View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4259-Insertion-3 (Length: 231)
Name: NF4259-Insertion-3
Description: NF4259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4259-Insertion-3 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 5 - 231
Target Start/End: Complemental strand, 38300874 - 38300648
Alignment:
| Q |
5 |
ataaacttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaagg |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38300874 |
ataaacttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaagg |
38300775 |
T |
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| Q |
105 |
agtacttttgctagaatacttgtcaaatagcatgtacaacttgctctttacttgttgcaacttcctttcacgtgttgatgcatcaagttttgagtaacaa |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38300774 |
agtacttttgctagaatacttgtcaaatagcatgtacaacttgctctttacttgttgcaacttcctttcacgtgttgatgcatcaagttttgagtaacaa |
38300675 |
T |
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| Q |
205 |
ttagccaatgttgaaagcttaatcctt |
231 |
Q |
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||||||||||||||||||||||||||| |
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| T |
38300674 |
ttagccaatgttgaaagcttaatcctt |
38300648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 9 - 231
Target Start/End: Complemental strand, 38309517 - 38309295
Alignment:
| Q |
9 |
acttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagta |
108 |
Q |
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|||||||||||||||||| | ||||||||| |||||||||| ||| ||||||| ||||||||||||||||| || |||||||||||| ||||| |||| |
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| T |
38309517 |
acttacatcaaataggccctgagataaagactttaacttcttttgcaatggcacactagaagattggtcctgaattgttctttgcacgccagaagaagta |
38309418 |
T |
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| Q |
109 |
cttttgctagaatacttgtcaaatagcatgtacaacttgctctttacttgttgcaacttcctttcacgtgttgatgcatcaagttttgagtaacaattag |
208 |
Q |
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| T |
38309417 |
cttttgcaagaattcttgtgaaatagcatgtacaacttgctctttacttgctgcaacttcctttcgcaggttgatgcattaagttttgagtaacaataag |
38309318 |
T |
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| Q |
209 |
ccaatgttgaaagcttaatcctt |
231 |
Q |
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||||||| |||||||| |||||| |
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| T |
38309317 |
ccaatgtggaaagctttatcctt |
38309295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 5 - 229
Target Start/End: Complemental strand, 38321619 - 38321395
Alignment:
| Q |
5 |
ataaacttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaagg |
104 |
Q |
| |
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|||||||||||||||||||||||| |||| |||| || || |||| ||| ||||||||||||||||||| |||||| ||| |||||||||| | ||||| |
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| T |
38321619 |
ataaacttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccccagaaga |
38321520 |
T |
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| Q |
105 |
agtacttttgctagaatacttgtcaaatagcatgtacaacttgctctttacttgttgcaacttcctttcacgtgttgatgcatcaagttttgagtaacaa |
204 |
Q |
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| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| | || |||||||||||||||||||| |
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| T |
38321519 |
aatacttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttgagtaacaa |
38321420 |
T |
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| Q |
205 |
ttagccaatgttgaaagcttaatcc |
229 |
Q |
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| T |
38321419 |
tgagccaatgtagaaaacttcatcc |
38321395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 5 - 229
Target Start/End: Complemental strand, 38317524 - 38317300
Alignment:
| Q |
5 |
ataaacttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaagg |
104 |
Q |
| |
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|||||||||||| |||||||||| ||||||||| ||||| |||| ||| ||||||||| |||||||||||||||| || |||||| | || ||||| |
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| T |
38317524 |
ataaacttacattgaataggccgtgagataaagactttaatttcttttgcaatggcatggtagaagattggtcctgagtagttctttttaggccagaaga |
38317425 |
T |
|
| Q |
105 |
agtacttttgctagaatacttgtcaaatagcatgtacaacttgctctttacttgttgcaacttcctttcacgtgttgatgcatcaagttttgagtaacaa |
204 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| || | ||||||| ||||||||||||||||||| |
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| T |
38317424 |
agtgcttttgctagaatacttgtcaaatagcatgtacaactttctctttactagttgcaacttctgctcgcaggttgatggatcaagttttgagtaacaa |
38317325 |
T |
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| Q |
205 |
ttagccaatgttgaaagcttaatcc |
229 |
Q |
| |
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| |||||| || |||| ||| |||| |
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| T |
