View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4259_high_15 (Length: 339)

Name: NF4259_high_15
Description: NF4259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4259_high_15
NF4259_high_15
[»] chr3 (3 HSPs)
chr3 (19-334)||(53287582-53287897)
chr3 (249-312)||(52545684-52545746)
chr3 (94-201)||(52806045-52806152)
[»] chr6 (1 HSPs)
chr6 (19-334)||(11841916-11842231)
[»] chr1 (4 HSPs)
chr1 (22-329)||(23618017-23618313)
chr1 (22-329)||(23649359-23649655)
chr1 (94-329)||(23627176-23627405)
chr1 (22-329)||(23734986-23735280)


Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 19 - 334
Target Start/End: Original strand, 53287582 - 53287897
Alignment:
Q  19 gtattgatatcgtcctatagtgatttctgatttcattctttcttatttttactagaaagaacacaggaaacacaggaagagcattctttggctgtattga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53287582 gtattgatatcgtcctatagtgatttctgatttcattctttcttatttttactagaaagaacacaggaaacacaggaagagcattctttggctgtattga 53287681  T
Q  119 tgctcaaactcaatctagtggaccttctctttagacgtgcaccttgtaaccctcttccttattattggtgcggctatgtgaggactcattctggtggctg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  53287682 tgctcaaactcaatctagtggaccttctctttagacgtgcaccttgtaaccctcttccttattattggtgcggctatgtgaggactcagtctggtggctg 53287781  T
Q  219 ttcaagggttaaatcttcagcttctacccacaacctacctgatcaagaaacccaggcaagttttttctgcaaatgttaccaaagtttatggggccgttag 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53287782 ttcaagggttaaatcttcagcttctacccacaacctacctgatcaagaaacccaggcaagttttttctgcaaatgttaccaaagtttatggggccgttag 53287881  T
Q  319 caatgcctttgcttct 334  Q
    |||||| |||| ||||    
T  53287882 caatgcttttgattct 53287897  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 312
Target Start/End: Original strand, 52545684 - 52545746
Alignment:
Q  249 caacctacctgatcaagaaacccaggcaagttttttctgcaaatgttaccaaagtttatggggc 312  Q
    |||||||| |||| |||||||||| ||||||||||| |||| |||||| |||||||||||||||    
T  52545684 caacctacgtgattaagaaacccaagcaagtttttt-tgcatatgttaacaaagtttatggggc 52545746  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 201
Target Start/End: Complemental strand, 52806152 - 52806045
Alignment:
Q  94 gaagagcattctttggctgtattgatgctcaaactcaatctagtggaccttctctttagacgtgcaccttgtaaccctcttccttattattggtgcggct 193  Q
    |||||| ||||||| | || ||| ||||||||||||||||||||||   ||||||||||||     ||  ||   ||||||||||||||||||| |||||    
T  52806152 gaagaggattcttttgttggattcatgctcaaactcaatctagtggctgttctctttagactcaggccccgtgggcctcttccttattattggtccggct 52806053  T
Q  194 atgtgagg 201  Q
    ||||||||    
T  52806052 atgtgagg 52806045  T

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Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 334
Target Start/End: Complemental strand, 11842231 - 11841916
Alignment:
Q  19 gtattgatatcgtcctatagtgatttctgatttcattctttcttatttttactagaaagaacacaggaaacacaggaagagcattctttggctgtattga 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11842231 gtattgatatcgtcctatagtgatttgtgatttcattctttcttatttttactagaaagaacacaggaaacacaggaagagcattctttggctgtattga 11842132  T
Q  119 tgctcaaactcaatctagtggaccttctctttagacgtgcaccttgtaaccctcttccttattattggtgcggctatgtgaggactcattctggtggctg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||| |||||    
T  11842131 tgctcaaactcaatctagtggaccttctctttagacgtgcaccttgtatccctcatctttattattggtgcggctatgtgaggactcattctggcggctg 11842032  T
Q  219 ttcaagggttaaatcttcagcttctacccacaacctacctgatcaagaaacccaggcaagttttttctgcaaatgttaccaaagtttatggggccgttag 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11842031 ttcaagggttaaatcttcagcttctacccacaacctacctgatcaagaaacccaggcaagttttttctgcaaatgttaccaatgtttatggggccgttag 11841932  T
Q  319 caatgcctttgcttct 334  Q
    |||||| |||| ||||    
T  11841931 caatgcttttgattct 11841916  T

