View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4259_low_15 (Length: 339)

Name: NF4259_low_15
Description: NF4259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4259_low_15
NF4259_low_15
[»] chr3 (3 HSPs)
chr3 (19-334)||(53287582-53287897)
chr3 (249-312)||(52545684-52545746)
chr3 (94-201)||(52806045-52806152)
[»] chr6 (1 HSPs)
chr6 (19-334)||(11841916-11842231)
[»] chr1 (4 HSPs)
chr1 (22-329)||(23618017-23618313)
chr1 (22-329)||(23649359-23649655)
chr1 (94-329)||(23627176-23627405)
chr1 (22-329)||(23734986-23735280)


Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 19 - 334
Target Start/End: Original strand, 53287582 - 53287897
Alignment:
Q  19 gtattgatatcgtcctatagtgatttctgatttcattctttcttatttttactagaaagaacacaggaaacacaggaagagcattctttggctgtattga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53287582 gtattgatatcgtcctatagtgatttctgatttcattctttcttatttttactagaaagaacacaggaaacacaggaagagcattctttggctgtattga 53287681  T
Q  119 tgctcaaactcaatctagtggaccttctctttagacgtgcaccttgtaaccctcttccttattattggtgcggctatgtgaggactcattctggtggctg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  53287682 tgctcaaactcaatctagtggaccttctctttagacgtgcaccttgtaaccctcttccttattattggtgcggctatgtgaggactcagtctggtggctg 53287781  T
Q  219 ttcaagggttaaatcttcagcttctacccacaacctacctgatcaagaaacccaggcaagttttttctgcaaatgttaccaaagtttatggggccgttag 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53287782 ttcaagggttaaatcttcagcttctacccacaacctacctgatcaagaaacccaggcaagttttttctgcaaatgttaccaaagtttatggggccgttag 53287881  T
Q  319 caatgcctttgcttct 334  Q
    |||||| |||| ||||    
T  53287882 caatgcttttgattct 53287897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 312
Target Start/End: Original strand, 52545684 - 52545746
Alignment:
Q  249 caacctacctgatcaagaaacccaggcaagttttttctgcaaatgttaccaaagtttatggggc 312  Q
    |||||||| |||| |||||||||| ||||||||||| |||| |||||| |||||||||||||||    
T  52545684 caacctacgtgattaagaaacccaagcaagtttttt-tgcatatgttaacaaagtttatggggc 52545746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 201
Target Start/End: Complemental strand, 52806152 - 52806045
Alignment:
Q  94 gaagagcattctttggctgtattgatgctcaaactcaatctagtggaccttctctttagacgtgcaccttgtaaccctcttccttattattggtgcggct 193  Q
    |||||| ||||||| | || ||| ||||||||||||||||||||||   ||||||||||||     ||  ||   ||||||||||||||||||| |||||    
T  52806152 gaagaggattcttttgttggattcatgctcaaactcaatctagtggctgttctctttagactcaggccccgtgggcctcttccttattattggtccggct 52806053  T
Q  194 atgtgagg 201  Q
    ||||||||    
T  52806052 atgtgagg 52806045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 334
Target Start/End: Complemental strand, 11842231 - 11841916
Alignment:
Q  19 gtattgatatcgtcctatagtgatttctgatttcattctttcttatttttactagaaagaacacaggaaacacaggaagagcattctttggctgtattga 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11842231 gtattgatatcgtcctatagtgatttgtgatttcattctttcttatttttactagaaagaacacaggaaacacaggaagagcattctttggctgtattga 11842132  T
Q  119 tgctcaaactcaatctagtggaccttctctttagacgtgcaccttgtaaccctcttccttattattggtgcggctatgtgaggactcattctggtggctg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||| |||||    
T  11842131 tgctcaaactcaatctagtggaccttctctttagacgtgcaccttgtatccctcatctttattattggtgcggctatgtgaggactcattctggcggctg 11842032  T
Q  219 ttcaagggttaaatcttcagcttctacccacaacctacctgatcaagaaacccaggcaagttttttctgcaaatgttaccaaagtttatggggccgttag 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11842031 ttcaagggttaaatcttcagcttctacccacaacctacctgatcaagaaacccaggcaagttttttctgcaaatgttaccaatgtttatggggccgttag 11841932  T
Q  319 caatgcctttgcttct 334  Q
    |||||| |||| ||||    
T  11841931 caatgcttttgattct 11841916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 22 - 329
Target Start/End: Complemental strand, 23618313 - 23618017
Alignment:
Q  22 ttgatatcgtcctatagtgatttctgatttcattctttcttatttttactagaaagaacacaggaaacacaggaagagcattctttggctgtattgatgc 121  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||  | |  |||    || | ||||  |||||||||||||||| || ||| ||||    
T  23618313 ttgatgtcgtcctatagtgatttatgatttcattctttcttatttttgtttgctagag---agcatacac--gaagagcattctttggttgaattcatgc 23618219  T
