View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4259-Insertion-10 (Length: 70)
Name: NF4259-Insertion-10
Description: NF4259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4259-Insertion-10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 62; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-27
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 51479321 - 51479390
Alignment:
| Q |
1 |
catattaatattttatgtaatatttaagccatgaggtgcataaatatgcttctatcatatccttgcaagt |
70 |
Q |
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| T |
51479321 |
catattaatattatatgtaatatttaagccatgaggtgcataaatatgcttatatcatatccttgcaagt |
51479390 |
T |
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Target: chr2 (Bit Score: 46; Significance: 5e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-18
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 7770204 - 7770253
Alignment:
| Q |
2 |
atattaatattttatgtaatatttaagccatgaggtgcataaatatgctt |
51 |
Q |
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| T |
7770204 |
atattaatattatatgtaatatttaagccatgaggtgcataaatatgctt |
7770253 |
T |
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Target: chr6 (Bit Score: 36; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 8198149 - 8198208
Alignment:
| Q |
1 |
catattaatattttatgtaatatttaagccatgaggtgcataaatatgcttctatcatat |
60 |
Q |
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| T |
8198149 |
catattagtattatatgtaatacttcagccatgtggtgcgtaaatatgcttctatcatat |
8198208 |
T |
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