View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4259_high_24 (Length: 244)

Name: NF4259_high_24
Description: NF4259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4259_high_24
NF4259_high_24
[»] chr3 (7 HSPs)
chr3 (1-143)||(2834920-2835062)
chr3 (1-56)||(2852780-2852835)
chr3 (65-146)||(2771854-2771935)
chr3 (77-145)||(2794342-2794410)
chr3 (72-125)||(2751902-2751955)
chr3 (69-133)||(2821357-2821421)
chr3 (110-138)||(2834742-2834770)


Alignment Details
Target: chr3 (Bit Score: 119; Significance: 6e-61; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 2835062 - 2834920
Alignment:
Q  1 cattactttcctgctttttcaatttctagagtttaagattggtgggagctttccttcaaaccttgtaataataataatcaaaacgacttcatatgaatga 100  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  2835062 cattactttcctactttttccatttctagagtttaagattggtgggagctttccttcaacccttgtaataataataatcaaaaccacttcatatgaatga 2834963  T
Q  101 atatttttattttgctaaccaagatcgatgctactatcattat 143  Q
    ||||||||||||||||||||| |||||||||||||||| ||||    
T  2834962 atatttttattttgctaaccacgatcgatgctactatcgttat 2834920  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 2852835 - 2852780
Alignment:
Q  1 cattactttcctgctttttcaatttctagagtttaagattggtgggagctttcctt 56  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2852835 cattactttcctactttttcaatttctagagtttaagattggtgggagctttcctt 2852780  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 65 - 146
Target Start/End: Original strand, 2771854 - 2771935
Alignment:
Q  65 gtaataataataatcaaaacgacttcatatgaatgaatatttttattttgctaaccaagatcgatgctactatcattatcta 146  Q
    |||||||||||||||||||| |||||||   ||||||||| |||||||||||||||||| | |||||||||||||| |||||    
T  2771854 gtaataataataatcaaaactacttcattcaaatgaatatgtttattttgctaaccaagcttgatgctactatcataatcta 2771935  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 2794342 - 2794410
Alignment:
Q  77 atcaaaacgacttcatatgaatgaatatttttattttgctaaccaagatcgatgctactatcattatct 145  Q
    |||||||| ||||||| ||||||||||| || | |||||| |||||||| |||||||||||||| ||||    
T  2794342 atcaaaaccacttcatctgaatgaatatgttaactttgcttaccaagattgatgctactatcataatct 2794410  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 2751902 - 2751955
Alignment:
Q  72 taataatcaaaacgacttcatatgaatgaatatttttattttgctaaccaagat 125  Q
    ||||||||||||   | |||| ||||||||||||||||||||||||||||||||    
T  2751902 taataatcaaaatatcctcatttgaatgaatatttttattttgctaaccaagat 2751955  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 2821357 - 2821421
Alignment:
Q  69 taataataatcaaaacgacttcatatgaatgaatatttttattttgctaaccaagatcgatgcta 133  Q
    |||||||||||||||| | ||||| ||||||||| | ||||||  ||||| |||||| |||||||    
T  2821357 taataataatcaaaaccatttcatttgaatgaatttgtttattcggctaatcaagattgatgcta 2821421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 138
Target Start/End: Complemental strand, 2834770 - 2834742
Alignment:
Q  110 ttttgctaaccaagatcgatgctactatc 138  Q
    |||||||||||||||||||||||||||||    
T  2834770 ttttgctaaccaagatcgatgctactatc 2834742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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