Q  122 tcaaactcaatctagtggaccttctctttagacgtgcaccttgtaaccctcttccttattattggtgcggctatgtgaggactcattctggtggctgttc 221  Q
    |||||||||||||| ||||||| ||||||||||||   ||  ||   |||  |||||||||| ||| ||||||||||||| ||||  ||         ||    
T  23618218 tcaaactcaatctactggacctgctctttagacgttatccccgtgggcctggtccttattatcggtacggctatgtgagggctcaaact---------tc 23618128  T
Q  222 aagggttaaa---tcttcagcttctacccacaacctacctgatcaagaaacccaggcaagttttttctgcaaatgttaccaaagtttatggggccgttag 318  Q
    |||||||| |   |||| | |||||||||||||||||||| | |||||||| |||||||||||||| ||||||||||||||||||||||| |||| ||||    
T  23618127 aagggttagaccatctttaacttctacccacaacctaccttaccaagaaactcaggcaagttttttttgcaaatgttaccaaagtttatgaggcctttag 23618028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 22 - 329
Target Start/End: Complemental strand, 23649655 - 23649359
Alignment:
Q  22 ttgatatcgtcctatagtgatttctgatttcattctttcttatttttactagaaagaacacaggaaacacaggaagagcattctttggctgtattgatgc 121  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||  | |  |||    || | ||||  |||||||||||||||| || ||| ||||    
T  23649655 ttgatgtcgtcctatagtgatttatgatttcattctttcttatttttgtttgctagag---agcatacac--gaagagcattctttggttgaattcatgc 23649561  T
Q  122 tcaaactcaatctagtggaccttctctttagacgtgcaccttgtaaccctcttccttattattggtgcggctatgtgaggactcattctggtggctgttc 221  Q
    |||||||||||||| ||||||| ||||||||||||   ||  ||   |||  |||||||||| ||| ||||||||||||| ||||  ||         ||    
T  23649560 tcaaactcaatctactggacctgctctttagacgttatccccgtgggcctggtccttattatcggtacggctatgtgagggctcaaact---------tc 23649470  T
Q  222 aagggttaaa---tcttcagcttctacccacaacctacctgatcaagaaacccaggcaagttttttctgcaaatgttaccaaagtttatggggccgttag 318  Q
    |||||||| |   |||| | |||||||||||||||||||| | |||||||| |||||||||||||| ||||||||||||||||||||||| |||| ||||    
T  23649469 aagggttagaccatctttaacttctacccacaacctaccttaccaagaaactcaggcaagttttttttgcaaatgttaccaaagtttatgaggcctttag 23649370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 94 - 329
Target Start/End: Original strand, 23627176 - 23627405
Alignment:
Q  94 gaagagcattctttggctgtattgatgctcaaactcaatctagtggaccttctctttagacgtgcaccttgtaaccctcttccttattattggtgcggct 193  Q
    |||||||||||||||| || ||| |||||||||||||||| | |||| |||||||||||||||    || ||   ||| ||||||||||||||| || ||    
T  23627176 gaagagcattctttggttgaattcatgctcaaactcaatcaactggatcttctctttagacgttatactcgtgggcctgttccttattattggtacgact 23627275  T
Q  194 atgtgaggactcattctggtggctgttcaagggttaaatcttc---agcttctacccacaacctacctgatcaagaaacccaggcaagttttttctgcaa 290  Q
    |||||||| ||||  ||          | ||||||| ||| ||   | |||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  23627276 atgtgagggctcaaactc---------cgagggttagatcatctttaacttctacccacaacctaccttaccaagaaacccaggcaagttttttctgcaa 23627366  T
Q  291 atgttaccaaagtttatggggccgttagcaatgcctttg 329  Q
    |||||||||||||||||||| || |||||||||| ||||    
T  23627367 atgttaccaaagtttatgggacctttagcaatgcttttg 23627405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 22 - 329
Target Start/End: Complemental strand, 23735280 - 23734986
Alignment:
Q  22 ttgatatcgtcctatagtgatttctgatttcattctttcttatttttactagaaagaacacaggaaacacaggaagagcattctttggctgtattgatgc 121  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||  | |  |||    || | ||||  |||||||||||||||| || ||| ||||    
T  23735280 ttgatgtcgtcctatagtgatttatgatttcattctttcttatttttgtttgctagag---agcatacac--gaagagcattctttggttgaattcatgc 23735186  T
Q  122 tcaaactcaatctagtggaccttctctttagacgtgcaccttgtaaccctcttccttattattggtgcggctatgtgaggactcattctggtggctgttc 221  Q
    |||||||||||||| |||||||||||||||||| |   ||  ||   ||| ||||||||||||||| ||||||| ||||| ||||  ||         ||    
T  23735185 tcaaactcaatctactggaccttctctttagacattatccccgtgggcctattccttattattggtacggctatatgagggctcaaact---------tc 23735095  T
Q  222 aagggttaaatcttc---agcttctacccacaacctacctgatcaagaaacccaggcaagttttttctgcaaatgttaccaaagtttatggggccgttag 318  Q
     ||||||| ||| ||   | |||||||||||||||||||| | |||||||| |||||||||||||| |||||||||||||||||||  || |||| ||||    
T  23735094 gagggttagatcatctttaacttctacccacaacctaccttaccaagaaactcaggcaagttttttttgcaaatgttaccaaagtt--tgaggcctttag 23734997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University