View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4259_low_22 (Length: 276)

Name: NF4259_low_22
Description: NF4259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4259_low_22
NF4259_low_22
[»] chr7 (25 HSPs)
chr7 (16-274)||(3799442-3799703)
chr7 (64-266)||(28105789-28106005)
chr7 (17-123)||(36438181-36438292)
chr7 (30-124)||(773712-773810)
chr7 (16-123)||(28589975-28590085)
chr7 (17-123)||(26633486-26633597)
chr7 (16-123)||(30739246-30739359)
chr7 (214-266)||(44002594-44002645)
chr7 (16-123)||(33910188-33910300)
chr7 (59-105)||(40841092-40841138)
chr7 (19-123)||(18015409-18015517)
chr7 (19-123)||(41852131-41852238)
chr7 (24-123)||(42312139-42312244)
chr7 (59-197)||(44002681-44002827)
chr7 (19-123)||(40737831-40737939)
chr7 (16-105)||(42160971-42161062)
chr7 (45-123)||(1366163-1366243)
chr7 (16-105)||(12251136-12251228)
chr7 (45-123)||(25610220-25610300)
chr7 (31-123)||(44875989-44876085)
chr7 (30-97)||(21145492-21145562)
chr7 (19-123)||(29730917-29731021)
chr7 (16-105)||(46221551-46221643)
chr7 (36-123)||(6379913-6380004)
chr7 (45-98)||(40001566-40001621)
[»] chr1 (23 HSPs)
chr1 (30-266)||(50371271-50371527)
chr1 (16-123)||(9777536-9777649)
chr1 (59-194)||(39080377-39080515)
chr1 (17-123)||(26486205-26486314)
chr1 (16-105)||(28885520-28885611)
chr1 (16-113)||(15441412-15441512)
chr1 (19-105)||(51109950-51110038)
chr1 (16-105)||(50552619-50552710)
chr1 (19-123)||(52240365-52240473)
chr1 (16-123)||(25930727-25930838)
chr1 (16-105)||(27703382-27703471)
chr1 (54-105)||(1269717-1269768)
chr1 (16-77)||(6333396-6333459)
chr1 (16-105)||(30899782-30899875)
chr1 (16-123)||(131-245)
chr1 (35-119)||(5560625-5560713)
chr1 (16-121)||(20470736-20470844)
chr1 (30-123)||(30004736-30004834)
chr1 (17-105)||(44836573-44836666)
chr1 (16-88)||(6150846-6150920)
chr1 (16-123)||(20905114-20905226)
chr1 (16-105)||(14084548-14084640)
chr1 (16-105)||(18127786-18127877)
[»] chr6 (15 HSPs)
chr6 (25-123)||(11088701-11088805)
chr6 (59-123)||(350587-350652)
chr6 (16-123)||(57812-57918)
chr6 (17-123)||(6294377-6294490)
chr6 (45-124)||(1092870-1092951)
chr6 (16-105)||(2618479-2618569)
chr6 (45-123)||(29308297-29308377)
chr6 (45-123)||(30915191-30915271)
chr6 (19-105)||(6360886-6360974)
chr6 (16-121)||(31258404-31258512)
chr6 (16-105)||(3514699-3514790)
chr6 (17-123)||(3748398-3748509)
chr6 (16-80)||(6754330-6754395)
chr6 (59-123)||(1690547-1690611)
chr6 (30-88)||(12614584-12614644)
[»] chr5 (18 HSPs)
chr5 (62-197)||(17463018-17463156)
chr5 (16-105)||(12661433-12661523)
chr5 (59-185)||(4177370-4177499)
chr5 (16-121)||(19099145-19099254)
chr5 (19-123)||(23069350-23069458)
chr5 (31-123)||(27351487-27351583)
chr5 (16-123)||(26312112-26312222)
chr5 (16-105)||(26377623-26377713)
chr5 (45-123)||(33281829-33281908)
chr5 (17-123)||(17325968-17326079)
chr5 (16-105)||(37046905-37046996)
chr5 (45-123)||(43511772-43511852)
chr5 (17-123)||(18873583-18873694)
chr5 (59-104)||(931539-931584)
chr5 (45-123)||(3349559-3349639)
chr5 (59-155)||(13288613-13288712)
chr5 (45-123)||(42291709-42291791)
chr5 (210-266)||(13288780-13288835)
[»] chr2 (26 HSPs)
chr2 (16-123)||(1226096-1226209)
chr2 (59-197)||(26261444-26261586)
chr2 (16-105)||(7993757-7993847)
chr2 (45-123)||(36059735-36059815)
chr2 (12-105)||(6530779-6530874)
chr2 (19-105)||(13020550-13020637)
chr2 (16-105)||(9029717-9029811)
chr2 (45-123)||(17117475-17117555)
chr2 (59-146)||(4264680-4264770)
chr2 (16-113)||(31273006-31273107)
chr2 (16-105)||(45619100-45619191)
chr2 (17-123)||(1419032-1419143)
chr2 (45-197)||(24233575-24233731)
chr2 (19-104)||(12269551-12269639)
chr2 (16-105)||(36481518-36481610)
chr2 (16-123)||(4856117-4856228)
chr2 (19-105)||(18676159-18676247)
chr2 (16-123)||(26151576-26151687)
chr2 (214-266)||(26261622-26261673)
chr2 (25-123)||(13997444-13997547)
chr2 (16-81)||(27302409-27302477)
chr2 (17-123)||(39081520-39081630)
chr2 (19-123)||(2063932-2064040)
chr2 (16-105)||(13001760-13001854)
chr2 (16-88)||(41096402-41096477)
chr2 (19-105)||(42759605-42759693)
[»] chr8 (21 HSPs)
chr8 (59-197)||(12268677-12268818)
chr8 (59-123)||(33452929-33452993)
chr8 (17-123)||(42076232-42076343)
chr8 (14-123)||(3471722-3471834)
chr8 (210-266)||(12268594-12268649)
chr8 (16-111)||(32098019-32098119)
chr8 (45-123)||(12531713-12531793)
chr8 (19-105)||(1004184-1004271)
chr8 (16-105)||(7858209-7858299)
chr8 (17-102)||(3628598-3628688)
chr8 (45-107)||(34523799-34523863)
chr8 (16-123)||(43926154-43926263)
chr8 (30-123)||(42951623-42951721)
chr8 (16-105)||(3445659-3445750)
chr8 (59-123)||(5869150-5869212)
chr8 (43-85)||(23567143-23567186)
chr8 (17-105)||(13585424-13585514)
chr8 (16-86)||(29372479-29372554)
chr8 (61-123)||(35875071-35875133)
chr8 (16-105)||(18420457-18420549)
chr8 (31-105)||(43967919-43967995)
[»] chr3 (16 HSPs)
chr3 (17-123)||(7767189-7767300)
chr3 (16-105)||(51939404-51939495)
chr3 (17-123)||(46904865-46904976)
chr3 (60-121)||(21596505-21596566)
chr3 (25-88)||(15998415-15998481)
chr3 (16-105)||(8364297-8364388)
chr3 (16-105)||(23067574-23067664)
chr3 (16-88)||(27729635-27729709)
chr3 (16-88)||(46791563-46791637)
chr3 (62-113)||(1649681-1649732)
chr3 (19-123)||(27110700-27110809)
chr3 (16-88)||(18408315-18408389)
chr3 (31-113)||(27303322-27303409)
chr3 (30-123)||(28132565-28132662)
chr3 (31-123)||(40151960-40152056)
chr3 (16-105)||(41706900-41706992)
[»] chr4 (18 HSPs)
chr4 (16-105)||(41038374-41038464)
chr4 (19-88)||(5545455-5545528)
chr4 (59-123)||(26328859-26328924)
chr4 (45-123)||(55134363-55134443)
chr4 (19-105)||(32130639-32130727)
chr4 (16-105)||(19661503-19661594)
chr4 (16-105)||(27632522-27632613)
chr4 (16-123)||(53011836-53011950)
chr4 (94-150)||(9925302-9925358)
chr4 (214-274)||(9925445-9925504)
chr4 (16-123)||(16887812-16887923)
chr4 (61-123)||(24449271-24449333)
chr4 (30-105)||(23426015-23426092)
chr4 (16-56)||(51066324-51066365)
chr4 (232-264)||(10387212-10387244)
chr4 (16-88)||(10575388-10575465)
chr4 (19-105)||(28463437-28463525)
chr4 (19-123)||(35653810-35653919)
[»] scaffold0035 (1 HSPs)
scaffold0035 (19-105)||(22654-22742)
[»] scaffold0034 (1 HSPs)
scaffold0034 (59-123)||(99086-99150)
[»] scaffold0181 (1 HSPs)
scaffold0181 (19-123)||(16962-17069)
[»] scaffold0126 (1 HSPs)
scaffold0126 (16-105)||(16834-16925)
[»] scaffold0564 (1 HSPs)
scaffold0564 (16-123)||(1185-1297)


Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 274
Target Start/End: Complemental strand, 3799703 - 3799442
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac---tctttcacttaagttttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaa 112  Q
    ||||||| ||||| ||||||||||||||||   |||||||||||| |||||||||||||||||||||||||||||| | | |||||||||||||||||||    
T  3799703 atccaaacgacaccgttaggtaaatttcacctctctttcacttaatttttttatttcgtttcatgtttagaagttcttctgattctgatttttaaatgaa 3799604  T
Q  113 gtttagctacatgaattttatacgttgttgaatgcttattagtgtttagtttttaaaatgccagtgtataattgcaaattttgtttatatgattttgata 212  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3799603 gtttagctacatgaattttatacgttgttgaatgcttattagtatttagtttttaaaatgccagtgtataattgcaaattttgtttatatgattttgata 3799504  T
Q  213 tatgttgaatgtcgaaattttttgttatatgttggatgttgaaaaatataattgttattttt 274  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||    
T  3799503 tatgttgaatgtcgaaaatttttgttatatgttggatgttgaaatatataattgctattttt 3799442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 64 - 266
Target Start/End: Original strand, 28105789 - 28106005
Alignment:
Q  64 tatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctacatgaa---ttttatacgttgttgaatgcttattagtgttta 160  Q
    |||||||||||||||||| |||||  | | ||||| |||| | ||||||| |||||||||||||   | ||||| |||| | ||||||||||| |  |||    
T  28105789 tatttcgtttcatgtttaaaagtttttctgattctaatttcttaatgaagcttagctacatgaagtttattatatgttgcttaatgcttattaataatta 28105888  T
Q  161 gtttttaaaatgccagtgtataattgcaaattttgtt------------tatatgattttgatatatgttgaatgtcgaaattttttgttatatgttgga 248  Q
     ||||||||||  |||||||||||| | |||||||||            |||||| || | |||||||| ||||||||||| |||||||||||||||| |    
T  28105889 ctttttaaaatttcagtgtataattcctaattttgttgaatgttgcaaatatatggttctaatatatgtcgaatgtcgaaa-tttttgttatatgttgaa 28105987  T
Q  249 tgttgaaaaatataattg 266  Q
    |||||||||||| |||||    
T  28105988 tgttgaaaaatacaattg 28106005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 36438292 - 36438181
Alignment:
Q  17 tccaaatgacacagttaggtaaatttcac---tctttcacttaagttt--tttatttcgtttcatgtttagaagttcatttaattctgatttttaaatga 111  Q
    |||||||||||| ||||||||||||||||   |||||||||||| |||  ||| ||| |||||||||||| |||||| | | |||||||||||| |||||    
T  36438292 tccaaatgacaccgttaggtaaatttcacctatctttcacttaattttattttgttttgtttcatgtttaaaagttcttctgattctgattttttaatga 36438193  T
Q  112 agtttagctaca 123  Q
    || |||||||||    
T  36438192 agcttagctaca 36438181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 773810 - 773712
Alignment:
Q  30 gttaggtaaatttcac---tctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctacat 124  Q
    ||||||||||||||||   |||||||||||| |||||| |||||||||||||||||||||||| | | ||| |||||||| ||||||| ||| ||||||    
T  773810 gttaggtaaatttcacatctctttcacttaattttttttatttcgtttcatgtttagaagttcttctgattttgattttttaatgaagcttaactacat 773712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 28590085 - 28589975
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac---tctttcacttaagttttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaa 112  Q
    ||||||| ||||  |||||||||| |||||   |||| ||||||| |||| |||||| |||||||||||||| ||| | | |||||||||||| ||||||    
T  28590085 atccaaacgacattgttaggtaaaattcacctctcttccacttaatttttctatttcatttcatgtttagaaattcttctgattctgattttttaatgaa 28589986  T
