Q  101 acatttctaga 111  Q
    |||||||||||    
T  10339852 acatttctaga 10339842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 10301776 - 10301666
Alignment:
Q  1 catttgattgaatgtccattgtatttaatagtgaaccgtcagcacataannnnnnnncacttttcatcatcttctctcttcttcttcctcata--tatat 98  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||        |||||| |||||||||||||||||||||||||||||  |||||    
T  10301776 catttgattgaatgtccattgtatttaacagtgaaccatcagcacataattttttt-cacttt-catcatcttctctcttcttcttcctcatatctatat 10301679  T
Q  99 caacatttctaga 111  Q
    |||||||||||||    
T  10301678 caacatttctaga 10301666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 47766912 - 47766822
Alignment:
Q  1 catttgattgaatgtccattgtatttaatagtgaaccgtcagcacataannnnnnnncacttttcatcatcttctctcttcttcttcctcat 92  Q
    |||||||||| ||||||||||||| |||||||||||||||||||| |||        ||||||| ||||||||||||||||||||| |||||    
T  47766912 catttgattgcatgtccattgtatctaatagtgaaccgtcagcacctaa-tttttttcacttttgatcatcttctctcttcttctttctcat 47766822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 48253088 - 48253178
Alignment:
Q  1 catttgattgaatgtccattgtatttaatagtgaaccgtcagcacataannnnnnnncacttttcatcatcttctctcttcttcttcctcat 92  Q
    |||||||||| ||||||||||||| ||||||||||| |||| ||| |||        || ||||| ||||||||||||||||||||||||||    
T  48253088 catttgattgcatgtccattgtatctaatagtgaactgtcaacacctaa-tttttttcatttttcttcatcttctctcttcttcttcctcat 48253178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 53809454 - 53809365
Alignment:
Q  1 catttgattgaatgtccattgtatttaatagtgaaccgtcagcacataannnnnnnncacttttcatcatcttctctcttcttcttcctcatat 94  Q
    |||||||||| ||||| ||||||||||| |||||| ||||||||| |||        ||||||   ||||||||||||||||||||||||||||    
T  53809454 catttgattgcatgtctattgtatttaacagtgaatcgtcagcacctaa-tttttttcacttt---tcatcttctctcttcttcttcctcatat 53809365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 7271552 - 7271512
Alignment:
Q  1 catttgattgaatgtccattgtatttaatagtgaaccgtca 41  Q
    |||||||||| ||||||||||||||| |||||||| |||||    
T  7271552 catttgattgcatgtccattgtattttatagtgaatcgtca 7271512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 14744275 - 14744311
Alignment:
Q  58 cacttttcatcatcttctctcttcttcttcctcatat 94  Q
    ||||||||||||||||| || ||||||||||||||||    
T  14744275 cacttttcatcatcttccctgttcttcttcctcatat 14744311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 249 - 309
Target Start/End: Original strand, 33633761 - 33633821
Alignment:
Q  249 gaaatccaggatcacacaatacttgaggccatgagaaattcagcttcgaaacatagtgttc 309  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  33633761 gaaatccaggatcacacgatacttgaggccacgagaaattcagcttcgaaacatagtgttc 33633821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 94
Target Start/End: Original strand, 19397746 - 19397780
Alignment:
Q  60 cttttcatcatcttctctcttcttcttcctcatat 94  Q
    |||||||||||||||||||||||||||||||||||    
T  19397746 cttttcatcatcttctctcttcttcttcctcatat 19397780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 91
Target Start/End: Original strand, 4920044 - 4920074
Alignment:
Q  61 ttttcatcatcttctctcttcttcttcctca 91  Q
    |||||||||||||||||||||||||||||||    
T  4920044 ttttcatcatcttctctcttcttcttcctca 4920074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 91
Target Start/End: Original strand, 45699746 - 45699776
Alignment:
Q  61 ttttcatcatcttctctcttcttcttcctca 91  Q
