View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4259_low_17 (Length: 322)
Name: NF4259_low_17
Description: NF4259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4259_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 21 - 195
Target Start/End: Complemental strand, 40071424 - 40071244
Alignment:
| Q |
21 |
gagatgaatgagagatcgaatatgattttcatcgagggagtggatattgttctgtacccattttccaagaaccaaatcgagttcgagaaaccctcgttgc |
120 |
Q |
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| T |
40071424 |
gagatgaatgagagatcgaatatgattttcatcgagggagtggatattgttctgtacccattttccaagaaccagatcgagttcgagaaaccctcgttgc |
40071325 |
T |
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| Q |
121 |
ttgcttctatacaataacctatcagtagt------agtattaacacaagagaggtttatttatttatcatcataacaaaaa |
195 |
Q |
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| T |
40071324 |
ttgcttctatacaataacctatcagtagtagtagtagtagtaacacaagagaggtttatttatttatcatcataacaaaaa |
40071244 |
T |
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Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 61 - 142
Target Start/End: Complemental strand, 44968993 - 44968912
Alignment:
| Q |
61 |
tggatattgttctgtacccattttccaagaaccaaatcgagttcgagaaaccctcgttgcttgcttctatacaataacctat |
142 |
Q |
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| T |
44968993 |
tggatattatcctctacccatttgccaagaaccaagtccagttccagaaacccgcgttgtttgcttctatataataacctat |
44968912 |
T |
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