Q  113 gtttagctaca 123  Q
    |||||||||||    
T  28589985 gtttagctaca 28589975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 26633486 - 26633597
Alignment:
Q  17 tccaaatgacacagttaggtaaatttcac---tctttcacttaagttt--tttatttcgtttcatgtttagaagttcatttaattctgatttttaaatga 111  Q
    |||||| ||||| |||| |||||||||||   |||||||||||| |||  ||||||| |||||||||||||| |||| | | |||||||||||| |||||    
T  26633486 tccaaacgacaccgttaagtaaatttcacctctctttcacttaattttattttattttgtttcatgtttagacgttcttctgattctgattttttaatga 26633585  T
Q  112 agtttagctaca 123  Q
    || |||||||||    
T  26633586 agcttagctaca 26633597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 30739246 - 30739359
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac---tctttcacttaagtttt---ttatttcgtttcatgtttagaagttcatttaattctgatttttaaat 109  Q
    ||||||||||||| ||| ||||||||||||   ||||||||||   ||||   ||||||| |||||||| ||||||||| | | |||||||||||| |||    
T  30739246 atccaaatgacaccgtttggtaaatttcacctctctttcacttttattttattttatttcatttcatgtatagaagttcttctgattctgattttttaat 30739345  T
Q  110 gaagtttagctaca 123  Q
    ||||||||||||||    
T  30739346 gaagtttagctaca 30739359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 44002645 - 44002594
Alignment:
Q  214 atgttgaatgtcgaaattttttgttatatgttggatgttgaaaaatataattg 266  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  44002645 atgttgaatgtcgaaattttt-gttatatgttgaatgttgaaaaatataattg 44002594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 33910188 - 33910300
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctga---tttttaaatg 110  Q
    ||||||| ||||| ||||| |||||||||| |||||||||||| |||||| | ||| |||||||||||||||||  | | |||||||   ||||| ||||    
T  33910188 atccaaacgacaccgttagataaatttcacctctttcacttaattttttttaattcctttcatgtttagaagttattcttattctgatttttttttaatg 33910287  T
Q  111 aagtttagctaca 123  Q
    |||||||||||||    
T  33910288 aagtttagctaca 33910300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 40841138 - 40841092
Alignment:
Q  59 ttttttatttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||    
T  40841138 ttttttatttcgtttcatgtttagaagttcttctaattctgattttt 40841092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 18015517 - 18015409
Alignment:
Q  19 caaatgacacagttaggtaaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgat--ttttaaatgaagt 114  Q
    |||| ||||| ||| | |||||||||| |||||||||||| |||||| | ||| |||||||||||||||||| | ||||||||||  |||| |||||| |    
T  18015517 caaacgacaccgtttgataaatttcacctctttcacttaattttttttaattcctttcatgtttagaagttcttctaattctgattttttttaatgaaat 18015418  T
Q  115 ttagctaca 123  Q
    |||||||||    
T  18015417 ttagctaca 18015409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 41852238 - 41852131
Alignment:
Q  19 caaatgacacagttaggtaaatttcac---tctttcacttaagttttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtt 115  Q
    |||| ||||| ||||| ||||||||||   |||||||||||| ||||||||||||||| | ||||| |||||| | | |||||||||| | ||||||  |    
T  41852238 caaacgacaccgttagataaatttcacatctctttcacttaatttttttatttcgtttgacgtttaaaagttcttctgattctgatttcttaatgaaact 41852139  T
Q  116 tagctaca 123  Q
    ||||||||    
T  41852138 tagctaca 41852131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 42312139 - 42312244
Alignment:
Q  24 gacacagttaggtaaatttcac---tctttcacttaagtttt---ttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagttta 117  Q
    ||||| |||| |||||||||||   |||||||||||| ||||   |||||||||||||||||||||||||| | | ||||| |||||| ||||||| |||    
T  42312139 gacaccgttaagtaaatttcacctctctttcacttaattttttttttatttcgtttcatgtttagaagttcttctgattctaattttttaatgaagctta 42312238  T
Q  118 gctaca 123  Q
     |||||    
T  42312239 actaca 42312244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 197
Target Start/End: Complemental strand, 44002827 - 44002681
Alignment:
Q  59 ttttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctacatgaa--------ttttatacgttgttgaatgctta 150  Q
    ||||||||||| |||||||||||||||||| | | ||| | |||||| ||||||| ||||||||| |||        | ||| |||||| | ||||||||    
T  44002827 ttttttatttcatttcatgtttagaagttcttctgattataattttttaatgaagcttagctacacgaactttaatttgttacacgttgcttaatgctta 44002728  T
Q  151 ttagtgtttagtttttaaaatgccagtgtataattgcaaattttgtt 197  Q
    |||||  ||| ||||||||||  || ||||||||||| |||||||||    
T  44002727 ttagtaattactttttaaaatttcaatgtataattgctaattttgtt 44002681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 40737939 - 40737831
Alignment:
Q  19 caaatgacacagttaggtaaatttca---ctctttcacttaagtt--ttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaag 113  Q
    |||||||||| |||||||||||||||   ||||||||||| | ||  |||||||| ||||||| |||| |||||| ||| ||||||| |||| |||||||    
T  40737939 caaatgacaccgttaggtaaatttcacctctctttcactttattttattttattttgtttcat-tttaaaagttcttttgattctgactttttaatgaag 40737841  T
Q  114 tttagctaca 123  Q
     |||||||||    
T  40737840 cttagctaca 40737831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 42161062 - 42160971
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    ||||||| ||||| ||||| |||||||||| |||||||||||| |||||| | ||| |||||||||||||||||  | | ||||||||||||    
T  42161062 atccaaacgacaccgttagataaatttcacctctttcacttaattttttttaattcctttcatgtttagaagttattctgattctgattttt 42160971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 1366163 - 1366243
Alignment:
Q  45 ctctttcacttaagtttttt--atttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 123  Q
    ||||||||||||| ||||||  ||||||||||||||||| ||| || | | |||||||||||| ||| ||| |||||||||    
T  1366163 ctctttcacttaatttttttgtatttcgtttcatgtttacaagctcttctgattctgattttttaataaagcttagctaca 1366243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 12251228 - 12251136
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac-tctttcacttaagttttttat--ttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    ||||||| | ||| ||||| |||||||||| |||||||||||| |||||| |  ||| |||||||||||||||||| | | ||||||||||||    
T  12251228 atccaaacgtcaccgttagataaatttcacctctttcacttaatttttttttaattcctttcatgtttagaagttcttctgattctgattttt 12251136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 25610220 - 25610300
Alignment:
Q  45 ctctttcacttaagtttttt--atttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 123  Q
    ||||||||||||| ||||||  |||||||||||||||| |||| || | | |||||||||||| ||| ||| |||||||||    
T  25610220 ctctttcacttaatttttttgtatttcgtttcatgtttggaagctcttctgattctgattttttaataaagcttagctaca 25610300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 123
Target Start/End: Complemental strand, 44876085 - 44875989
Alignment:
Q  31 ttaggtaaatttca---ctctttcacttaagtttttt---atttcgtttcatgtttagaagttcatttaattctga-tttttaaatgaagtttagctaca 123  Q
    ||||||||||||||   ||||||||||||| ||||||   ||||| ||||||||||||||||||   | ||||||| ||||| |||||||||||||||||    
T  44876085 ttaggtaaatttcatctctctttcacttaattttttttttatttcatttcatgtttagaagttc---ttattctgatttttttaatgaagtttagctaca 44875989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 21145492 - 21145562
Alignment:
Q  30 gttaggtaaatttcact---ctttcacttaagttttttatttcgtttcatgtttagaagttcatttaattc 97  Q
    ||||||||||||||||    ||||||||||| |||||||||||||||||||| || |||||| | ||||||    
T  21145492 gttaggtaaatttcacctccctttcacttaatttttttatttcgtttcatgtataaaagttcttctaattc 21145562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 29731021 - 29730917
Alignment:
Q  19 caaatgacacagttaggtaaatttcac---tctttcacttaagttttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtt 115  Q
    |||| ||||| ||||||||||||||||   ||||||||| |   ||||| ||||||||||||||||||||||  | | ||| |||||||| ||||||  |    
T  29731021 caaacgacactgttaggtaaatttcacctctctttcactaa---tttttttttcgtttcatgtttagaagtttttctgattgtgattttttaatgaaact 29730925  T
Q  116 tagctaca 123  Q
    ||||||||    
T  29730924 tagctaca 29730917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 46221643 - 46221551
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac-tctttcacttaagtttttt---atttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    |||||||||| |  ||||| ||||||| || |||||||||||| ||||||   ||||| |||||||||||||||||| | ||||||||||||||    
T  46221643 atccaaatgatatcgttagataaattttacctctttcacttaatttttttttaatttc-tttcatgtttagaagttcttctaattctgattttt 46221551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 6380004 - 6379913
Alignment:
Q  36 taaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgat--ttttaaatgaagtttagctaca 123  Q
    |||||||||| |||||||||||| |||||| | ||| |||||| ||||||||||| ||  ||||||||  |||| ||||||||||| |||||    
T  6380004 taaatttcacctctttcacttaattttttttaattcctttcatatttagaagttctttcgattctgattttttttaatgaagtttaactaca 6379913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 40001621 - 40001566
Alignment:
Q  45 ctctttcacttaagtttttt--atttcgtttcatgtttagaagttcatttaattct 98  Q
    ||||||||||||| ||||||  ||||||||||||||||||||| || | |||||||    
T  40001621 ctctttcacttaatttttttgtatttcgtttcatgtttagaagctcttctaattct 40001566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 266
Target Start/End: Original strand, 50371271 - 50371527
Alignment:
Q  30 gttaggtaaatttcac---tctttcacttaagtttt-ttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctacatg 125  Q
    ||||||||||||||||   |||||||||||| |||| |||||||||||||||||||||||||| | | |||||||||||| ||||||| |||||||||      
T  50371271 gttaggtaaatttcacctctctttcacttaattttttttatttcgtttcatgtttagaagttcttatgattctgattttttaatgaagcttagctacaca 50371370  T
Q  126 aatt---ttatacgttgttgaatgcttattagtgtttagtttttaaaatgccagtgtataattgcaaattttgtt------------tatatgattttga 210  Q
    ||||   ||||| |||| | ||||||||| |||  ||| | || |||||  || ||||||||||  |||||||||            |||||| || | |    
