View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4259_high_11 (Length: 395)
Name: NF4259_high_11
Description: NF4259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4259_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 12 - 379
Target Start/End: Complemental strand, 10481754 - 10481387
Alignment:
| Q |
12 |
aatactctatttatttgaacctagcgatagttattatttatttgagtaaaaaagtgttattttttatagccatttaataggaaagtgttatgtctactag |
111 |
Q |
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| T |
10481754 |
aatactctatttatttgaacctagcgatagttattatttatttgagtaaacaagtgttattttttatagccatttaataggaaagtgttatttctactag |
10481655 |
T |
|
| Q |
112 |
tagataagtctatccaacataaataaataaagaatcaaacagaaaaatgaaaaggattgatttttgtttaagactgccaggtaacgcaaacatggtggtg |
211 |
Q |
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| T |
10481654 |
tagataagtctatccaacataaataaataaagaatcaaacagaaaaatgaaaaggattgatttttgtttaagactgccaggtaacgcaaacatggtggtg |
10481555 |
T |
|
| Q |
212 |
gatctcttaagatgcaaaggtttagtctcccaagtattattctctcgtacttaatagtctctaatattttgccgcatttatgttggtctctaatatttca |
311 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10481554 |
gatctcttaagattcaaaggtttagtctcccaagtattattctctcgtacttaatagtctctaatattttgccgcatttatgttggtctctaatatttca |
10481455 |
T |
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| Q |
312 |
gcaatatataagtttcatatactttaatgcatttaagtacaaagaaacgtacaactaaatgaattaaa |
379 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
10481454 |
gcaatatataagtttcatatactttaatgcattaaagtacaaagaaacgtacaactaaatgaattaaa |
10481387 |
T |
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