View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4259_low_20 (Length: 292)
Name: NF4259_low_20
Description: NF4259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4259_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 45976733 - 45976449
Alignment:
| Q |
1 |
aaggtgactgtaattccttaaaatgagaaatttgaaacggcgaaggaatagaagaaacatatgctccattaatggaggaatctgggccatggacaattcc |
100 |
Q |
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| T |
45976733 |
aaggtgactgtaattccttaaaatgagaaatttgaaacggcgaaggaatagaagaaacatatgctccattaatggaggaatctgggccatggacaattcc |
45976634 |
T |
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| Q |
101 |
tggttccccgacaaggtcaactacatattccctgtttaataacaaaccataacacgaacaatggaaaatatgaggtgaataaaaaacttatgcacaagaa |
200 |
Q |
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| T |
45976633 |
tggttccccgacaaggtcaactacatattccctgttaaataacaaaccataacacgaacaatggaaaatatgaggtgaataaaaaacttatgcacaagaa |
45976534 |
T |
|
| Q |
201 |
tttatcagtcgcatctataacaaaattttactaaccttgagatctgtttgtcatctttaatcttgactaagcaagaggatctgtg |
285 |
Q |
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| T |
45976533 |
tttatcagtcgcatctataacaaaattttactaaccttgagatctgtttgtcatctttaatcttgactaagcaagaggatctgtg |
45976449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 134
Target Start/End: Original strand, 28051650 - 28051763
Alignment:
| Q |
21 |
aaatgagaaatttgaaacggcgaaggaatagaagaaacatatgctccattaatggaggaatctgggccatggacaattcctggttccccgacaaggtcaa |
120 |
Q |
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||||||||||||||||| || ||||| | ||||| ||||||||||||||||| ||||||||||| || | | |||| |||||||| |||||||| | |
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| T |
28051650 |
aaatgagaaatttgaaatggagaaggtgttgaagacacatatgctccattaattgaggaatctggcccggtaatatttcccggttccccaacaaggtcca |
28051749 |
T |
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| Q |
121 |
ctacatattccctg |
134 |
Q |
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| T |
28051750 |
caacatactccctg |
28051763 |
T |
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