View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4259_high_23 (Length: 245)
Name: NF4259_high_23
Description: NF4259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4259_high_23 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 43051931 - 43051695
Alignment:
| Q |
18 |
aaaacctgctgatgtagaatcatccgggtgaatttataataatacataggtttctgtaccacatcaataa-aaaatttgtcacgtcaacactttagatcc |
116 |
Q |
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| T |
43051931 |
aaaacctgctgatgtagaatcatccgggtgaatttataataatacataggtttctatgccacatcaataaaaaaaattgtcacgtcaacactttagatcc |
43051832 |
T |
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| Q |
117 |
aaaatacgagtaaaggaccaaataa--------taaaagaagggatcaatttcgtgagcgatggaaaataagaagacgaaaacggtgatcaagccatata |
208 |
Q |
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| T |
43051831 |
aaaatacgagtaaaggaccaaataattagattttaaaagaagggatcaatttcgtgagcgatggaaaataagaagacgaaaacggtgatcaagccatata |
43051732 |
T |
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| Q |
209 |
tgttcaacaactaactattgtcatcctgcatgttatt |
245 |
Q |
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| T |
43051731 |
tgttcaacaactaactattgtcatcctgcatgttatt |
43051695 |
T |
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