View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4259-Insertion-1 (Length: 171)

Name: NF4259-Insertion-1
Description: NF4259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4259-Insertion-1
NF4259-Insertion-1
[»] chr2 (5 HSPs)
chr2 (6-171)||(15452169-15452334)
chr2 (10-171)||(15462079-15462240)
chr2 (6-121)||(15442830-15442945)
chr2 (6-112)||(15436455-15436561)
chr2 (57-116)||(15427088-15427147)


Alignment Details
Target: chr2 (Bit Score: 138; Significance: 2e-72; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 6 - 171
Target Start/End: Original strand, 15452169 - 15452334
Alignment:
Q  6 catctctctcatttcaaacttgaaatttataagtgattgctgaattgcaccatgagttctaaacagccaagcattcagcaggttctttacccaactacaa 105  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  15452169 catctctctcatttcaaacttgaaatttataagttattgctgaattgcaccatgagttctaaacagccaagcactcagcaggttctttacccaactacaa 15452268  T
Q  106 ggccatcatcatcatcaacagcaacagcccctaaaccctcggggactaaacgtccaaccatggaca 171  Q
    |||||||||| |||||||| ||||| ||||||||||||||||| ||||||| ||||||||||||||    
T  15452269 ggccatcatcgtcatcaactgcaactgcccctaaaccctcgggaactaaacctccaaccatggaca 15452334  T

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Target: chr2; HSP #2
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 10 - 171
Target Start/End: Original strand, 15462079 - 15462240
Alignment:
Q  10 tctctcatttcaaacttgaaatttataagtgattgctgaattgcaccatgagttctaaacagccaagcattcagcaggttctttacccaactacaaggcc 109  Q
    ||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15462079 tctctcattccaaacttgaaatttagaagttattgctgaattgcaccatgagttctaaacagccaagcattcagcaggttctttacccaactacaaggcc 15462178  T
Q  110 atcatcatcatcaacagcaacagcccctaaaccctcggggactaaacgtccaaccatggaca 171  Q
    ||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  15462179 atcttcgtcatcaacagcaactgcccctaaaccctcggggactaaacgtccaaccatggaca 15462240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 6e-45
Query Start/End: Original strand, 6 - 121
Target Start/End: Original strand, 15442830 - 15442945
Alignment:
Q  6 catctctctcatttcaaacttgaaatttataagtgattgctgaattgcaccatgagttctaaacagccaagcattcagcaggttctttacccaactacaa 105  Q
    |||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |    
T  15442830 catctctctcatttcaaagttgaaatttacaagttattgctgaattgcaccatgagttctaaacagccaagcattcagaaagttctttacccaactacta 15442929  T
Q  106 ggccatcatcatcatc 121  Q
    ||||||||||||||||    
T  15442930 ggccatcatcatcatc 15442945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 15436455 - 15436561
Alignment:
Q  6 catctctctcatttcaaacttgaaatttataagtgattgctgaattgcaccatgagttctaaacagccaagcattcagcaggttctttacccaactacaa 105  Q
    ||||||||||||||||||||||||||||||||||  ||| | ||||||||||||||||||||||| |||||||||||| | |||||||| ||||| ||||    
T  15436455 catctctctcatttcaaacttgaaatttataagttgttggttaattgcaccatgagttctaaacacccaagcattcagaaagttctttatccaacaacaa 15436554  T
Q  106 ggccatc 112  Q
    |||||||    
T  15436555 ggccatc 15436561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 57 - 116
Target Start/End: Original strand, 15427088 - 15427147
Alignment:
Q  57 atgagttctaaacagccaagcattcagcaggttctttacccaactacaaggccatcatca 116  Q
    |||||||||||| |  ||||||||||| | |||||||| ||||| || ||||||||||||    
T  15427088 atgagttctaaaaacacaagcattcagaaagttctttatccaaccactaggccatcatca 15427147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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