View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4259-Insertion-20 (Length: 120)

Name: NF4259-Insertion-20
Description: NF4259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4259-Insertion-20
NF4259-Insertion-20
[»] chr8 (4 HSPs)
chr8 (5-120)||(9810397-9810512)
chr8 (5-120)||(18177461-18177575)
chr8 (5-85)||(26953159-26953239)
chr8 (20-89)||(21278061-21278130)
[»] scaffold0015 (1 HSPs)
scaffold0015 (5-120)||(15256-15371)
[»] chr7 (3 HSPs)
chr7 (7-120)||(20489519-20489632)
chr7 (7-89)||(21116708-21116790)
chr7 (58-100)||(10326465-10326507)
[»] chr1 (3 HSPs)
chr1 (5-100)||(39285185-39285280)
chr1 (7-89)||(27876015-27876097)
chr1 (20-65)||(20637963-20638008)
[»] chr5 (1 HSPs)
chr5 (5-92)||(30303180-30303267)
[»] chr4 (3 HSPs)
chr4 (5-92)||(23061054-23061141)
chr4 (5-100)||(37840473-37840567)
chr4 (27-93)||(43990968-43991034)
[»] chr2 (1 HSPs)
chr2 (5-92)||(28591665-28591752)
[»] chr6 (3 HSPs)
chr6 (5-105)||(13107861-13107961)
chr6 (10-83)||(32894336-32894409)
chr6 (5-92)||(25906056-25906143)
[»] chr3 (2 HSPs)
chr3 (5-86)||(1018449-1018530)
chr3 (10-97)||(42435324-42435411)


Alignment Details
Target: chr8 (Bit Score: 116; Significance: 2e-59; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 2e-59
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 9810512 - 9810397
Alignment:
Q  5 cgtctatggtgggtcgaagcaaagaagcgacatttggtttcattaaggaccgtatttggcacacaattaatagttggagtagcaagtgcttatccatggc 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9810512 cgtctatggtgggtcgaagcaaagaagcgacatttggtttcattaaggaccgtatttggcacacaattaatagttggagtagcaagtgcttatccatggc 9810413  T
Q  105 ttgtagaggggtaatg 120  Q
    ||||||||||||||||    
T  9810412 ttgtagaggggtaatg 9810397  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 18177461 - 18177575
Alignment:
Q  5 cgtctatggtgggtcgaagcaaagaagcgacatttggtttcattaaggaccgtatttggcacacaattaatagttggagtagcaagtgcttatccatggc 104  Q
    |||||||||||||  |||||||||| |||||||||||||| || ||||||  ||||||||||| ||||||||||| ||| ||||||||||| |||| |||    
T  18177461 cgtctatggtgggcagaagcaaagaggcgacatttggttttataaaggactatatttggcacaaaattaatagtt-gagcagcaagtgcttgtccaaggc 18177559  T
Q  105 ttgtagaggggtaatg 120  Q
    | || ||| |||||||    
T  18177560 tggtggagaggtaatg 18177575  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 26953239 - 26953159
Alignment:
Q  5 cgtctatggtgggtcgaagcaaagaagcgacatttggtttcattaaggaccgtatttggcacacaattaatagttggagta 85  Q
    |||||||||||||  |||| ||||| ||||| |||||||| || ||||||| ||||||||||| |||||| ||||||||||    
T  26953239 cgtctatggtgggcagaagtaaagaggcgacttttggttttatcaaggaccatatttggcacaaaattaacagttggagta 26953159  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 21278130 - 21278061
Alignment:
Q  20 gaagcaaagaagcgacatttggtttcattaaggaccgtatttggcacacaattaatagttggagtagcaa 89  Q
    |||| ||||| || |||||||  || || ||||||||||||||||||| ||||||||||||||| |||||    
T  21278130 gaagtaaagaggcaacatttgactttataaaggaccgtatttggcacaaaattaatagttggagcagcaa 21278061  T

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Target: scaffold0015 (Bit Score: 88; Significance: 9e-43; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 88; E-Value: 9e-43
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 15371 - 15256
Alignment:
Q  5 cgtctatggtgggtcgaagcaaagaagcgacatttggtttcattaaggaccgtatttggcacacaattaatagttggagtagcaagtgcttatccatggc 104  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||    
T  15371 cgtctatggtgggtcgaagcaaagaggcaacatttggtttcattaaggactgtatttggcacaaaattaatagttggagtagcaagtgcttatccaaggc 15272  T
Q  105 ttgtagaggggtaatg 120  Q
    | |||||| |||||||    
T  15271 tagtagagaggtaatg 15256  T