T  50371371 aattttgttataagttgcttaatgcttatcagtaattactcttcaaaatttcaatgtataattgttaattttgttgaatgttgcaaatatatggttctaa 50371470  T
Q  211 tatatgttgaatgtcgaa-attttttgttatatgttggatgttgaaaaatataattg 266  Q
    |||||||||||||| |||  ||||||||||||||||| |||||||||||||||||||    
T  50371471 tatatgttgaatgttgaattttttttgttatatgttgaatgttgaaaaatataattg 50371527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 9777536 - 9777649
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcact---ctttcacttaagtttttt---atttcgtttcatgtttagaagttcatttaattctgatttttaaat 109  Q
    ||||||| ||||| |||||||||||||||||   ||||||||||| ||||||   |||| ||||||||||||||||||  | |||||||||||||| |||    
T  9777536 atccaaacgacaccgttaggtaaatttcacttctctttcacttaattttttttttatttagtttcatgtttagaagttattctaattctgattttttaat 9777635  T
Q  110 gaagtttagctaca 123  Q
    ||||||||||||||    
T  9777636 gaagtttagctaca 9777649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 59 - 194
Target Start/End: Complemental strand, 39080515 - 39080377
Alignment:
Q  59 ttttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctacatgaatt---ttatacgttgttgaatgcttattagt 155  Q
    ||||||||||| |||||||||||||||||| | | |||||||||||| ||||||| ||||||||||| |||   |||||| ||| | |||||||||| ||    
T  39080515 ttttttatttcatttcatgtttagaagttcttatgattctgatttttcaatgaagcttagctacatggattttgttatacattgcttaatgcttatttgt 39080416  T
Q  156 gtttagtttttaaaatgccagtgtataattgcaaatttt 194  Q
      |||  |||||||||  |||||||||||||| ||||||    
T  39080415 aattacgttttaaaatttcagtgtataattgctaatttt 39080377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 26486314 - 26486205
Alignment:
Q  17 tccaaatgacacagttaggtaaatttcac-tctttcacttaagttt--tttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaag 113  Q
    |||||||||||| ||| |||||||||||| ||||||| |||| |||  ||||||| |||||||||||| |||||| | | ||||||||||||||||||||    
T  26486314 tccaaatgacaccgtttggtaaatttcacctctttcaattaattttattttattttgtttcatgtttaaaagttcttctgattctgatttttaaatgaag 26486215  T
Q  114 tttagctaca 123  Q
     |||||||||    
T  26486214 cttagctaca 26486205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 28885611 - 28885520
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    ||||||| ||||| ||||| |||||||||| |||||||||||| |||||| | ||| |||||||||||||||||| | ||||||||||||||    
T  28885611 atccaaacgacaccgttagataaatttcacctctttcacttaattttttttaattcctttcatgtttagaagttcttctaattctgattttt 28885520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 15441412 - 15441512
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac---tctttcacttaagttttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaa 112  Q
    ||||||| ||| | ||||||||||||||||   |||||||||||  ||||||||| |||||||||||||||||||| | | ||| |||||||| ||||||    
T  15441412 atccaaacgacgccgttaggtaaatttcacctctctttcacttattttttttattccgtttcatgtttagaagttcttctgattttgattttttaatgaa 15441511  T
Q  113 g 113  Q
    |    
T  15441512 g 15441512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 51110038 - 51109950
Alignment:
Q  19 caaatgacacagttaggtaaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    |||||||||| ||||| |||||||||| |||||||||||| |||||| | ||| |||||||||||||| ||| | ||||||||||||||    
T  51110038 caaatgacaccgttagataaatttcacctctttcacttaattttttttaattcctttcatgtttagaaattcttctaattctgattttt 51109950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 50552619 - 50552710
Alignment:
Q  16 atccaaatgacacagttaggtaaatttca-ctctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    ||||||| |||||  |||| ||||||||| ||||||||||||| |||||| | ||| |||||||||||||||||| ||| ||||||||||||    
T  50552619 atccaaacgacaccattagataaatttcatctctttcacttaattttttttaattcctttcatgtttagaagttcttttgattctgattttt 50552710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 52240473 - 52240365
Alignment:
Q  19 caaatgacacagttaggtaaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgat--ttttaaatgaagt 114  Q
    |||| ||||| ||||| |||||||||| |||||||||||| |||||| | ||| |||||| ||||||||||| | | ||||||||  |||| ||||||||    
T  52240473 caaacgacactgttagataaatttcacctctttcacttaattttttttaattcctttcatatttagaagttcttctgattctgattttttttaatgaagt 52240374  T
Q  115 ttagctaca 123  Q
    |||||||||    
T  52240373 ttagctaca 52240365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 25930727 - 25930838
Alignment:
Q  16 atccaaatgacacagttaggtaaatttca-ctctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctga--tttttaaatga 111  Q
    ||||||| ||||| ||||| ||||||||| ||||||||||||| |||||| | ||| |||||| |||||||| || | | |||||||  ||||| |||||    
T  25930727 atccaaacgacaccgttagataaatttcatctctttcacttaattttttttaattcttttcatatttagaagctcttctgattctgattttttttaatga 25930826  T
Q  112 agtttagctaca 123  Q
    ||||||||||||    
T  25930827 agtttagctaca 25930838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 27703471 - 27703382
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac---tctttcacttaagttttttatttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    ||||||| ||||| ||||||||||||||||   || |||||||||   |||||||||||||||||||||||||||  | | ||||||||||||    
T  27703471 atccaaacgacactgttaggtaaatttcacctctccttcacttaa---ttttatttcgtttcatgtttagaagttattatgattctgattttt 27703382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 105
Target Start/End: Original strand, 1269717 - 1269768
Alignment:
Q  54 ttaagttttttatttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    |||| ||||||||||||||||||||||||||||||  || ||||||||||||    
T  1269717 ttaatttttttatttcgtttcatgtttagaagttctattgattctgattttt 1269768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 6333459 - 6333396
Alignment:
Q  16 atccaaatgacacagttaggtaaatttca-ctctttcacttaa-gttttttatttcgtttcatg 77  Q
    ||||||| ||||| ||||||||||||||| |||||||||||||  |||||||||||||||||||    
T  6333459 atccaaacgacactgttaggtaaatttcatctctttcacttaattttttttatttcgtttcatg 6333396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 30899782 - 30899875
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac-tctttcacttaagttttttatt---tcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    ||||||| ||||| ||||| |||||||||| |||||||||||| |||||| ||   || |||||||||||||||||| | | ||||||||||||    
T  30899782 atccaaacgacaccgttagataaatttcacctctttcacttaattttttttttaattcctttcatgtttagaagttcttctgattctgattttt 30899875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 131 - 245
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac-tctttcacttaagttttttat--ttcgtttcatgtttagaagttcatttaattctgattttta----aa 108  Q
    ||||||| ||||| ||||| |||||||||| |||||||||||| |||||| |  ||| |||||||||| ||||||| ||| ||| ||||||||     ||    
T  131 atccaaacgacaccgttagataaatttcacctctttcacttaatttttttttaattcctttcatgtttggaagttcttttgattttgattttttttttaa 230  T
Q  109 tgaagtttagctaca 123  Q
    |||||||||||||||    
T  231 tgaagtttagctaca 245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 119
Target Start/End: Original strand, 5560625 - 5560713
Alignment:
Q  35 gtaaatttca-ctctttcacttaagttttt---tatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagc 119  Q
    |||||||||| ||||||||||||  |||||   ||||| ||||||||||||||||||| ||| |||| ||| ||| |||||||||||||    
T  5560625 gtaaatttcatctctttcacttatttttttatttattttgtttcatgtttagaagttcttttgattcagatcttttaatgaagtttagc 5560713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 20470736 - 20470844
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac-tctttcacttaagtttt-ttatttcgtttcatgtttagaagttcatttaattct-gatttttaaatgaa 112  Q
    |||||||  |||| ||||| |||||||||| |||||||||||| |||| ||| ||| |||||||||||||| ||| | ||||||| | ||||| ||||||    
T  20470736 atccaaacaacaccgttagataaatttcacctctttcacttaatttttgttaattcctttcatgtttagaacttcttctaattctggtttttttaatgaa 20470835  T
Q  113 gtttagcta 121  Q
     ||||||||    
T  20470836 atttagcta 20470844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 30004834 - 30004736
Alignment:
Q  30 gttaggtaaatttcac-tctttcacttaagttttttat--ttcgtttcatgtttagaagttcatttaattctgattt--ttaaatgaagtttagctaca 123  Q
    ||||| |||||||||| | |||||||||| |||||| |  ||| |||||||||||||||||| | | ||||||||||  || |||||||||||||||||    
T  30004834 gttagataaatttcacctttttcacttaatttttttttaattcctttcatgtttagaagttcttctgattctgatttaattcaatgaagtttagctaca 30004736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 44836666 - 44836573
Alignment:
Q  17 tccaaatgacacagttaggtaaatttcac---tctttcacttaagttt--tttatttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    |||||||||||| | ||||||||||||||   |||||||||||| |||  ||||||| |||||||||||| |||||| | | ||||| ||||||    
T  44836666 tccaaatgacaccgctaggtaaatttcacatctctttcacttaattttattttattttgtttcatgtttaaaagttcttatgattctaattttt 44836573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 6150846 - 6150920
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttc 88  Q
    ||||||| ||||| ||||| |||||||||| | |||||||||| |||||| | ||| ||||||||||||||||||    
T  6150846 atccaaacgacaccgttagataaatttcacctatttcacttaattttttttaattcctttcatgtttagaagttc 6150920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 20905226 - 20905114
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcact-ctttcacttaagttttttat--ttcgtttcatgtttagaagttcatttaattctgattttta--aatg 110  Q
    ||||||| ||||| ||| | ||||||||||  |||||||||||||||||| |  ||| |||||| ||||||||||| | | |||||| |||||   ||||    
T  20905226 atccaaacgacaccgttggataaatttcaccactttcacttaagttttttttaattcctttcatatttagaagttcttcttattctggttttttttaatg 20905127  T
Q  111 aagtttagctaca 123  Q
    |||||||||||||    
T  20905126 aagtttagctaca 20905114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 14084640 - 14084548
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac-tctttcacttaagttttttat--ttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    ||||||| |||||  |||| |||||||||| ||||||| |||| |||||| |  ||| |||||||||||||||||| | | ||||||||||||    
