View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4259_high_2 (Length: 703)
Name: NF4259_high_2
Description: NF4259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4259_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 38066558 - 38066272
Alignment:
| Q |
18 |
aagggaacactagacaaaagtctgaattagggaacattgtcatattgacttcccacgttgaaaaaagtactcttttacacactctccccctatagaccgc |
117 |
Q |
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| T |
38066558 |
aagggagcactggacaaaagtctgaattagggaacattgtcatattgacttcccacgttgaaaaa-gtactcttttacacactctccccctatagaccgc |
38066460 |
T |
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| Q |
118 |
acattgaagcgagttgctttaagtgagttcgagccagaaaaattgtttgtaacaaattaacttgagtttcaagttaatcaannnnnnnnngtcaaaataa |
217 |
Q |
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| T |
38066459 |
acattgaagcgagttgttttaagtgagttcgagccagaaaagttgtttgtaacaaattaacttgagtttcaagttaatcaattttcttttgtcaaaataa |
38066360 |
T |
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| Q |
218 |
agttgaccaaatatttattgaactaagttcgactcatttttaacattagtaaaaaagaaaatcttaacatcatatgactgagtccttc |
305 |
Q |
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| T |
38066359 |
agttgaccagatatttattgaactaagttcgactcatttttaacattagtaaaaaagaaaatcttaacatcatatgactgagtccttc |
38066272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 394 - 685
Target Start/End: Complemental strand, 38066179 - 38065905
Alignment:
| Q |
394 |
atatcaacatgcatgtgccctaaatgtataaatttgcatttttcataaatttaaaacatacatctatataggcattcatttttctaaagacacgtgtcaa |
493 |
Q |
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| T |
38066179 |
atatcaacatgcatgtgccctaaatgtacaaatttgcatttttcataaatttaaaacatacatctatataggcattcatttttctaaagacacatgtcaa |
38066080 |
T |
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| Q |
494 |
tttagaaggttgttaaatggggag-nnnnnnnntctttcaccgtaggtggtcttagagttaatgctagcaagaccctaattaaattggtctcctaaaaaa |
592 |
Q |
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| T |
38066079 |
tttagaaggttgttaaatggggagaaaaaaaaatctttcaccgtaggtggtcttagagttaatgctagcaa------attta---tg---------acaa |
38065998 |
T |
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| Q |
593 |
tgttagttctatcaaatttatgatgaaatcatgttttattctagactcggatgatattacgttggctgagctttcggctatctattatggtct |
685 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38065997 |
tgttagttctatcaaatttatgatgaaatcatgttttattctagactcagatgatattatgttggctgagctttcggctatctattatggtct |
38065905 |
T |
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