38317324 |
taagccaacgtcgaaaacttcatcc |
38317300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 5 - 229
Target Start/End: Complemental strand, 38326369 - 38326145
Alignment:
| Q |
5 |
ataaacttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaagg |
104 |
Q |
| |
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|||||||||| |||||| |||| ||||||||| || | |||| ||| |||| |||| | ||||||||| |||| | | ||||||||| || ||||| |
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| T |
38326369 |
ataaacttaccccaaatataccgtgagataaagacttggagttcttttgcaatgacatggtcgaagattggccctgaacagttctttgcatgccagaaga |
38326270 |
T |
|
| Q |
105 |
agtacttttgctagaatacttgtcaaatagcatgtacaacttgctctttacttgttgcaacttcctttcacgtgttgatgcatcaagttttgagtaacaa |
204 |
Q |
| |
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||||| || ||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38326269 |
agtacgttggctagaatacttgccaaatagcatgtacaacttcgtccttacttgttgcaacttcctttcacaggttgatgcatcaagttttgagtaacaa |
38326170 |
T |
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| Q |
205 |
ttagccaatgttgaaagcttaatcc |
229 |
Q |
| |
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| |||||||||||||| ||||||| |
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| T |
38326169 |
taagccaatgttgaaaatttaatcc |
38326145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 8 - 212
Target Start/End: Complemental strand, 38306768 - 38306564
Alignment:
| Q |
8 |
aacttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagt |
107 |
Q |
| |
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||||||||||||||||||| | ||||||||| | | |||| ||| ||||||||| ||||||||||| |||| | | || |||||| | ||||| ||| |
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| T |
38306768 |
aacttacatcaaataggccatgagataaagactcagagttcttttgcaatggcatggtagaagattggccctgaacagttgtttgcataccagaagaagt |
38306669 |
T |
|
| Q |
108 |
acttttgctagaatacttgtcaaatagcatgtacaacttgctctttacttgttgcaacttcctttcacgtgttgatgcatcaagttttgagtaacaatta |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||| ||||||| ||| |||||||||||||||| | |
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| T |
38306668 |
acttttgctagaatacttgtcaaatagcatgtacaactttgtctttactttttgcaacttccgttcacaagttgatggatcgagttttgagtaacaatca |
38306569 |
T |
|
| Q |
208 |
gccaa |
212 |
Q |
| |
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||||| |
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| T |
38306568 |
gccaa |
38306564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 46 - 220
Target Start/End: Complemental strand, 38314072 - 38313898
Alignment:
| Q |
46 |
ttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtacttttgctagaatacttgtcaaatagcatgtacaact |
145 |
Q |
| |
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|||| ||| ||||||||| ||||||||||| ||| ||| || ||||||| | ||||| ||||||||||||||| |||||| |||||||||||||||||| |
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| T |
38314072 |
ttcttttgcaatggcatggtagaagattggccctaaatagttgtttgcaccctagaagaagtacttttgctagagtacttggcaaatagcatgtacaact |
38313973 |
T |
|
| Q |
146 |
tgctctttacttgttgcaacttcctttcacgtgttgatgcatcaagttttgagtaacaattagccaatgttgaaa |
220 |
Q |
| |
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| ||||||||| ||||||||||| ||||| ||||||| ||| ||||||||||||||| ||||||| |||||| |
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| T |
38313972 |
ttgtctttactttttgcaacttccgttcacaagttgatggatctagttttgagtaacaagcagccaatcttgaaa |
38313898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 7 - 217
Target Start/End: Original strand, 38849814 - 38850033
Alignment:
| Q |
7 |
aaacttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctg---------gataattctttgcacgc |
97 |
Q |
| |
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|||||||||||||||||||| | ||||||||| ||||| |||| ||| |||||||||||||||||||||||||| ||| ||||||| || | |
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| T |
38849814 |
aaacttacatcaaataggccatgagataaagactttaatttcttttgtaatggcatgctagaagattggtcctgattctccttaatagttctttgaaccc |
38849913 |
T |
|
| Q |
98 |
aagaaggagtacttttgctagaatacttgtcaaatagcatgtacaacttgctctttacttgttgcaacttcctttcacgtgttgatgcatcaagttttga |
197 |
Q |
| |
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|| || ||| || |||| ||||| ||| |||||||||||| ||||||| ||||||||||| || | ||||||||||| ||||||||||| |||||||| |
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| T |
38849914 |
cagcagtagtgctgttgccagaatgcttctcaaatagcatgcacaactttctctttacttgctgtagcttcctttcacaggttgatgcatccagttttga |
38850013 |
T |
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| Q |
198 |
gtaacaattagccaatgttg |
217 |
Q |
| |
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||||||| |||||| |||| |
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| T |
38850014 |
ataacaataagccaaggttg |
38850033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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