T  14084640 atccaaacgacaccattagataaatttcacctctttcatttaatttttttttaattcctttcatgtttagaagttcttctgattctgattttt 14084548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 18127877 - 18127786
Alignment:
Q  16 atccaaatgacacagttaggtaaatttca-ctctttcacttaagtttttt--atttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    ||||||| ||||| ||||||||||||| | ||||||||||||| ||||||  ||||| ||| |||||||||||||| | | |||||| |||||    
T  18127877 atccaaacgacaccgttaggtaaattttacctctttcacttaattttttttaatttc-tttaatgtttagaagttcttatgattctgtttttt 18127786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 25 - 123
Target Start/End: Original strand, 11088701 - 11088805
Alignment:
Q  25 acacagttaggtaaatttcac---tctttcacttaagt---tttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttag 118  Q
    |||| ||||||||||||||||   |||||||||||| |   ||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||    
T  11088701 acactgttaggtaaatttcacctctctttcacttaattctttttttatttcgtttcatgtttagaagttcttctaattctgattttttaatgaagtttag 11088800  T
Q  119 ctaca 123  Q
    |||||    
T  11088801 ctaca 11088805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 350587 - 350652
Alignment:
Q  59 ttttttatttcgtttcatgtttagaagttcatt-taattctgatttttaaatgaagtttagctaca 123  Q
    |||||||||||||||||||||||||||||| || ||||||| |||||| |||||||||||||||||    
T  350587 ttttttatttcgtttcatgtttagaagttctttctaattctaattttttaatgaagtttagctaca 350652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 57812 - 57918
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac-tctttcacttaagttttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagt 114  Q
    ||||||| ||||| ||||| |||||||||| |||||||||||| ||||||| ||| |||||| ||||||||||| ||| ||  |  ||||| ||||||||    
T  57812 atccaaacgacaccgttagataaatttcacctctttcacttaatttttttaattcctttcatatttagaagttcttttgatatt--ttttttaatgaagt 57909  T
Q  115 ttagctaca 123  Q
    |||||||||    
T  57910 ttagctaca 57918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 6294377 - 6294490
Alignment:
Q  17 tccaaatgacacagttaggtaaatttcac---tctttcacttaagttt--tttatttcgtttcatgtttagaagttcatttaattctga--tttttaaat 109  Q
    |||||| ||||| ||||||||||||||||   |||||||| ||| |||  ||||||| ||||||||||||||||||| ||| |||||||  ||||| |||    
T  6294377 tccaaacgacaccgttaggtaaatttcacctctctttcacataattttattttattttgtttcatgtttagaagttcttttgattctgattttttttaat 6294476  T
Q  110 gaagtttagctaca 123  Q
    |||| |||||||||    
T  6294477 gaagcttagctaca 6294490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 124
Target Start/End: Complemental strand, 1092951 - 1092870
Alignment:
Q  45 ctctttcacttaagtttttt--atttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctacat 124  Q
    ||||||||||||| ||||||  ||||||||||||||||||||| || ||| ||||| |||||| ||| ||| ||||||||||    
T  1092951 ctctttcacttaatttttttgtatttcgtttcatgtttagaagctcttttgattctaattttttaataaagcttagctacat 1092870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 2618479 - 2618569
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac-tctttcacttaagttttttatttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    ||||||| ||||| ||| | |||||||||| |||||||||||| ||||||| ||  ||||||||||| |||||| | | ||||||||||||    
T  2618479 atccaaacgacaccgttggataaatttcacctctttcacttaatttttttaattgctttcatgtttaaaagttcttcttattctgattttt 2618569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 29308377 - 29308297
Alignment:
Q  45 ctctttcacttaagtttttt--atttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 123  Q
    ||||||||||||| ||||||  ||||||||||||||||||||| || | | |||||||||||| ||| ||| ||| |||||    
T  29308377 ctctttcacttaatttttttgtatttcgtttcatgtttagaagctcttatgattctgattttttaataaagcttaactaca 29308297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 30915271 - 30915191
Alignment:
Q  45 ctctttcacttaagttt--tttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 123  Q
    ||||||||||||| |||  ||||||| |||||||||||| |||||| | | |||||||||||| ||||||| ||| |||||    
T  30915271 ctctttcacttaattttattttattttgtttcatgtttataagttcttctgattctgattttttaatgaagcttaactaca 30915191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 6360886 - 6360974
Alignment:
Q  19 caaatgacacagttaggtaaatttca-ctctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    |||| ||||| ||||| ||||||||| ||||||||||||  |||||| | ||| |||||||||||||||||| ||| ||| ||||||||    
T  6360886 caaacgacaccgttagataaatttcatctctttcacttatttttttttaattcctttcatgtttagaagttcttttgattttgattttt 6360974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 31258512 - 31258404
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac-tctttcacttaagtttt-ttatttcgtttcatgtttagaagttcatttaattct-gatttttaaatgaa 112  Q
    |||||||  |||| ||||| |||||||||| |||||||||||| |||| ||| ||| |||||||||||||| ||| | ||||||| | ||||| ||||||    
T  31258512 atccaaacaacaccgttagataaatttcacctctttcacttaatttttgttaattcctttcatgtttagaacttcttctaattctggtttttttaatgaa 31258413  T
Q  113 gtttagcta 121  Q
     ||||||||    
T  31258412 atttagcta 31258404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 3514790 - 3514699
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    ||||||| |||||  |||| |||||||||| |||||||||||| |||||| | ||| ||||||||||| |||||| | | ||||||||||||    
T  3514790 atccaaacgacaccattagataaatttcacctctttcacttaattttttttaattcctttcatgtttaaaagttcttctgattctgattttt 3514699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 3748509 - 3748398
Alignment:
Q  17 tccaaatgacacagttaggtaaatttca---ctctttcacttaagtt--ttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatga 111  Q
    |||||||||||| |||||||||||||||   ||||||||||||| ||  |||| |||  |||||| |||| |||||| | | ||| ||| |||| |||||    
T  3748509 tccaaatgacaccgttaggtaaatttcacatctctttcacttaattttattttgttttatttcatatttaaaagttcttctgattttgactttttaatga 3748410  T
Q  112 agtttagctaca 123  Q
    || |||||||||    
T  3748409 agcttagctaca 3748398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 6754330 - 6754395
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac-tctttcacttaagttttttatttcgtttcatgttt 80  Q
    ||||||||||||| |||   |||||||||| |||||||||||| ||||||| ||| ||||||||||    
T  6754330 atccaaatgacaccgttgaataaatttcacctctttcacttaatttttttaattcctttcatgttt 6754395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 1690611 - 1690547
Alignment:
Q  59 ttttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 123  Q
    |||| |||||||||||||||||||||| |  | | ||||||||||||  || |||||||||||||    
T  1690611 ttttgtatttcgtttcatgtttagaagcttttctgattctgatttttttataaagtttagctaca 1690547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 12614644 - 12614584
Alignment:
Q  30 gttaggtaaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttc 88  Q
    ||||| |||||||||| |||||||||||| |||||| | ||| ||||||||||||||||||    
T  12614644 gttagataaatttcacctctttcacttaattttttttaattcctttcatgtttagaagttc 12614584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 197
Target Start/End: Original strand, 17463018 - 17463156
Alignment:
Q  62 tttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctacatgaatt---ttatacgttgttgaatgcttattagtgtt 158  Q
    ||||||||||||||||||||||||||| | |||||||  ||||| ||||||| ||| ||||| |||||   |||||| ||| | |||||||||||||  |    
T  17463018 tttatttcgtttcatgtttagaagttcttctaattctagttttttaatgaagcttaactacacgaattttgttatacattgcttaatgcttattagtaat 17463117  T
Q  159 tagtttttaaaatgccagtgtataattgcaaattttgtt 197  Q
    || ||||||||||  |||||||| ||||| |||||||||    
T  17463118 tactttttaaaatttcagtgtatcattgctaattttgtt 17463156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 12661433 - 12661523
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac-tctttcacttaagttttttatttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    ||||||| ||||| ||||| |||||||||| |||||||||||| ||||||| ||| |||||||||||||||||| | | ||||||||||||    
T  12661433 atccaaacgacactgttagataaatttcacatctttcacttaatttttttaattcctttcatgtttagaagttcttctgattctgattttt 12661523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 185
Target Start/End: Original strand, 4177370 - 4177499
Alignment:
Q  59 ttttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctacatgaatt---ttatacgttgttgaatgcttattagt 155  Q
    |||||||||| ||||||||||||||||||| | | ||| |||||||| ||||||| ||| ||||| |||||   |||||| ||| | |||| ||||||||    
T  4177370 ttttttattttgtttcatgtttagaagttcttctgattatgattttttaatgaagcttaactacacgaattttgttatacattgcttaatgattattagt 4177469  T
Q  156 gtttagtttttaaaatgccagtgtataatt 185  Q
      ||| ||||||||||  ||||||||||||    
T  4177470 aattactttttaaaatttcagtgtataatt 4177499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 19099254 - 19099145
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac-tctttcacttaagtttt-ttatttcgtttcatgtttagaagttcatttaattctga--tttttaaatga 111  Q
    ||||||| ||||| ||||| |||||||||| |||||||||||| |||| ||| ||| |||||||||||||||||| | | |||||||  ||||| |||||    
T  19099254 atccaaacgacaccgttagataaatttcacctctttcacttaatttttcttaattcttttcatgtttagaagttcttctgattctgaattttttcaatga 19099155  T
Q  112 agtttagcta 121  Q
    ||||||||||    
T  19099154 agtttagcta 19099145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 23069350 - 23069458
Alignment:
Q  19 caaatgacacagttaggtaaatttcac---tctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagt 114  Q
    |||| ||||| ||||||||||||||||   ||||||| |||| |||||| ||| |||||||| ||||||||||| | ||||| |||||||| |||||||     
T  23069350 caaacgacaccgttaggtaaatttcacatttctttcatttaattttttttattacgtttcatatttagaagttcttctaattttgattttttaatgaagc 23069449  T
Q  115 ttagctaca 123  Q
    |||||||||    
T  23069450 ttagctaca 23069458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 123