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Target: chr7 (Bit Score: 54; Significance: 2e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 7 - 120
Target Start/End: Original strand, 20489519 - 20489632
Alignment:
Q  7 tctatggtgggtcgaagcaaagaagcgacatttggtttcattaaggaccgtatttggcacacaattaatagttggagtagcaagtgcttatccatggctt 106  Q
    |||||||||| | |||||||||| || ||||||||||||||||||||  ||||||| |||| |||||||||||||||||||| |||  |||||| || |     
T  20489519 tctatggtggattgaagcaaagaggcaacatttggtttcattaaggagtgtatttgccacaaaattaatagttggagtagcatgtgagtatccaaggttg 20489618  T
Q  107 gtagaggggtaatg 120  Q
    |||||| |||||||    
T  20489619 gtagagaggtaatg 20489632  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 21116708 - 21116790
Alignment:
Q  7 tctatggtgggtcgaagcaaagaagcgacatttggtttcattaaggaccgtatttggcacacaattaatagttggagtagcaa 89  Q
    |||||||| ||||||||||||||||| || || || || ||||| || ||||||||||||| ||| |||  ||||||||||||    
T  21116708 tctatggttggtcgaagcaaagaagctactttcggatttattaaagatcgtatttggcacaaaatcaattcttggagtagcaa 21116790  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 100
Target Start/End: Complemental strand, 10326507 - 10326465
Alignment:
Q  58 atttggcacacaattaatagttggagtagcaagtgcttatcca 100  Q
    |||||||||| ||||||||||| |||||| |||||||||||||    
T  10326507 atttggcacaaaattaatagttagagtagtaagtgcttatcca 10326465  T

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Target: chr1 (Bit Score: 52; Significance: 3e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 5 - 100
Target Start/End: Original strand, 39285185 - 39285280
Alignment:
Q  5 cgtctatggtgggtcgaagcaaagaagcgacatttggtttcattaaggaccgtatttggcacacaattaatagttggagtagcaagtgcttatcca 100  Q
    |||||||||||||| |||||||||| |||| |||||  ||||| ||||| |  |||||||||| |||||||||||||||||||||||| |||||||    
T  39285185 cgtctatggtgggtagaagcaaagaggcgatatttgccttcatcaaggatctcatttggcacaaaattaatagttggagtagcaagtgtttatcca 39285280  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 27876015 - 27876097
Alignment:
Q  7 tctatggtgggtcgaagcaaagaagcgacatttggtttcattaaggaccgtatttggcacacaattaatagttggagtagcaa 89  Q
    |||||||||||  |||| ||||| || |||||||| || || ||||| ||||||||||||| ||||||||||| ||| |||||    
T  27876015 tctatggtgggcagaagtaaagaggcaacatttggctttataaaggatcgtatttggcacaaaattaatagtttgagcagcaa 27876097  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 20637963 - 20638008
Alignment:
Q  20 gaagcaaagaagcgacatttggtttcattaaggaccgtatttggca 65  Q
    |||||||||||||||| ||||| |||||||||||||  ||||||||    
T  20637963 gaagcaaagaagcgacttttggcttcattaaggaccacatttggca 20638008  T

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Target: chr5 (Bit Score: 48; Significance: 7e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 7e-19
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 30303180 - 30303267
Alignment:
Q  5 cgtctatggtgggtcgaagcaaagaagcgacatttggtttcattaaggaccgtatttggcacacaattaatagttggagtagcaagtg 92  Q
    |||||||||||||  |||| ||||| ||||| |||||||| || ||||||||||||||||||| |||||| ||||||||||| |||||    
T  30303180 cgtctatggtgggcagaagtaaagaggcgacttttggttttatcaaggaccgtatttggcacaaaattaacagttggagtagtaagtg 30303267  T