    |||||||||||||||||||||||||||||||    
T  45699746 ttttcatcatcttctctcttcttcttcctca 45699776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 47667333 - 47667423
Alignment:
Q  1 catttgattgaatgtccattgtatttaatagtgaaccgtcagcacataannnnnnnncacttttcatcatcttctctcttcttcttcctcat 92  Q
    |||||||||| ||||||||||||| |||||||||||||||||||| |||        |||||||||||||||||||||||||||||||||||    
T  47667333 catttgattgcatgtccattgtatctaatagtgaaccgtcagcacctaa-tttttttcacttttcatcatcttctctcttcttcttcctcat 47667423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 46795987 - 46795895
Alignment:
Q  1 catttgattgaatgtccattgtatttaatagtgaaccgtcagcacataannnnnnnncacttttcatcatcttctctcttcttcttcctcatat 94  Q
    |||||||||| ||||||||||||||||||||||||||||| |||| |||        ||||||||||||||||||||||||| |||||||||||    
T  46795987 catttgattgcatgtccattgtatttaatagtgaaccgtcggcacctaa-tttttttcacttttcatcatcttctctcttctccttcctcatat 46795895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 38554084 - 38554174
Alignment:
Q  1 catttgattgaatgtccattgtatttaatagtgaaccgtcagcacataannnnnnnncacttttcatcatcttctctcttcttcttcctcat 92  Q
    |||||||| | | |||||||||||||||||||||||||||| ||| |||        |||||||||||||||||||||||||||||||||||    
T  38554084 catttgatcgcacgtccattgtatttaatagtgaaccgtcatcacttaattttttt-cacttttcatcatcttctctcttcttcttcctcat 38554174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 56001230 - 56001139
Alignment:
Q  1 catttgattgaatgtccattgtatttaatagtgaaccgtcagcacataannnnnnnncacttttcatcatcttctctcttcttcttcctcat 92  Q
    |||||||||| ||||||||||||| |||||||||| |||| |||| |||        ||||||||||| ||||||||||||||| |||||||    
T  56001230 catttgattgcatgtccattgtatctaatagtgaatcgtcggcacctaatttttttccacttttcatcttcttctctcttcttcctcctcat 56001139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 44499940 - 44499839
Alignment:
Q  3 tttgattgaatgtccattgtatttaatagtgaaccgtcagcacataannnnnnnncacttttcatcatcttctctcttcttcttcctc-atatatatcaa 101  Q
    |||||||| ||||||||||||| || ||||||||||||||||| |||         | |||||||||||||||||||||||||||||| || ||||||||    
T  44499940 tttgattgcatgtccattgtatcta-tagtgaaccgtcagcacctaattttttt--atttttcatcatcttctctcttcttcttcctcaatctatatcaa 44499844  T
Q  102 cattt 106  Q
    |||||    
T  44499843 cattt 44499839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 3528345 - 3528438
Alignment:
Q  1 catttgattgaatgtccattgtatttaatagtgaaccgtcagcacataa--nnnnnnnncacttttcatcatcttctctcttcttcttcctcat 92  Q
    |||||||||| ||||||||||||| |||||||||||||||| ||| |||          |||||||||||||||||||||||| || |||||||    
T  3528345 catttgattgcatgtccattgtatctaatagtgaaccgtcaacacctaattttatttttcacttttcatcatcttctctcttcctcctcctcat 3528438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 29665535 - 29665445
Alignment:
Q  1 catttgattgaatgtccattgtatttaatagtgaaccgtcagcacataannnnnnnncacttttcatcatcttctctcttcttcttcctcat 92  Q
    |||||||||| ||||||||||||| |||| |||||||||||  || |||        |||||||| ||||||||||||||||||||||||||    
T  29665535 catttgattgcatgtccattgtatctaattgtgaaccgtcaatacctaattttttt-cacttttcttcatcttctctcttcttcttcctcat 29665445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 52137586 - 52137673
Alignment:
Q  3 tttgattgaatgtccattgtatttaatagtgaaccgtcagcacataannnnnnnncacttttcatcatcttctctcttcttcttcctca 91  Q
    |||||||| ||||||||| || ||| ||||||||||||||||  |||        || |||||||||||||||||||||||||||||||    