Target Start/End: Original strand, 27351487 - 27351583
Alignment:
Q  31 ttaggtaaatttcac---tctttcacttaagtttt-ttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 123  Q
    |||||||||||||||   |||||||||||| |||| ||||||| |||||||||||||||||| | | ||||  |||||| |||||||||||||||||    
T  27351487 ttaggtaaatttcacctctctttcacttaattttttttatttcctttcatgtttagaagttcttctgattcgaattttttaatgaagtttagctaca 27351583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 26312112 - 26312222
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctga-tttttaaatgaa 112  Q
    ||||||| ||||| ||||| |||||||||| |||||||||||| |||||| | ||| |||||||||||||| ||| | | ||||||| ||||| ||||||    
T  26312112 atccaaacgacaccgttagataaatttcacctctttcacttaattttttttaattcctttcatgtttagaacttcttctgattctgatttttttaatgaa 26312211  T
Q  113 gtttagctaca 123  Q
     ||||||||||    
T  26312212 atttagctaca 26312222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 26377713 - 26377623
Alignment:
Q  16 atccaaatgacacagttaggtaaatttca-ctctttcacttaagttttttatttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    ||||||| ||||| ||||| ||||||||| |||||||||||||  |||||| ||| |||||||||||||| ||| | | ||||||||||||    
T  26377713 atccaaacgacaccgttagataaatttcatctctttcacttaatatttttaattcctttcatgtttagaacttcttctgattctgattttt 26377623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 33281829 - 33281908
Alignment:
Q  45 ctctttcacttaagttttt-tatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 123  Q
    ||||||||||||  ||||| ||||| ||||||||||||||||||| ||| ||| |||| ||| ||||||||||| |||||    
T  33281829 ctctttcacttatttttttatattttgtttcatgtttagaagttcttttgattatgatcttttaatgaagtttaactaca 33281908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 17325968 - 17326079
Alignment:
Q  17 tccaaatgacacagttaggtaaatttcac---tctttcacttaagttt--tttatttcgtttcatgtttagaagttcatttaattctgatttttaaatga 111  Q
    |||||| ||||| ||||||||||||||||   |||||||||| | |||  ||| ||| ||||| |||||| |||||| | | |||||||||||| |||||    
T  17325968 tccaaacgacaccgttaggtaaatttcacctatctttcactttattttattttgttttgtttcgtgtttaaaagttcttctgattctgattttttaatga 17326067  T
Q  112 agtttagctaca 123  Q
    | ||||||||||    
T  17326068 attttagctaca 17326079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 37046905 - 37046996
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac-tctttcacttaagtttttt--atttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    ||||||| ||||| ||||| |||||||||| ||||||| |||| ||||||  ||||| |||||||||||||| ||| | ||||||||||||||    
T  37046905 atccaaacgacaccgttagataaatttcacctctttcatttaattttttttaatttc-tttcatgtttagaacttcttctaattctgattttt 37046996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 43511772 - 43511852
Alignment:
Q  45 ctctttcacttaagtttttt--atttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 123  Q
    ||||||||||||| ||||||  ||||||||||||||||||||| ||   | |||||||||||| ||| ||| |||||||||    
T  43511772 ctctttcacttaatttttttgtatttcgtttcatgtttagaagctctgctgattctgattttttaataaagcttagctaca 43511852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 18873583 - 18873694
Alignment:
Q  17 tccaaatgacacagttaggtaaatttcac---tctttcacttaagttt--tttatttcgtttcatgtttagaagttcatttaattctgatttttaaatga 111  Q
    |||||| || || ||||||||||||||||   |||||||||||| |||  ||| ||| |||||||||||| |||||  | | ||||| |||||| |||||    
T  18873583 tccaaacgaaaccgttaggtaaatttcacctttctttcacttaactttattttgttttgtttcatgtttaaaagtttttctgattctaattttttaatga 18873682  T
Q  112 agtttagctaca 123  Q
    |||||| |||||    
T  18873683 agtttaactaca 18873694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 931539 - 931584
Alignment:
Q  59 ttttttatttcgtttcatgtttagaagttcatttaattctgatttt 104  Q
    ||||| |||||||||||||||||||||||  | |||||||||||||    
T  931539 tttttaatttcgtttcatgtttagaagtttttctaattctgatttt 931584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 3349639 - 3349559
Alignment:
Q  45 ctctttcacttaagtttttt--atttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 123  Q
    |||||||||| |||||||||  |||| |||||||||||||||  || | | |||||||||||| ||| ||| |||||||||    
T  3349639 ctctttcactcaagttttttgtatttagtttcatgtttagaaactcttctgattctgattttttaataaagcttagctaca 3349559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 13288613 - 13288712
Alignment:
Q  59 ttttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctacatgaatt---ttatacgttgttgaatgcttattagt 155  Q
    |||||||||| |||||||||||| | |||| | | ||| |||||||| ||||||  ||||||||| |||||   |||||| ||| | |||||||||||||    
T  13288613 ttttttattttgtttcatgtttaaatgttcttctgattatgattttttaatgaaacttagctacaagaattttgttatacattgcttaatgcttattagt 13288712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 42291791 - 42291709
Alignment:
Q  45 ctctttcacttaagtttttt----atttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 123  Q
    ||||||||||||| ||||||    ||||||||||||||||||||| || | | ||||||||||||  || ||||||| |||||    
T  42291791 ctctttcacttaatttttttttgtatttcgtttcatgtttagaagctcttctgattctgatttttttataaagtttaactaca 42291709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 266
Target Start/End: Original strand, 13288780 - 13288835
Alignment:
Q  210 atatatgttgaatgtcgaaattttttgttatatgttggatgttgaaaaatataattg 266  Q
    |||||||||||||| ||||| ||||| |||||||||| | || ||||||||||||||    
T  13288780 atatatgttgaatgccgaaa-tttttattatatgttgaaggtcgaaaaatataattg 13288835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 1226209 - 1226096
Alignment:
Q  16 atccaaatgacacagttaggtaaatttca---ctctttcacttaagtttttt--atttcgtttcatgtttagaagttcatttaattctgat-ttttaaat 109  Q
    ||||||| ||||  |||||||||||||||   ||||||||||||| ||||||  |||||||||||||||||||||||| | |||||||||| |||| |||    
T  1226209 atccaaacgacatcgttaggtaaatttcatctctctttcacttaatttttttttatttcgtttcatgtttagaagttcttctaattctgatttttttaat 1226110  T
Q  110 gaagtttagctaca 123  Q
    ||||||||||||||    
T  1226109 gaagtttagctaca 1226096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 59 - 197
Target Start/End: Original strand, 26261444 - 26261586
Alignment:
Q  59 ttttttatttcgtttcatgtttagaagttcatttaattctga-tttttaaatgaagtttagctacatgaatt---ttatacgttgttgaatgcttattag 154  Q
    |||||||||||||||||||||||||||||| | | ||| ||| ||||| ||||||| |||| |||| |||||   ||||| |||| | ||||||||||||    
T  26261444 ttttttatttcgtttcatgtttagaagttcttatgattatgatttttttaatgaagcttagttacacgaattttgttatatgttgcttaatgcttattag 26261543  T
Q  155 tgtttagtttttaaaatgccagtgtataattgcaaattttgtt 197  Q
    |  ||| ||||||||||  |||||||||||||| | |||||||    
T  26261544 taattactttttaaaatttcagtgtataattgctagttttgtt 26261586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 7993757 - 7993847
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac-tctttcacttaagttttttatttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    ||||||| ||||| ||||| |||||||||| |||||||||||  ||||||| ||| |||||||||||||||||| | | ||||||||||||    
T  7993757 atccaaacgacaccgttagataaatttcacatctttcacttattttttttaattcctttcatgtttagaagttcttctgattctgattttt 7993847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 36059815 - 36059735
Alignment:
Q  45 ctctttcacttaagttt--tttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 123  Q
    ||||||||||||| |||  ||||||| ||||||||||||||||||| | | | |||||||||| |||||||||||||||||    
T  36059815 ctctttcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagtttagctaca 36059735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 105
Target Start/End: Original strand, 6530779 - 6530874
Alignment:
Q  12 acagatccaaatgacacagttaggtaaatttca-ctctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    |||||| |||| | ||| ||||| ||||||||| ||||||||||||| |||||| | ||| |||||||||||||||||| ||| ||||||||||||    
T  6530779 acagattcaaacgtcactgttagataaatttcatctctttcacttaattttttttaattcctttcatgtttagaagttcttttgattctgattttt 6530874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 13020550 - 13020637
Alignment:
Q  19 caaatgacacagttaggtaaatttcac-tctttcacttaagttttttatttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    |||||||||| ||||| |||||||||| ||||||||||||  |||||  ||| |||||||||||||| ||| | ||||||||||||||    
T  13020550 caaatgacaccgttagataaatttcacctctttcacttaatcttttttattcctttcatgtttagaacttcttctaattctgattttt 13020637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 9029717 - 9029811
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac---tctttcactta--agttttttatttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    ||||||| ||||| ||| ||||||||||||   |||||||||||  | ||||||||||||||||||||||||||||||  || ||| ||||||||    
T  9029717 atccaaacgacaccgtttggtaaatttcacctctctttcacttattaattttttatttcgtttcatgtttagaagttctattgattatgattttt 9029811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 17117555 - 17117475
Alignment:
Q  45 ctctttcacttaagtttttt--atttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 123  Q
    ||||||||||||| ||||||  ||||||||||||||||||||| || | | |||||||||||| ||| ||| |||||||||    
T  17117555 ctctttcacttaatttttttgtatttcgtttcatgtttagaagctcttctgattctgattttttaataaagcttagctaca 17117475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 146
Target Start/End: Complemental strand, 4264770 - 4264680
Alignment:
Q  59 ttttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctacatgaat---tttatacgttgttgaatg 146  Q
    ||||||||||| |||||| ||||||||||| ||| ||||| ||||||  ||||||||||||| || ||||   ||||||||||||| ||||    
T  4264770 ttttttatttcatttcatctttagaagttcttttgattctaattttttgatgaagtttagctgcacgaatttctttatacgttgtttaatg 4264680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 31273107 - 31273006
Alignment:
Q  16 atccaaatgacacagttaggtaaatttca---ctctttcacttaagtttt-ttatttcgtttcatgtttagaagttcatttaattctgatttttaaatga 111  Q
