View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4259_high_17 (Length: 321)
Name: NF4259_high_17
Description: NF4259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4259_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 42036419 - 42036526
Alignment:
| Q |
16 |
ataatgtttttcaattctatgctaacacgattctttattatatgactttaaaaatgtttcctttatattcattttctgagataaaatgggagaggttcta |
115 |
Q |
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| T |
42036419 |
ataatgtttttcaattctatgctaacacgattctttattatatgactttaaaaatgtttcctttatattcattttctgag----aatgggagaggttcta |
42036514 |
T |
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| Q |
116 |
gttttaatccta |
127 |
Q |
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|||||||||||| |
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| T |
42036515 |
gttttaatccta |
42036526 |
T |
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Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 195 - 275
Target Start/End: Original strand, 42036583 - 42036663
Alignment:
| Q |
195 |
acaacattatttgttacatatttgattttattttaaaaaataaccatgaaactagataaaatattatacaattctttctta |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42036583 |
acaacattatttgttacatatttgattttattttaaaaaataaccatgaaactagataaaatattatacaattctttctta |
42036663 |
T |
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