View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4259_low_1 (Length: 726)
Name: NF4259_low_1
Description: NF4259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4259_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 14 - 513
Target Start/End: Complemental strand, 2250919 - 2250421
Alignment:
| Q |
14 |
agaaaaaacaacagatagaaaaaataagggagatagacaaataaatctgatattaatgcaagttcttctttgcatatacttattgcatactaatttactt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
2250919 |
agaaaaaacaacagatagaaaaaataagggagatagacaaataagtctgatattaatgtaagttcttctttgcatatacttcttgcatactaatttactt |
2250820 |
T |
|
| Q |
114 |
aataaatcttgaattattttttggcaccatcagccttttgctaattcctggattcacgtttctttgcatcaaaatcatcctttttgctaattctaaaccg |
213 |
Q |
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||||||||||||||||||||| || ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2250819 |
aataaatcttgaattattttt-ggtaccatcaaccttttgctaattccgggattcacgtttctttgcatcaaaatcatcctttttgctaattctaaaccg |
2250721 |
T |
|
| Q |
214 |
ttcatttcggtgtttgttctaaattcttgatgaatgattgcagattagaacgtgaacttaaaagatgtaggatcacaatatggattagccacaagcgcaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2250720 |
ttcatttcggtgtttgttctaaattcttgatgaatgattgcagattagaacgtgaaattaaaagatgtaggatcacaatatggattagccacaagcgcaa |
2250621 |
T |
|
| Q |
314 |
catcattagacatagaggagggcgctgtcaagaagcacggtaacgacaacgacgttctccatggagtattcgacaacgatgtagatccttcctcactcgc |
413 |
Q |
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||||| ||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| | |
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| T |
2250620 |
catcaatagacatagaggagggcgccgtcaagaagcatggtaacgacaacgacattctccatggagtattcgacaacgatgtaggtccttcctcactcac |
2250521 |
T |
|
| Q |
414 |
ttccattttaccaattctcattcacaaaataaaaagaggaagaatatggaatctttgtgatcattgcagccacgtttgttcaattctattgcttttgccc |
513 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2250520 |
ttccattttaccgattctcattcacaaaataaaaagaggaagaacatggaatctttgtgatcattgcagccacgtttgttcaattatattgcttttgccc |
2250421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 579 - 711
Target Start/End: Complemental strand, 2250355 - 2250223
Alignment:
| Q |
579 |
gttacagaggagaaagggaaacatccagtctataactatctataaaggcaataccaaagtttggtatggccnnnnnnngccaatttcgccacttaaataa |
678 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||| |
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| T |
2250355 |
gttacagaggagaaagggaaacatccaatctataactatctataaaggcaataccaaagtttggtatggactttttttgccaatttcgccccttaaataa |
2250256 |
T |
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| Q |
679 |
gactataatctactttacacccttcatggtaag |
711 |
Q |
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| T |
2250255 |
gactataatctactttacacccttcatggtaag |
2250223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 260
Target Start/End: Complemental strand, 7826210 - 7826137
Alignment:
| Q |
186 |
aatcatcctttttgctaattctaaaccgttcatttcggtgtttgttctaaattcttgatgaatgattgcagatta |
260 |
Q |
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|||||||||||| || ||||||||||||||| || |||||||| || |||||||||||||||||||||||||| |
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| T |
7826210 |
aatcatccttttc-ctgattctaaaccgttcacttaggtgtttgatccgaattcttgatgaatgattgcagatta |
7826137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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