T  52137586 tttgattgcatgtccattatactta-tagtgaaccgtcagcagctaattttttttcatttttcatcatcttctctcttcttcttcctca 52137673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 94
Target Start/End: Complemental strand, 307702 - 307670
Alignment:
Q  62 tttcatcatcttctctcttcttcttcctcatat 94  Q
    ||||||||||||||||||||| |||||||||||    
T  307702 tttcatcatcttctctcttctccttcctcatat 307670  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 106
Target Start/End: Complemental strand, 4872130 - 4872090
Alignment:
Q  67 tcatcttctctcttcttcttcctc-atatatatcaacattt 106  Q
    |||||||||||||||||||||||| || |||||||||||||    
T  4872130 tcatcttctctcttcttcttcctcaatctatatcaacattt 4872090  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 36846518 - 36846478
Alignment:
Q  1 catttgattgaatgtccattgtatttaatagtgaaccgtca 41  Q
    |||||||||| ||||||||| ||||||| ||||||||||||    
T  36846518 catttgattgcatgtccattatatttaacagtgaaccgtca 36846478  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 17288202 - 17288109
Alignment:
Q  2 atttgattgaatgtccattgtatttaatagtgaaccgtcagcacataa-nnnnnnnncacttttcatcatcttctctcttcttcttcctcatat 94  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||         ||||||||||||||||||||||||| |||||||||||    
T  17288202 atttgattgcatgtccattgtatttaatagtgaaccgtcagcacctaattttttttccacttttcatcatcttctctcttctccttcctcatat 17288109  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 41515151 - 41515243
Alignment:
Q  1 catttgattgaatgtccattgtatttaatagtgaaccgtcagcacataannnnnnnncacttttcatcatcttctctcttcttcttcctcatat 94  Q
    |||||||||| ||||||||| ||||||||||||||||||| |||| |||        |||||||||| |||||||||||||| |||||||||||    
T  41515151 catttgattgcatgtccattatatttaatagtgaaccgtcggcacctaa-tttttttcacttttcataatcttctctcttctccttcctcatat 41515243  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 28326351 - 28326307
Alignment:
Q  1 catttgattgaatgtccattgtatttaatagtgaaccgtcagcac 45  Q
    |||||||||| ||||||||| ||||||||||||||||||| ||||    
T  28326351 catttgattgcatgtccattatatttaatagtgaaccgtcggcac 28326307  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 43442720 - 43442677
Alignment:
Q  2 atttgattgaatgtccattgtatttaatagtgaaccgtcagcac 45  Q
    ||||||||| |||||| |||||||||| ||||||||||||||||    
T  43442720 atttgattgcatgtccgttgtatttaacagtgaaccgtcagcac 43442677  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 90
Target Start/End: Original strand, 3330905 - 3330934
Alignment:
Q  61 ttttcatcatcttctctcttcttcttcctc 90  Q
    ||||||||||||||||||||||||||||||    
T  3330905 ttttcatcatcttctctcttcttcttcctc 3330934  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 92
Target Start/End: Original strand, 45089669 - 45089702
Alignment:
Q  59 acttttcatcatcttctctcttcttcttcctcat 92  Q
    ||||||| ||||||||||||||||||||||||||    
T  45089669 acttttcttcatcttctctcttcttcttcctcat 45089702  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 35296722 - 35296686
Alignment:
Q  58 cacttttcatcatcttctctcttcttcttcctcatat 94  Q
    ||||||||||||||||| || ||||||||||||||||    
T  35296722 cacttttcatcatcttccctattcttcttcctcatat 35296686  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 10736896 - 10736811
Alignment:
Q  1 catttgattgaatgtccattgtatttaatagtgaaccgtcagcacataannnnnnnncacttttcatcatcttctctcttcttcttc 87  Q
    |||||||||||||||||||||||| |||||||||||||||| ||| |||        |||||| |||||||||||||||||||||||    
