View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4259_low_16 (Length: 332)
Name: NF4259_low_16
Description: NF4259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4259_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 17 - 310
Target Start/End: Original strand, 15052933 - 15053228
Alignment:
| Q |
17 |
atgaacaaaaagaagcgccaaatgagaggcaacataagtgtattttctgcaatttcggaaataattcatttctttaaatttataagttta--gttgataa |
114 |
Q |
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| T |
15052933 |
atgaacaaaaagaagcgccaaatgagaggcaacataagtgtattttctacaatttctgaaacaatttatttctttaaatttataagtttatagttgataa |
15053032 |
T |
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| Q |
115 |
gtcaagcttctccttgatgcatttcttcttactctattaattaattcaacaaaaataaaagaattaaatgccagcaaattcattcatttgaaccgacaca |
214 |
Q |
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| T |
15053033 |
gtcaagcttctccttgatgcatttcttcttactctattaattaattcatcaaaaataaaagagttaaatgccagcaaattcattcatttgaaccgacaca |
15053132 |
T |
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| Q |
215 |
acacaccactcactaacnnnnnnnncacccgttccacttttattcatcatttaggtttcaagaatttgaacttaaga----agagagaaatttggtgtgt |
310 |
Q |
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| T |
15053133 |
acacac----cactaacttttttttcacccgttccacttttattcattatttaggtttaaagaatttgaacataagaggccagaaagaaatttggtgtgt |
15053228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 291
Target Start/End: Original strand, 15050768 - 15050904
Alignment:
| Q |
158 |
attcaacaaaaataaaagaattaaatgccagcaaattcattcatttgaaccgacacaacacaccactcac---taacnnnnnnnncacccgttccacttt |
254 |
Q |
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| T |
15050768 |
attcatcaaaaataaaagaattaaaagccagaaaactcattcatttaaaccgacacaacacaccactaaccttttttttttgttttacccgttccacttt |
15050867 |
T |
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| Q |
255 |
tattcatcatttaggtttcaagaatttgaacttaaga |
291 |
Q |
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| T |
15050868 |
tattcatcatttaggtttcaagaatttgaacataaga |
15050904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 291
Target Start/End: Complemental strand, 15103656 - 15103520
Alignment:
| Q |
158 |
attcaacaaaaataaaagaattaaatgccagcaaattcattcatttgaaccgacacaacacaccactcac---taacnnnnnnnncacccgttccacttt |
254 |
Q |
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||||| ||||||||||||||||||| ||||| ||| |||||||||| |||||||||||||||||||| || | |||||||||||||| |
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| T |
15103656 |
attcatcaaaaataaaagaattaaaagccagaaaactcattcatttaaaccgacacaacacaccactaaccttttttttttgttttacccgttccacttt |
15103557 |
T |
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| Q |
255 |
tattcatcatttaggtttcaagaatttgaacttaaga |
291 |
Q |
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| T |
15103556 |
tattcatcatttaggtttcaagaatttgaacataaga |
15103520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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