    ||||||| |||||||||||||||||||||   ||||||| ||||| |||| ||| ||||||| || ||||||||||| | | ||| |||||||| |||||    
T  31273107 atccaaacgacacagttaggtaaatttcacttctctttcgcttaatttttcttaattcgtttaatttttagaagttcttctgattttgattttttaatga 31273008  T
Q  112 ag 113  Q
    ||    
T  31273007 ag 31273006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 45619100 - 45619191
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    ||||||| ||||| ||||| |||||||||| |||||||||||| |||||| | ||| |||||||||||||| ||| | | ||||||||||||    
T  45619100 atccaaacgacaccgttagataaatttcacctctttcacttaattttttttaattcctttcatgtttagaacttcttctgattctgattttt 45619191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 1419032 - 1419143
Alignment:
Q  17 tccaaatgacacagttaggtaaatttca---ctctttcacttaagtt--ttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatga 111  Q
    |||||||||||| |||||||||||||||   ||||||||||||| ||  |||| ||| |||||||||||| |||||| | | ||| ||| |||| |||||    
T  1419032 tccaaatgacaccgttaggtaaatttcacttctctttcacttaattttattttgttttgtttcatgtttaaaagttcttctgattttgactttttaatga 1419131  T
Q  112 agtttagctaca 123  Q
    | |||| |||||    
T  1419132 aatttaactaca 1419143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 197
Target Start/End: Complemental strand, 24233731 - 24233575
Alignment:
Q  45 ctctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctacatgaatt---ttatacgttgt 140  Q
    ||||||| ||||| |||||| |||||||| ||||||||||||||| | |||||||||||| |  ||| || ||||||||| | |||   || || || |     
T  24233731 ctctttcgcttaatttttttgatttcgttgcatgtttagaagttcttctaattctgatttgtgtatgtagcttagctacacggattttgttgtatgtggc 24233632  T
Q  141 tgaatgcttattagtgtttagtttttaaaatgccagtgtataattgcaaattttgtt 197  Q
      ||||||||||| |  ||| ||||||||||  |||||||||||||| |||||||||    
T  24233631 ataatgcttattaataattactttttaaaatttcagtgtataattgctaattttgtt 24233575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 12269551 - 12269639
Alignment:
Q  19 caaatgacacagttaggtaaatttcac-tctttcacttaagttttttat--ttcgtttcatgtttagaagttcatttaattctgatttt 104  Q
    |||| ||||| ||||| |||||||||| |||||||||||| |||||| |  ||| |||||||||||||||||| | | |||||||||||    
T  12269551 caaacgacaccgttagataaatttcacctctttcacttaatttttttttaattcctttcatgtttagaagttcttctgattctgatttt 12269639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 36481518 - 36481610
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac-tctttcacttaagttttttat--ttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    ||||||| ||||| | ||| |||||||||| |||||||||||| |||||| |  ||| |||||||||||||||||| | | ||||||||||||    
T  36481518 atccaaacgacaccggtagataaatttcacctctttcacttaatttttttttaattcctttcatgtttagaagttcttctgattctgattttt 36481610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 4856117 - 4856228
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctga--tttttaaatga 111  Q
    ||||||| ||||  ||||| |||||||||| |||||||||||| |||||| | ||| |||||||||||||| ||| | | |||||||  ||||| |||||    
T  4856117 atccaaacgacattgttagataaatttcacctctttcacttaattttttttaattcctttcatgtttagaacttcttctgattctgattttttttaatga 4856216  T
Q  112 agtttagctaca 123  Q
    | ||||||||||    
T  4856217 aatttagctaca 4856228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 18676247 - 18676159
Alignment:
Q  19 caaatgacacagttaggtaaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    |||| ||||| ||||| |||| ||||| |||||||||||| |||||| | ||| |||||||||||||||||| | | ||||||||||||    
T  18676247 caaacgacaccgttagataaagttcacctctttcacttaattttttttaattcctttcatgtttagaagttcttctgattctgattttt 18676159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 26151687 - 26151576
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgat--ttttaaatga 111  Q
    ||||||| ||||| ||||| |||||||||| |||||||||||| |||||| | ||  |||||||||||||| ||| | | ||||||||  |||| |||||    
T  26151687 atccaaacgacaccgttagataaatttcacctctttcacttaattttttttaattactttcatgtttagaacttcttctgattctgattttttttaatga 26151588  T
Q  112 agtttagctaca 123  Q
    | ||||||||||    
T  26151587 aatttagctaca 26151576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 26261622 - 26261673
Alignment:
Q  214 atgttgaatgtcgaaattttttgttatatgttggatgttgaaaaatataattg 266  Q
    ||||||||||||||||||| | ||||||||||| | |||||||||||||||||    
T  26261622 atgttgaatgtcgaaatttat-gttatatgttgaaagttgaaaaatataattg 26261673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 123
Target Start/End: Original strand, 13997444 - 13997547
Alignment:
Q  25 acacagttaggtaaatttcac---tctttcacttaagttt--tttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagc 119  Q
    ||||| |||||||||||||||   ||||||||||||  ||  ||||||| ||||  |||||| |||||| | | |||||||||||| ||||||| |||||    
T  13997444 acacatttaggtaaatttcacatctctttcacttaatcttgttttattttgttttgtgtttaaaagttcttctgattctgattttttaatgaagcttagc 13997543  T
Q  120 taca 123  Q
    ||||    
T  13997544 taca 13997547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 27302477 - 27302409
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac---tctttcacttaagttttttatttcgtttcatgttta 81  Q
    ||||||| ||||  ||||||||||||||||   | |||||||||| ||||| |||||||||||||||||    
T  27302477 atccaaacgacaacgttaggtaaatttcacctttatttcacttaattttttaatttcgtttcatgttta 27302409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 39081520 - 39081630
Alignment:
Q  17 tccaaatgacacagttaggtaaatttcac---tctttcacttaagttt--tttatttcgtttcatgtttagaagttcatttaattctgatttttaaatga 111  Q
    ||||||||||||| |||||||||||||||   |||||||||||| |||  ||| ||| ||||||| |||| |||||| | | |||||||||||  |||||    
T  39081520 tccaaatgacaca-ttaggtaaatttcacctctctttcacttaattttattttgttttgtttcatatttaaaagttcttatgattctgattttataatga 39081618  T
Q  112 agtttagctaca 123  Q
    || ||| |||||    
T  39081619 agcttaactaca 39081630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 2063932 - 2064040
Alignment:
Q  19 caaatgacacagttaggtaaatttcac-tctttcacttaagttttttat--ttcgtttcatgtttagaagttcatttaattctgattttta-aatgaagt 114  Q
    |||| ||||| ||||| |||||||||| |||||||||||| |||||| |  ||| || ||| |||||||| || | | ||||||||||||  ||||||||    
T  2063932 caaacgacaccgttagataaatttcacctctttcacttaatttttttttaattccttccatatttagaaggtcttctgattctgatttttttaatgaagt 2064031  T
Q  115 ttagctaca 123  Q
    |||||||||    
T  2064032 ttagctaca 2064040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 13001760 - 13001854
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcact---ctttcactta--agttttttatttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    ||||||| ||||| ||| |||||||| ||||   ||||||||||  | |||||||||||||||| ||||||||| |||  || ||||||||||||    
T  13001760 atccaaacgacactgttcggtaaattgcacttctctttcacttattaattttttatttcgtttcgtgtttagaaattctattgattctgattttt 13001854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 41096477 - 41096402
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac-tctttcacttaagttttttat--ttcgtttcatgtttagaagttc 88  Q
    ||||||| ||||| ||||| |||||||||| |||||||||||  |||||| |  ||| ||||||||||||||||||    
T  41096477 atccaaacgacaccgttagataaatttcacctctttcacttattttttttttaattcctttcatgtttagaagttc 41096402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 42759693 - 42759605
Alignment:
Q  19 caaatgacacagttaggtaaatttca-ctctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    |||| ||||| ||||| |||||| || ||||||||||||| |||||| | ||| |||||||||||||| ||| | | ||||||||||||    
T  42759693 caaacgacaccgttagataaattccatctctttcacttaattttttttaattcctttcatgtttagaacttcttctgattctgattttt 42759605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 59 - 197
Target Start/End: Complemental strand, 12268818 - 12268677
Alignment:
Q  59 ttttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctacatgaatt---ttatacgttgttgaatgcttattagt 155  Q
    |||||||||||||||||||||||| ||||  | | ||| |||||||| ||||||| ||| |||||||||||   |||||||||| | || || |||||||    
T  12268818 ttttttatttcgtttcatgtttagtagttattctgattatgattttttaatgaagcttatctacatgaattttgttatacgttgcttaaggcgtattagt 12268719  T
Q  156 gtttagtttttaaaatgccagtgtataattgcaaattttgtt 197  Q
      ||| ||||||||||  |||||||||||||| |||||||||    
T  12268718 aattactttttaaaatttcagtgtataattgctaattttgtt 12268677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 33452929 - 33452993
Alignment:
Q  59 ttttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 123  Q
    |||||||||||||||||||||||||||||| | ||||| |||||||| |||||||||||||||||    
T  33452929 ttttttatttcgtttcatgtttagaagttcttctaattatgattttttaatgaagtttagctaca 33452993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 42076232 - 42076343
Alignment:
Q  17 tccaaatgacacagttaggtaaatttcac---tctttcacttaagttt--tttatttcgtttcatgtttagaagttcatttaattctgatttttaaatga 111  Q
    |||||||||||| ||||||||||||||||   |||||||||||| |||  ||| ||| |||||||||||| |||||| ||| |||||||||||| |||||    
T  42076232 tccaaatgacaccgttaggtaaatttcacctatctttcacttaattttattttgttttgtttcatgtttaaaagttcttttgattctgattttttaatga 42076331  T
Q  112 agtttagctaca 123  Q
    || ||| |||||    
T  42076332 agcttatctaca 42076343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 3471722 - 3471834
Alignment:
Q  14 agatccaaatgacacagttaggtaaatttcac-tctttcacttaagttttttatttcgtttcatgtttagaagttcatttaattctga--tttttaaatg 110  Q
    ||||||||| ||||| ||||| |||||||||| | |||||||||| ||||||| ||| ||| |||||||||||||| | | |||||||  ||||| ||||    
T  3471722 agatccaaacgacaccgttagataaatttcacctatttcacttaatttttttaattcctttaatgtttagaagttcttatgattctgattttttttaatg 3471821  T
Q  111 aagtttagctaca 123  Q
    |||||||||||||    
T  3471822 aagtttagctaca 3471834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 12268649 - 12268594
Alignment:
Q  210 atatatgttgaatgtcgaaattttttgttatatgttggatgttgaaaaatataattg 266  Q
