View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4259_high_9 (Length: 412)
Name: NF4259_high_9
Description: NF4259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4259_high_9 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 12 - 412
Target Start/End: Complemental strand, 17754522 - 17754122
Alignment:
| Q |
12 |
catagggaagaaaccaacactcatacgaaggcctcacaaacttattcaatagtacagtttaaaaattgtgaatcttaggaatgaaaatacactgttacaa |
111 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17754522 |
catagggaagaaacctacactcatacgaaggcctcacaaacttattcaatagtacagtttaaaaattgtgaatcttaggaatgaaaatacactgttacaa |
17754423 |
T |
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| Q |
112 |
gcatattttgcatggcgtgacattaccttcaactggacttgacgcatgactcatcgtatgtccatttgctaccacttcttccgaaaatggtgatccagag |
211 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17754422 |
gcatattttgcatcgcgtgacattaccttcaactggacttgaggcacgactcatcatatgtccatttgctaccacttcttccgaaaatggtgatccagag |
17754323 |
T |
|
| Q |
212 |
ttattgttgtccccaatatttgaaaaactatctaacaacatgtcatcctgttcaggaacatcgggaatgggagataccggtagataacatagctcttcct |
311 |
Q |
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|||||| |||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17754322 |
ttattgctgtccccaatctttgaagaactatctaacaacctgtcatcctgttcaggaacatcgggaatgggagataccggtagataacatagctcttcct |
17754223 |
T |
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| Q |
312 |
cggacatatcagagtcgctgaaagcaggatccttctcgactgttataatgtcaacgtcctcatcttcattgacatcagatacttttacctgcaaggatat |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17754222 |
cggacatatcagagtcgctgaaagcaggatccttctcgactgttataatgtcaacgtcctcatcttcattgacatcagatacttttacctgcaaggatat |
17754123 |
T |
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| Q |
412 |
g |
412 |
Q |
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| T |
17754122 |
g |
17754122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 12 - 412
Target Start/End: Complemental strand, 17763509 - 17763109
Alignment:
| Q |
12 |
catagggaagaaaccaacactcatacgaaggcctcacaaacttattcaatagtacagtttaaaaattgtgaatcttaggaatgaaaatacactgttacaa |
111 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17763509 |
catagggaagaaacctacactcatacgaaggcctcacaaacttattcaatagtacagtttaaaaattgtgaatcttaggaatgaaaatacactgttacaa |
17763410 |
T |
|
| Q |
112 |
gcatattttgcatggcgtgacattaccttcaactggacttgacgcatgactcatcgtatgtccatttgctaccacttcttccgaaaatggtgatccagag |
211 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17763409 |
gcatattttgcatcgcgtgacattaccttcaactggacttgaggcacgactcatcatatgtccatttgctaccacttcttccgaaaatggtgatccagag |
17763310 |
T |
|
| Q |
212 |
ttattgttgtccccaatatttgaaaaactatctaacaacatgtcatcctgttcaggaacatcgggaatgggagataccggtagataacatagctcttcct |
311 |
Q |
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|||||| |||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17763309 |
ttattgctgtccccaatctttgaagaactatctaacaacctgtcatcctgttcaggaacatcgggaatgggagataccggtagataacatagctcttcct |
17763210 |
T |
|
| Q |
312 |
cggacatatcagagtcgctgaaagcaggatccttctcgactgttataatgtcaacgtcctcatcttcattgacatcagatacttttacctgcaaggatat |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17763209 |
cggacatatcagagtcgctgaaagcaggatccttctcgactgttataatgtcaacgtcctcatcttcattgacatcagatacttttacctgcaaggatat |
17763110 |
T |
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| Q |
412 |
g |
412 |
Q |
| |
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| |
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| T |
17763109 |
g |
17763109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 10 - 412
Target Start/End: Complemental strand, 17740538 - 17740138
Alignment:
| Q |
10 |
agcatagggaagaaaccaacactcatacgaaggcctcacaaacttattcaatagtacagtttaaaaattgtgaatcttaggaatgaaaatacactgttac |
109 |
Q |
| |