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Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 22 - 329
Target Start/End: Complemental strand, 23618313 - 23618017
Alignment:
Q  22 ttgatatcgtcctatagtgatttctgatttcattctttcttatttttactagaaagaacacaggaaacacaggaagagcattctttggctgtattgatgc 121  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||  | |  |||    || | ||||  |||||||||||||||| || ||| ||||    
T  23618313 ttgatgtcgtcctatagtgatttatgatttcattctttcttatttttgtttgctagag---agcatacac--gaagagcattctttggttgaattcatgc 23618219  T
Q  122 tcaaactcaatctagtggaccttctctttagacgtgcaccttgtaaccctcttccttattattggtgcggctatgtgaggactcattctggtggctgttc 221  Q
    |||||||||||||| ||||||| ||||||||||||   ||  ||   |||  |||||||||| ||| ||||||||||||| ||||  ||         ||    
T  23618218 tcaaactcaatctactggacctgctctttagacgttatccccgtgggcctggtccttattatcggtacggctatgtgagggctcaaact---------tc 23618128  T
Q  222 aagggttaaa---tcttcagcttctacccacaacctacctgatcaagaaacccaggcaagttttttctgcaaatgttaccaaagtttatggggccgttag 318  Q
    |||||||| |   |||| | |||||||||||||||||||| | |||||||| |||||||||||||| ||||||||||||||||||||||| |||| ||||    
T  23618127 aagggttagaccatctttaacttctacccacaacctaccttaccaagaaactcaggcaagttttttttgcaaatgttaccaaagtttatgaggcctttag 23618028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 22 - 329
Target Start/End: Complemental strand, 23649655 - 23649359
Alignment:
Q  22 ttgatatcgtcctatagtgatttctgatttcattctttcttatttttactagaaagaacacaggaaacacaggaagagcattctttggctgtattgatgc 121  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||  | |  |||    || | ||||  |||||||||||||||| || ||| ||||    
T  23649655 ttgatgtcgtcctatagtgatttatgatttcattctttcttatttttgtttgctagag---agcatacac--gaagagcattctttggttgaattcatgc 23649561  T
Q  122 tcaaactcaatctagtggaccttctctttagacgtgcaccttgtaaccctcttccttattattggtgcggctatgtgaggactcattctggtggctgttc 221  Q
    |||||||||||||| ||||||| ||||||||||||   ||  ||   |||  |||||||||| ||| ||||||||||||| ||||  ||         ||    
T  23649560 tcaaactcaatctactggacctgctctttagacgttatccccgtgggcctggtccttattatcggtacggctatgtgagggctcaaact---------tc 23649470  T
Q  222 aagggttaaa---tcttcagcttctacccacaacctacctgatcaagaaacccaggcaagttttttctgcaaatgttaccaaagtttatggggccgttag 318  Q
    |||||||| |   |||| | |||||||||||||||||||| | |||||||| |||||||||||||| ||||||||||||||||||||||| |||| ||||    
T  23649469 aagggttagaccatctttaacttctacccacaacctaccttaccaagaaactcaggcaagttttttttgcaaatgttaccaaagtttatgaggcctttag 23649370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 94 - 329
Target Start/End: Original strand, 23627176 - 23627405
Alignment:
Q  94 gaagagcattctttggctgtattgatgctcaaactcaatctagtggaccttctctttagacgtgcaccttgtaaccctcttccttattattggtgcggct 193  Q
    |||||||||||||||| || ||| |||||||||||||||| | |||| |||||||||||||||    || ||   ||| ||||||||||||||| || ||    
T  23627176 gaagagcattctttggttgaattcatgctcaaactcaatcaactggatcttctctttagacgttatactcgtgggcctgttccttattattggtacgact 23627275  T
Q  194 atgtgaggactcattctggtggctgttcaagggttaaatcttc---agcttctacccacaacctacctgatcaagaaacccaggcaagttttttctgcaa 290  Q
    |||||||| ||||  ||          | ||||||| ||| ||   | |||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  23627276 atgtgagggctcaaactc---------cgagggttagatcatctttaacttctacccacaacctaccttaccaagaaacccaggcaagttttttctgcaa 23627366  T
Q  291 atgttaccaaagtttatggggccgttagcaatgcctttg 329  Q
    |||||||||||||||||||| || |||||||||| ||||    
T  23627367 atgttaccaaagtttatgggacctttagcaatgcttttg 23627405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 22 - 329
Target Start/End: Complemental strand, 23735280 - 23734986
Alignment:
Q  22 ttgatatcgtcctatagtgatttctgatttcattctttcttatttttactagaaagaacacaggaaacacaggaagagcattctttggctgtattgatgc 121  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||  | |  |||    || | ||||  |||||||||||||||| || ||| ||||    
T  23735280 ttgatgtcgtcctatagtgatttatgatttcattctttcttatttttgtttgctagag---agcatacac--gaagagcattctttggttgaattcatgc 23735186  T
Q  122 tcaaactcaatctagtggaccttctctttagacgtgcaccttgtaaccctcttccttattattggtgcggctatgtgaggactcattctggtggctgttc 221  Q
    |||||||||||||| |||||||||||||||||| |   ||  ||   ||| ||||||||||||||| ||||||| ||||| ||||  ||         ||    
T  23735185 tcaaactcaatctactggaccttctctttagacattatccccgtgggcctattccttattattggtacggctatatgagggctcaaact---------tc 23735095  T
Q  222 aagggttaaatcttc---agcttctacccacaacctacctgatcaagaaacccaggcaagttttttctgcaaatgttaccaaagtttatggggccgttag 318  Q
     ||||||| ||| ||   | |||||||||||||||||||| | |||||||| |||||||||||||| |||||||||||||||||||  || |||| ||||    
T  23735094 gagggttagatcatctttaacttctacccacaacctaccttaccaagaaactcaggcaagttttttttgcaaatgttaccaaagtt--tgaggcctttag 23734997  T

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