View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4259_low_19 (Length: 296)
Name: NF4259_low_19
Description: NF4259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4259_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 49134402 - 49134690
Alignment:
| Q |
1 |
agtgttgatgtaagaaatgctttaattaatactagtttacatattgcagatctttcctatacatgtaaagggaactgctgggagtttggtagttttgata |
100 |
Q |
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| T |
49134402 |
agtgttgatgtaagaaatgctttaattaatactagttttcatattgcagatctttcctatacatgtaaagggaactgctgggagtttggtagttttgata |
49134501 |
T |
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| Q |
101 |
aattggctaggagcttgggttgtttcatatactttcaactttcttatgagctggagttctcctggtaagcacaatacgctaccacaattagttagtaaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
49134502 |
aattggctaggagcttgggttgtttcatatactttcaactttcttatgagctggagttctcctggtaagcacaatacactaccacaattagttagtaaac |
49134601 |
T |
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| Q |
201 |
ttaagttcttcatcttggtaacatatatcttctatatttttgagcaggtaaattatttttatatgctggatggtcccttttaactattc |
289 |
Q |
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| T |
49134602 |
ttaagttcttcatcttggtaacatatatcttctatatttttgagcaggtacattgtttttatatgctggatgttcccttttaactattc |
49134690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 42 - 173
Target Start/End: Original strand, 6928168 - 6928299
Alignment:
| Q |
42 |
tattgcagatctttcctatacatgtaaagggaactgctgggagtttggtagttttgataaattggctaggagcttgggttgtttcatatactttcaactt |
141 |
Q |
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|||||||| | ||||||||| |||| || ||||||||||| ||||||||||||||| || ||| ||||||||||| | ||||||||||||||||| || |
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| T |
6928168 |
tattgcaggtgtttcctataaatgtgaaaggaactgctggaagtttggtagttttggtagcgtggttaggagcttggatagtttcatatactttcaattt |
6928267 |
T |
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| Q |
142 |
tcttatgagctggagttctcctggtaagcaca |
173 |
Q |
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| T |
6928268 |
tcttatgagttggagttctcctggtaagcaca |
6928299 |
T |
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