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||||| ||||||||||| | ||||||| ||||||| ||||| | ||||| ||| || || ||| |||| || ||||| |||||||||||| | ||||| |
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| T |
17740538 |
agcatggggaagaaacctaaactcata--aaggcctgacaaagtgtttcaacagttcaattaaaacattgggattcttaagaatgaaaatactccgttac |
17740441 |
T |
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| Q |
110 |
aagcatattttgcatggcgtgacattaccttcaactggacttgacgcatgactcatcgtatgtccatttgctaccacttcttccgaaaatggtgatccag |
209 |
Q |
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||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||| | ||||||||||||||||||||||| |||||||||||||||| |
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| T |
17740440 |
aagcatattttgcatggtgtgacattaccttcaagtggacttgaggcatgactcatcatgtgtccatttgctaccacttcttctgaaaatggtgatccag |
17740341 |
T |
|
| Q |
210 |
agttattgttgtccccaatatttgaaaaactatctaacaacatgtcatcctgttcaggaacatcgggaatgggagataccggtagataacatagctcttc |
309 |
Q |
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|||||||| |||||||||| |||||| |||||||||| | | |||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
17740340 |
agttattgctgtccccaatctttgaagaactatctaaaagcctgtcttcctgttcaggaacatcgggaatgggagatactggtagataacgtagctcttc |
17740241 |
T |
|
| Q |
310 |
ctcggacatatcagagtcgctgaaagcaggatccttctcgactgttataatgtcaacgtcctcatcttcattgacatcagatacttttacctgcaaggat |
409 |
Q |
| |
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||| ||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
17740240 |
ctcagacatatcagagtcgctgaaattaggatccttctcgactgtcacaatgtcaacgtcctcatcttcattgacatcagatccttttacctgcaaggat |
17740141 |
T |
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| Q |
410 |
atg |
412 |
Q |
| |
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||| |
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| T |
17740140 |
atg |
17740138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 39 - 412
Target Start/End: Complemental strand, 15736446 - 15736073
Alignment:
| Q |
39 |
aaggcctcacaaacttattcaatagtacagtttaaaaattgtgaatcttaggaatgaaaatacactgttacaagcatattttgcatggcgtgacattacc |
138 |
Q |
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||||||||||||| | ||||| ||| || || ||||||| || ||||| ||||||||||| |||||||||||||||||| ||||| |||||||||| |
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| T |
15736446 |
aaggcctcacaaagtggttcaacagttcaattgaaaaattcggattcttaagaatgaaaataatatgttacaagcatattttgaatggcatgacattacc |
15736347 |
T |
|
| Q |
139 |
ttcaactggacttgacgcatgactcatcgtatgtccatttgctaccacttcttccgaaaatggtgatccagagttattgttgtccccaatatttgaaaaa |
238 |
Q |
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||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||| |||||| || |
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| T |
15736346 |
ttcaactggacttgaggcatgactcatcatatgtccatttgctaccacttcttcggaaaatggtgatccggagttattgctgtccccaatctttgaagaa |
15736247 |
T |
|
| Q |
239 |
ctatctaacaacatgtcatcctgttcaggaacatcgggaatgggagataccggtagataacatagctcttcctcggacatatcagagtcgctgaaagcag |
338 |
Q |
| |
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|| ||||| ||| |||| |||||||||||||||||| | ||||||| | || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15736246 |
ctttctaaaaacctgtcttcctgttcaggaacatcgcggcagggagatgctggcagataacatagctcttcctcggacatatcagagtcgctgaaagcag |
15736147 |
T |
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| Q |
339 |
gatccttctcgactgttataatgtcaacgtcctcatcttcattgacatcagatacttttacctgcaaggatatg |
412 |
Q |
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|||||||||| ||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
15736146 |
gatccttctctactgtctcaatgtcaacgtcctcgtcttcattgacatcagatccttttacctgcaaggatatg |
15736073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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