T  10736896 catttgattgaatgtccattgtatctaatagtgaaccgtcaacacttaa-tttttttcactttccatcatcttctctcttcttcttc 10736811  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 4124915 - 4124959
Alignment:
Q  1 catttgattgaatgtccattgtatttaatagtgaaccgtcagcac 45  Q
    |||||||||| || |||||||||||||||||||||||||||||||    
T  4124915 catttgattgtatatccattgtatttaatagtgaaccgtcagcac 4124959  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 92
Target Start/End: Complemental strand, 224492 - 224458
Alignment:
Q  58 cacttttcatcatcttctctcttcttcttcctcat 92  Q
    |||||||||||||||||||||||||||||||||||    
T  224492 cacttttcatcatcttctctcttcttcttcctcat 224458  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 5975911 - 5976002
Alignment:
Q  1 catttgattgaatgtccattgtatttaatagtgaaccgtcagcacataannnnnnnncacttttcatcatcttctctcttcttcttcctcatat 94  Q
    |||||||||| ||||||||| | ||||||||  ||||||| |||| |||        ||||||||||||||||||||||||| |||||||||||    
T  5975911 catttgattgcatgtccattatgtttaatag--aaccgtcggcacctaattttttttcacttttcatcatcttctctcttctccttcctcatat 5976002  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 40533562 - 40533469
Alignment:
Q  1 catttgattgaatgtccattgtatttaatagtgaaccgtcagcacataannnnnnnncacttttcatcatcttctctcttcttcttcctcatat 94  Q
    |||| ||||| |||||||||||| |||||||||||||||| |||| |||        | |||||||||||||||||||||||||||||| ||||    
T  40533562 cattggattgcatgtccattgtaattaatagtgaaccgtcggcacctaatttattttcgcttttcatcatcttctctcttcttcttcctgatat 40533469  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 48528854 - 48528773
Alignment:
Q  1 catttgattgaatgtccattgtatttaatagtgaaccgtcagcacataannnnnnnncacttttcatcatcttctctcttctt 83  Q
    |||| ||||| |||||||||||||||||||||||||||||| ||| |||        ||||||||||||||||||||||||||    
T  48528854 cattagattgcatgtccattgtatttaatagtgaaccgtcaacacctaa-ttattttcacttttcatcatcttctctcttctt 48528773  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 26803177 - 26803098
Alignment:
Q  1 catttgattgaatgtccattgtatttaatagtgaaccgtcagcacataannnnnnnncacttttcatcatcttctctcttct 82  Q
    |||||||||| ||||||||||||||||| |||||||| ||| ||| |||        |||||||||||||||||||||||||    
T  26803177 catttgattgcatgtccattgtatttaacagtgaaccttcaccacctaa--ttttttcacttttcatcatcttctctcttct 26803098  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 91
Target Start/End: Complemental strand, 51446742 - 51446712
Alignment:
Q  61 ttttcatcatcttctctcttcttcttcctca 91  Q
    |||||||||||||||||||||||||||||||    
T  51446742 ttttcatcatcttctctcttcttcttcctca 51446712  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 90
Target Start/End: Complemental strand, 27557591 - 27557562
Alignment:
Q  61 ttttcatcatcttctctcttcttcttcctc 90  Q
    ||||||||||||||||||||||||||||||    
T  27557591 ttttcatcatcttctctcttcttcttcctc 27557562  T

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Target: scaffold0219 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 7054 - 7092
Alignment:
Q  3 tttgattgaatgtccattgtatttaatagtgaaccgtca 41  Q
    |||||||| ||||||||| ||||||||||||||||||||    
T  7054 tttgattgcatgtccattatatttaatagtgaaccgtca 7092  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 18242268 - 18242232
Alignment:
Q  1 catttgattgaatgtccattgtatttaatagtgaacc 37  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  18242268 catttgattgcatgtccattgtattttatagtgaacc 18242232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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