View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4259_high_14 (Length: 342)
Name: NF4259_high_14
Description: NF4259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4259_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 13 - 326
Target Start/End: Complemental strand, 49134291 - 49133968
Alignment:
| Q |
13 |
ttctcaataccttccatgagcacaattgttcataagagttgcactacaaaagccacaaaaccaaatgacacatacctcagacattattacccaaggaacc |
112 |
Q |
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| T |
49134291 |
ttctcaataccttccatgagcacaattgttcataagagttgcactacaaaagccacaaaaccaaatgacacatacctcagacattattacccaaggaacc |
49134192 |
T |
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| Q |
113 |
ggtcccattccaattgaaaatgctgctacatatatctga----------tacaatttcaggtcaaatatgcttaaagaatgtatgtgattaactaacatt |
202 |
Q |
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| T |
49134191 |
ggtcccattccaattgaaaatgctgctacatatatctgacacaatttgatacaatttcaggtcaaatatgcttaaagaatgtatgtgattaactaacatt |
49134092 |
T |
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| Q |
203 |
tcattaactcaaattccttaatcacattttcaaattagactcaccagaatgccggcaacagctaatattggtaccaactcaagcagcaagttctgatcct |
302 |
Q |
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| T |
49134091 |
tcattaactcaaattccttaatcacattttcaaattagactcaccagaatgccggcaacagctaatattggtaccaactcaagcagcaagttctgatcct |
49133992 |
T |
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| Q |
303 |
gatccatggaattatacacaaagt |
326 |
Q |
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| T |
49133991 |
gatccatggaattatacacaaagt |
49133968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 6928083 - 6928025
Alignment:
| Q |
82 |
acatacctcagacattattacccaaggaaccggtcccattccaattgaaaatgctgcta |
140 |
Q |
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| T |
6928083 |
acatacctcagacatcatcacccaaggaactgatcccaacccaattgaaaatgctgcta |
6928025 |
T |
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