    ||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||    
T  12268649 atatatgttgaatgtcgaaattttt-gttatatgttgaaggttgaaaaatataattg 12268594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 32098119 - 32098019
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcact---ctttcacttaagtttttt--atttcgtttcatgtttagaagttcatttaattctgatttttaaatg 110  Q
    ||||||| ||||| |||| ||||||||||||   ||||||||||| ||||||  |||||||||||||||||||||||||| | |||  ||||||| ||||    
T  32098119 atccaaacgacaccgttacgtaaatttcacttctctttcacttaatttttttttatttcgtttcatgtttagaagttcatctgatttcgattttttaatg 32098020  T
Q  111 a 111  Q
    |    
T  32098019 a 32098019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 12531713 - 12531793
Alignment:
Q  45 ctctttcacttaagttttttat--ttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 123  Q
    ||||||||||||| ||||||||  ||||||||||||||||||| || | | |||||||||||| ||| ||| |||||||||    
T  12531713 ctctttcacttaatttttttatatttcgtttcatgtttagaagctcttcttattctgattttttaataaagcttagctaca 12531793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 1004184 - 1004271
Alignment:
Q  19 caaatgacacagttaggtaaatttcac-tctttcacttaagttttttatttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    |||| ||||| ||||| |||||||||| |||||||||||| ||||||| ||| ||||||||||| || ||| | | ||||||||||||    
T  1004184 caaacgacaccgttagataaatttcacctctttcacttaatttttttaattcctttcatgtttaaaacttcttctgattctgattttt 1004271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 7858209 - 7858299
Alignment:
Q  16 atccaaatgacacagttaggtaaatttca-ctctttcacttaagttttttatttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    ||||||||||||| ||||| ||||||||| ||||||||||| |  |||||  ||| |||||||||||||| ||| | | ||||||||||||    
T  7858209 atccaaatgacaccgttagataaatttcacctctttcactttatcttttttattcctttcatgtttagaacttcttctgattctgattttt 7858299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 3628688 - 3628598
Alignment:
Q  17 tccaaatgacacagttaggtaaatttca---ctctttcacttaagtt--ttttatttcgtttcatgtttagaagttcatttaattctgatt 102  Q
    |||||| |||||||||||||||||||||   ||||||||||||| ||  |||| |||  ||||||||||| |||||| ||| |||||||||    
T  3628688 tccaaacgacacagttaggtaaatttcacctctctttcacttaattttattttgttttctttcatgtttaaaagttcttttgattctgatt 3628598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 34523863 - 34523799
Alignment:
Q  45 ctctttcacttaagtttttt--atttcgtttcatgtttagaagttcatttaattctgatttttaa 107  Q
    ||||||||||||| ||||||  ||||||||||||||||||||| || | | ||||||||||||||    
T  34523863 ctctttcacttaatttttttgtatttcgtttcatgtttagaagctcttctgattctgatttttaa 34523799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 43926263 - 43926154
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgatttttaaatgaag 113  Q
    ||||||| ||||| ||||  |||||||||| |||||| ||||| |||||| | ||| |||||||||||||| ||| | | |||||||||||| | ||||     
T  43926263 atccaaacgacaccgttacataaatttcacctctttctcttaattttttttaattcctttcatgtttagaacttcttctgattctgattttttagtgaaa 43926164  T
Q  114 tttagctaca 123  Q
    ||||||||||    
T  43926163 tttagctaca 43926154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 42951721 - 42951623
Alignment:
Q  30 gttaggtaaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgat---ttttaaatgaagtttagctaca 123  Q
    ||||| |||||||||| |||||||||||| |||||| | ||| |||||||||| ||||||| | | ||||||||   ||||||||||| ||||||||||    
T  42951721 gttagataaatttcacctctttcacttaattttttttaattcctttcatgtttggaagttcttatgattctgattttttttaaatgaaatttagctaca 42951623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 3445659 - 3445750
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    ||||||| ||||| ||||| |||||||| | |||| ||||||| |||||| | ||| |||||||||||||||||| | | ||||||||||||    
T  3445659 atccaaacgacaccgttagataaatttcgcctcttccacttaattttttttaattcttttcatgtttagaagttcttctgattctgattttt 3445750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 5869212 - 5869150
Alignment:
Q  59 ttttttatttcgtttcatgtttagaagttcatttaattctga-tttttaaatgaagtttagctaca 123  Q
    ||||||||||| ||||||||||||||||||   | ||||||| ||||| |||||||||||||||||    
T  5869212 ttttttatttcatttcatgtttagaagttc---ttattctgatttttttaatgaagtttagctaca 5869150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 23567186 - 23567143
Alignment:
Q  43 cactctttcacttaagttttt-tatttcgtttcatgtttagaag 85  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||    
T  23567186 cactctttcacttaattttttgtatttcgtttcatgtttagaag 23567143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 13585424 - 13585514
Alignment:
Q  17 tccaaatgacacagttaggtaaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    |||||| ||| | ||||| |||||||||| | |||||||||| |||||| | ||| |||||||||||||||||| | | ||||||||||||    
T  13585424 tccaaacgacgccgttagataaatttcacctttttcacttaattttttttaattcctttcatgtttagaagttcttctgattctgattttt 13585514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 29372479 - 29372554
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac---tctttcacttaagttt--tttatttcgtttcatgtttagaagt 86  Q
    ||||||| |||||  |||||||||||||||   | |||||||||| |||  |||||||||||||||||||||||||    
T  29372479 atccaaacgacaccattaggtaaatttcacatttgtttcacttaattttattttatttcgtttcatgtttagaagt 29372554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 123
Target Start/End: Original strand, 35875071 - 35875133
Alignment:
Q  61 ttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 123  Q
    |||||||| |||||||||||| |||||| | | |||||||||||| ||||||| |||| ||||    
T  35875071 ttttattttgtttcatgtttaaaagttcttctgattctgattttttaatgaagcttagttaca 35875133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 18420549 - 18420457
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac-tctttcacttaagttttttat--ttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    ||||||| ||||| ||||| |||||||||| | |||||||||| |||||| |  ||| |||||||||||||||||  | | ||||||||||||    
T  18420549 atccaaacgacaccgttagataaatttcacctttttcacttaatttttttttaattcctttcatgtttagaagttattctgattctgattttt 18420457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 43967995 - 43967919
Alignment:
Q  31 ttaggtaaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    |||| |||||||||| |||||||||||| |||||| | ||| |||||| ||||||||||| | | ||||||||||||    
T  43967995 ttagataaatttcacctctttcacttaattttttttaattcctttcatatttagaagttcttctgattctgattttt 43967919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 7767189 - 7767300
Alignment:
Q  17 tccaaatgacacagttaggtaaatttcac---tctttcacttaagttt--tttatttcgtttcatgtttagaagttcatttaattctgatttttaaatga 111  Q
    |||||||||||||||||||||||||||||   |||||||||||| |||  ||||||| |||||||||||| |||||| | | ||||||| |||| |||||    
T  7767189 tccaaatgacacagttaggtaaatttcacatctctttcacttaattttattttattttgtttcatgtttaaaagttcttctgattctgactttttaatga 7767288  T
Q  112 agtttagctaca 123  Q
    || |||||||||    
T  7767289 agcttagctaca 7767300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 51939495 - 51939404
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    ||||||| ||||||||| | |||||||||| |||||||||||| |||||| | ||| |||||||||||||||||| | | ||||||||||||    
T  51939495 atccaaacgacacagttggttaaatttcacctctttcacttaattttttttaattcctttcatgtttagaagttcttctcattctgattttt 51939404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 46904865 - 46904976
Alignment:
Q  17 tccaaatgacacagttaggtaaatttcac---tctttcacttaagttt--tttatttcgtttcatgtttagaagttcatttaattctgatttttaaatga 111  Q
    |||||| ||||| ||||||||||||||||   |||||||||||| |||  ||| ||| |||||||||||| |||||| | | |||||||||||| |||||    
T  46904865 tccaaacgacaccgttaggtaaatttcacctctctttcacttaattttattttgttttgtttcatgtttaaaagttcttcttattctgattttttaatga 46904964  T
Q  112 agtttagctaca 123  Q
    || || ||||||    
T  46904965 agcttcgctaca 46904976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 121
Target Start/End: Original strand, 21596505 - 21596566
Alignment:
Q  60 tttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagcta 121  Q
    |||||||| | |||||||||||||||||| ||| |||||||||||| ||||||| |||||||    
T  21596505 tttttattacatttcatgtttagaagttcttttgattctgattttttaatgaagcttagcta 21596566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 15998415 - 15998481
Alignment:
Q  25 acacagttaggtaaatttcac---tctttcacttaagttttttatttcgtttcatgtttagaagttc 88  Q
    |||| ||||||||||||||||   |||||||||||| |||| | |||||||||||||||||||||||    
T  15998415 acaccgttaggtaaatttcacatctctttcacttaatttttctgtttcgtttcatgtttagaagttc 15998481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 8364297 - 8364388
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac-tctttcacttaa-gttttttatttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    ||||||| ||||| ||||| |||||||||| |||||||||||| |||||||| ||| |||||||||||||| ||| | | ||||| ||||||    
T  8364297 atccaaacgacaccgttagataaatttcacctctttcacttaatgttttttaattcctttcatgtttagaacttcttctgattctaattttt 8364388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 23067664 - 23067574
Alignment:
Q  16 atccaaatgacacagttaggtaaatttca-ctctttcacttaagttttttatttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    ||||||||||||| ||||| ||||||||| |||||||||||||  |||||  ||| |||||||||||||| ||| | | ||| ||||||||    
T  23067664 atccaaatgacaccgttagataaatttcacctctttcacttaatcttttttattcctttcatgtttagaacttcttctgattttgattttt 23067574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 27729709 - 27729635
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttc 88  Q
    ||||||| ||||| ||||| |||||||||| |||||||||||| |||||| | ||| ||||||||||||||||||    
T  27729709 atccaaacgacactgttagataaatttcacctctttcacttaattttttttaattcctttcatgtttagaagttc 27729635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 46791637 - 46791563
