View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4259_low_13 (Length: 357)
Name: NF4259_low_13
Description: NF4259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4259_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 5 - 341
Target Start/End: Original strand, 12698936 - 12699270
Alignment:
| Q |
5 |
ggtagattatactaagtagtggaactagctaatgatgtggcaaccctaccagaatgggagctacctcatttgtttgtcgtctatagaactcgcccttcga |
104 |
Q |
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| T |
12698936 |
ggtacattataataagtagtggaactagctaatgatgtggcaaccctaccagaatgtgagctacctcatttgtttgtcgtctatagaactcgcccttgga |
12699035 |
T |
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| Q |
105 |
gtttgtaaattgtgaagtgaacaaatgtcgacacacggatctaatttgactatcttcgtaacatcaacctgagcttgatggaaagcatctatagtaactt |
204 |
Q |
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| T |
12699036 |
gtttgtaaattgtgaagtgaacaaatgtcgacacacggatctaatttgactatctccgtaacatcaacctg--cctgatggaaagcatctatagtaactt |
12699133 |
T |
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| Q |
205 |
tggaatcggatgtgaaatccacgttgttgaaggacatgtcgctcagccattgcattgcataatataacgtcaacgcttcccccatgggtacatgacattt |
304 |
Q |
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| T |
12699134 |
tggaatcagatgtgaaatccacgttgttgaaggacatgtcgctcagccattgcattgcataatataacgtcaacgcttcccccatgggtacatgacattt |
12699233 |
T |
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| Q |
305 |
cagagatatgggaatagtttttgccaacacaaaagtt |
341 |
Q |
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| T |
12699234 |
cagagatatgggaatagtttttgccaacacaaaagtt |
12699270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 289
Target Start/End: Original strand, 30449524 - 30449751
Alignment:
| Q |
62 |
gagctacctcatttgtttgtcgtctatagaactcgcccttcgagtttgtaaattgtgaagtgaacaaatgtcgacacacggatctaatttgacta-tctt |
160 |
Q |
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| T |
30449524 |
gagctacctcatttgcttgttgcatattaaactcaaccttcgagtttgtgaagtgtgatgtaaacaaacgtcgacacacagagattatgtgaccagtctc |
30449623 |
T |
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| Q |
161 |
cgtaacatcaacctgagcttgatggaaagcatctatagtaactttggaatcggatgtgaaatccacgttgttgaaggacatgtcgctcagccattgcatt |
260 |
Q |
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| T |
30449624 |
cgtaac-tcaacccgttcctgattgaaagcatctataataactttggaattagatgtgaagtccacattatcgaaggacatgtcacttaggcattccaaa |
30449722 |
T |
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| Q |
261 |
gcataatataacgtcaacgcttcccccat |
289 |
Q |
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| T |
30449723 |
gcatagtataacaccaaggcatcccccat |
30449751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 8274774 - 8274741
Alignment:
| Q |
17 |
taagtagtggaactagctaatgatgtggcaaccc |
50 |
Q |
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| T |
8274774 |
taagtagtggaactagctaataatgtggcaaccc |
8274741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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