View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4259_high_10 (Length: 406)
Name: NF4259_high_10
Description: NF4259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4259_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 9 - 388
Target Start/End: Original strand, 26517302 - 26517681
Alignment:
| Q |
9 |
gaagcaaaggtacaaatacttaactcctaacaacgtcgtgtttactatccataatcttctatgagtaaaaatcaacaaccattttgtagatatcagattt |
108 |
Q |
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| T |
26517302 |
gaagcaaaggtacaaatacttaactcctaacaacgtcgtgtttactatccataatcttctatgagtaaaaatcaacaaccattttgtagatatcagattt |
26517401 |
T |
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| Q |
109 |
cgggtttgcaaagctaatgcaagaaggacaagagatacatgtaactgccggagtactcggcacatttgggtattttgaccccgagtatacatcggtatgc |
208 |
Q |
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| T |
26517402 |
cgggtttgcaaagctaatgccagaaggacaagagatacatgtaactgccggagtactcggcacatttgggtattttgaccccgagtatacatcggtatgc |
26517501 |
T |
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| Q |
209 |
atagctaaatttcatttgcaaaaaagttttgttcttatggcttattaaagtgatattgacgaccattttattccatgagcagactgggaaactaactcta |
308 |
Q |
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| T |
26517502 |
atagctaaatttcatttgcaaaaaagttttgttcttatggcttattaaagtgatattgacgaccattttattccatgagcagactgggaaactaactcta |
26517601 |
T |
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| Q |
309 |
caaagtgatgtctatgcttatggtgttgttcttctggagcttttgacaggacgtcgcgctgtagatctaaaccagggtcc |
388 |
Q |
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| T |
26517602 |
caaagtgatgtttatgcttatggtgttgttcttctggagcttttgacaggacgtcgcgctgtagatctaaaccagggtcc |
26517681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 288 - 389
Target Start/End: Original strand, 15244324 - 15244425
Alignment:
| Q |
288 |
cagactgggaaactaactctacaaagtgatgtctatgcttatggtgttgttcttctggagcttttgacaggacgtcgcgctgtagatctaaaccagggtc |
387 |
Q |
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| T |
15244324 |
cagacagggaaactcactctccaaagtgatgtttatgcttttggtgtagttcttctggagcttttgaccggacgtcgagctgtagatctcaaccagggtc |
15244423 |
T |
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| Q |
388 |
ct |
389 |
Q |
| |
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|| |
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| T |
15244424 |
ct |
15244425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 92 - 210
Target Start/End: Original strand, 15243668 - 15243786
Alignment:
| Q |
92 |
ttgtagatatcagatttcgggtttgcaaagctaatgcaagaaggacaagagatacatgtaactgccggagtactcggcacatttgggtattttgaccccg |
191 |
Q |
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||||||||||| ||||||||| |||| ||| |||||| ||||||||| |||| ||| || |||||| |||| |||||||||||||| || ||||| |||| |
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| T |
15243668 |
ttgtagatatctgatttcgggcttgccaagttaatgccagaaggacaggagacacacgtgactgccagagtcctcggcacatttggttactttgatcccg |
15243767 |
T |
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| Q |
192 |
agtatacatcggtatgcat |
210 |
Q |
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||||||||||||||||||| |
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| T |
15243768 |
agtatacatcggtatgcat |
15243786 |
T |
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