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Target: chr4 (Bit Score: 48; Significance: 7e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 7e-19
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 23061141 - 23061054
Alignment:
Q  5 cgtctatggtgggtcgaagcaaagaagcgacatttggtttcattaaggaccgtatttggcacacaattaatagttggagtagcaagtg 92  Q
    |||||||||||||  |||| ||||| ||||| |||||||| || ||||||||||||||||||| |||||| ||||||||||| |||||    
T  23061141 cgtctatggtgggcagaagtaaagaggcgacttttggttttatcaaggaccgtatttggcacaaaattaacagttggagtagtaagtg 23061054  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 7e-19
Query Start/End: Original strand, 5 - 100
Target Start/End: Complemental strand, 37840567 - 37840473
Alignment:
Q  5 cgtctatggtgggtcgaagcaaagaagcgacatttggtttcattaaggaccgtatttggcacacaattaatagttggagtagcaagtgcttatcca 100  Q
    |||||||||| |||||||||||||| || |||||  ||| |||||||||||  ||||| |||| ||||||||||||||| ||||||||||||||||    
T  37840567 cgtctatggtaggtcgaagcaaagaggcaacattcagtt-cattaaggaccacatttgacacaaaattaatagttggagcagcaagtgcttatcca 37840473  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 43991034 - 43990968
Alignment:
Q  27 agaagcgacatttggtttcattaaggaccgtatttggcacacaattaatagttggagtagcaagtgc 93  Q
    |||||| || ||||| |||||||||||||| |||||||||| ||| ||  ||||||| |||||||||    
T  43991034 agaagcaacttttggcttcattaaggaccgcatttggcacaaaataaactgttggagcagcaagtgc 43990968  T

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Target: chr2 (Bit Score: 48; Significance: 7e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 7e-19
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 28591752 - 28591665
Alignment:
Q  5 cgtctatggtgggtcgaagcaaagaagcgacatttggtttcattaaggaccgtatttggcacacaattaatagttggagtagcaagtg 92  Q
    |||||||||||||  |||| ||||| ||||| |||||||| || ||||||||||||||||||| |||||| ||||||||||| |||||    
T  28591752 cgtctatggtgggcagaagtaaagaggcgacttttggttttatcaaggaccgtatttggcacaaaattaacagttggagtagtaagtg 28591665  T

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Target: chr6 (Bit Score: 45; Significance: 4e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 13107961 - 13107861
Alignment:
Q  5 cgtctatggtgggtcgaagcaaagaagcgacatttggtttcattaaggaccgtatttggcacacaattaatagttggagtagcaagtgcttatccatggc 104  Q
    |||||||| ||||  |||| ||||| | |||||||||||| || |||||||||||||| |||| ||||||||||| ||| ||||||||||| |||| |||    
T  13107961 cgtctatgttgggcagaagtaaagaggtgacatttggttttataaaggaccgtatttgacacaaaattaatagttagagcagcaagtgcttgtccaaggc 13107862  T
Q  105 t 105  Q
    |    
T  13107861 t 13107861  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 10 - 83
Target Start/End: Original strand, 32894336 - 32894409
Alignment:
Q  10 atggtgggtcgaagcaaagaagcgacatttggtttcattaaggaccgtatttggcacacaattaatagttggag 83  Q
    ||||||||  |||| ||||| || |||||||| || || ||||||||||||||||||| |||||||||||||||    
T  32894336 atggtgggcagaagtaaagaggcaacatttggctttataaaggaccgtatttggcacaaaattaatagttggag 32894409  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 25906143 - 25906056
Alignment:
Q  5 cgtctatggtgggtcgaagcaaagaagcgacatttggtttcattaaggaccgtatttggcacacaattaatagttggagtagcaagtg 92  Q
    |||||||||||||  |||| ||||| | ||| |||| ||| || ||||||||||||||| ||| |||||| | ||||||||| |||||    
T  25906143 cgtctatggtgggcagaagtaaagaggtgacttttgattttatcaaggaccgtatttggtacaaaattaacaattggagtagtaagtg 25906056  T

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Target: chr3 (Bit Score: 38; Significance: 0.0000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 1018530 - 1018449
Alignment:
Q  5 cgtctatggtgggtcgaagcaaagaagcgacatttggtttcattaaggaccgtatttggcacacaattaatagttggagtag 86  Q
    |||||||||||||  |||| ||||| | ||  |||||||| || ||||||||||||||||||| |||||| |||||||||||    
T  1018530 cgtctatggtgggcagaagtaaagaggagaattttggttttatcaaggaccgtatttggcacaaaattaacagttggagtag 1018449  T

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Target: chr3; HSP #2
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 42435324 - 42435411
Alignment:
Q  10 atggtgggtcgaagcaaagaagcgacatttggtttcattaaggaccgtatttggcacacaattaatagttggagtagcaagtgcttat 97  Q
    ||||||||| |||| |||||||| || ||  | || || ||||||||||||| ||||| ||| |||||||||||  ||||||| ||||    
T  42435324 atggtgggtagaagtaaagaagcaaccttcagatttatcaaggaccgtatttagcacaaaatcaatagttggagccgcaagtgtttat 42435411  T

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