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttc 88  Q
    ||||||| ||||| ||||| |||||||||| |||||||||||| |||||| | ||| ||||||||||||||||||    
T  46791637 atccaaacgacaccgttagataaatttcacctctttcacttaattttttttaattcctttcatgtttagaagttc 46791563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 113
Target Start/End: Complemental strand, 1649732 - 1649681
Alignment:
Q  62 tttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaag 113  Q
    ||||||||||||||||||||||||||| | ||| || ||||||| |||||||    
T  1649732 tttatttcgtttcatgtttagaagttcttataactccgattttttaatgaag 1649681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 27110809 - 27110700
Alignment:
Q  19 caaatgacacagttaggtaaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgat---ttttaaatgaag 113  Q
    |||| ||||| ||||| |||||||||| |||||||||||| |||||| | ||| |||||||||||||| ||| | | ||||||||   |||| ||||||     
T  27110809 caaacgacaccgttagataaatttcacctctttcacttaattttttttaattcctttcatgtttagaacttcttatgattctgatttatttttaatgaaa 27110710  T
Q  114 tttagctaca 123  Q
    ||||||||||    
T  27110709 tttagctaca 27110700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 18408315 - 18408389
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttc 88  Q
    ||||||| ||||| ||| | |||||||||| |||||||||||| |||||| | ||| ||||||||||||||||||    
T  18408315 atccaaacgacaccgtttgataaatttcacctctttcacttaattttttttaattcctttcatgtttagaagttc 18408389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 113
Target Start/End: Original strand, 27303322 - 27303409
Alignment:
Q  31 ttaggtaaatttcac---tctttcacttaagttt--tttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaag 113  Q
    |||||||||||||||   |||||||||||| |||  ||| ||| |||||||||||| |||||| | | |||||||||||| |||||||    
T  27303322 ttaggtaaatttcacctctctttcacttaattttattttgttttgtttcatgtttaaaagttcttctgattctgattttttaatgaag 27303409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 28132662 - 28132565
Alignment:
Q  30 gttaggtaaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgatt--tttaaatgaagtttagctaca 123  Q
    ||||| |||||||||| |||||||||||| |||||| | ||| |||||||||||||||||| | | ||| |||||  ||| |||||| ||||||||||    
T  28132662 gttagataaatttcacctctttcacttaattttttttaattcctttcatgtttagaagttcttctgattttgatttcttttaatgaaatttagctaca 28132565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 123
Target Start/End: Complemental strand, 40152056 - 40151960
Alignment:
Q  31 ttaggtaaatttcac---tctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 123  Q
    |||||||||||||||   ||||||| |||| |||||| |||||||||||| |||| |||||  | | |||||||||||| ||||||| ||| |||||    
T  40152056 ttaggtaaatttcacctctctttcatttaattttttttatttcgtttcatatttaaaagtttttatgattctgattttttaatgaagcttaactaca 40151960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 41706992 - 41706900
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcactc-tttcacttaagtttttt-atttcgtttcatgtttagaagttcatt-taattctgattttt 105  Q
    ||||||| ||||  ||||| |||||||||| | |||||||||| |||||| | ||| |||||||||||||||||| || ||||||| ||||||    
T  41706992 atccaaacgacaacgttagataaatttcacccctttcacttaattttttttaattcttttcatgtttagaagttctttctaattctaattttt 41706900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 41038374 - 41038464
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac-tctttcacttaagttttttatttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    ||||||| ||||| ||||| |||||||||| |||||||||||| ||||||| ||| |||||||||||||||||| | | ||| ||||||||    
T  41038374 atccaaacgacaccgttagataaatttcacctctttcacttaatttttttaattcctttcatgtttagaagttcttctgattttgattttt 41038464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 5545455 - 5545528
Alignment:
Q  19 caaatgacacagttaggtaaatttcac-tctttcacttaagtttt---ttatttcgtttcatgtttagaagttc 88  Q
    |||| ||||| |||||||||||||||| |||||||||||| ||||   ||||||||||||||||||||||||||    
T  5545455 caaacgacaccgttaggtaaatttcacgtctttcacttaattttttttttatttcgtttcatgtttagaagttc 5545528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 26328924 - 26328859
Alignment:
Q  59 ttttttatttcgtttcatgtttagaagttcatttaattctgat-ttttaaatgaagtttagctaca 123  Q
    ||||||||||| |||||||||||||| ||| | |||||||||| |||| |||||||||||||||||    
T  26328924 ttttttatttcttttcatgtttagaaattcttctaattctgatttttttaatgaagtttagctaca 26328859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 55134363 - 55134443
Alignment:
Q  45 ctctttcacttaagtttttt--atttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 123  Q
    ||||||||||||| ||||||  ||||||||||||||||||||| || ||| || ||||||||| ||| ||| |||||||||    
T  55134363 ctctttcacttaatttttttgtatttcgtttcatgtttagaagctcttttgatcctgattttttaataaagcttagctaca 55134443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 32130727 - 32130639
Alignment:
Q  19 caaatgacacagttaggtaaatttca-ctctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    |||| |||||| |||| ||||||||| ||||||||||||| |||||| | ||| |||||||||||||||||| | | ||||||||||||    
T  32130727 caaacgacacaattagataaatttcatctctttcacttaattttttttaattcctttcatgtttagaagttcttctgattctgattttt 32130639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 19661503 - 19661594
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    ||||||| ||||| ||||| |||||||||| |||||||||||| |||||| | ||| |||||||||||||||||| | | |||||| |||||    
T  19661503 atccaaacgacaccgttagataaatttcacctctttcacttaattttttttaattcctttcatgtttagaagttcttctgattctgtttttt 19661594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 27632522 - 27632613
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    |||||||  |||| ||||| |||||||||| |||||||||||| |||||| | ||| |||||||||||||||||| | | ||||||||||||    
T  27632522 atccaaacaacaccgttagataaatttcacctctttcacttaattttttttaattcctttcatgtttagaagttcttctgattctgattttt 27632613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 53011836 - 53011950
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac-tctttcacttaa----gttttttatttcgtttcatgtttagaagttcatttaattctga--tttttaaa 108  Q
    ||||||| ||||| ||||| |||||||||| ||||||||||||     ||||||| ||| |||||||||||||||||| | | |||||||  ||||| ||    
T  53011836 atccaaacgacaccgttagataaatttcacctctttcacttaatttttttttttaattcctttcatgtttagaagttcttctgattctgattttttttaa 53011935  T
Q  109 tgaagtttagctaca 123  Q
    |||| ||||||||||    
T  53011936 tgaaatttagctaca 53011950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 9925302 - 9925358
Alignment:
Q  94 attctgatttttaaatgaagtttagctacatgaattttatacgttgttgaatgctta 150  Q
    |||||||||||| ||| ||| ||||||||| ||||||||||| ||||| ||||||||    
T  9925302 attctgattttttaataaagcttagctacacgaattttatactttgtttaatgctta 9925358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 274
Target Start/End: Original strand, 9925445 - 9925504
Alignment:
Q  214 atgttgaatgtcgaaattttttgttatatgttggatgttgaaaaatataattgttattttt 274  Q
    |||||||||||| || ||||| |||||| |||| |||||||||||||||||||||| ||||    
T  9925445 atgttgaatgtccaa-tttttcgttatacgttgaatgttgaaaaatataattgttaatttt 9925504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 16887923 - 16887812
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac-tctttcacttaa-gttttttatttcgtttcatgtttagaagttcatttaattctga--tttttaaatga 111  Q
    ||||||| ||||| ||||| |||||||||| ||||||||||||  ||||||| ||| |||||| ||||||||||  | | ||| |||  ||||| |||||    
T  16887923 atccaaacgacaccgttagataaatttcacctctttcacttaattttttttaattcctttcatatttagaagttattctgattatgattttttttaatga 16887824  T
Q  112 agtttagctaca 123  Q
    ||||||||||||    
T  16887823 agtttagctaca 16887812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 123
Target Start/End: Original strand, 24449271 - 24449333
Alignment:
Q  61 ttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 123  Q
    |||||||| |||||||||||| |||||| | | |||||||||||| ||||||| |||| ||||    
T  24449271 ttttattttgtttcatgtttaaaagttcttctgattctgattttttaatgaagcttagttaca 24449333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 23426092 - 23426015
Alignment:
Q  30 gttaggtaaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    ||||| |||||||||| |||||||||||| |||||| | ||| |||||||||||||||||| | | ||||| ||||||    
T  23426092 gttagataaatttcacctctttcacttaattttttttaattcctttcatgtttagaagttcttctgattctaattttt 23426015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 51066365 - 51066324
Alignment:
Q  16 atccaaatgacacagttaggtaaatttca-ctctttcactta 56  Q
    ||||||||||||| ||||||||||||||| ||||||||||||    
T  51066365 atccaaatgacactgttaggtaaatttcacctctttcactta 51066324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 264
Target Start/End: Original strand, 10387212 - 10387244
Alignment:
Q  232 ttttgttatatgttggatgttgaaaaatataat 264  Q
    ||||||||||||||| |||||||||||||||||    
T  10387212 ttttgttatatgttgaatgttgaaaaatataat 10387244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 10575465 - 10575388
Alignment:
Q  16 atccaaatgacacagttaggtaaatttca---ctctttcacttaagtt--ttttatttcgtttcatgtttagaagttc 88  Q
    |||| |||||||| || ||||||||||||   || |||||||| | ||  ||||||||||||||||||||||||||||    
T  10575465 atccgaatgacaccgtcaggtaaatttcatctctttttcactttattttattttatttcgtttcatgtttagaagttc 10575388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 28463525 - 28463437
Alignment:
Q  19 caaatgacacagttaggtaaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    |||| ||||| ||||| |||||||||| |||||||||||| |||||| | ||| ||| |||||||||| ||| | | ||||||||||||    
T  28463525 caaacgacaccgttagataaatttcacctctttcacttaattttttttaattcctttgatgtttagaacttcttctgattctgattttt 28463437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 35653919 - 35653810
Alignment:
Q  19 caaatgacacagttaggtaaatttcac---tctttcacttaagttt--tttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaag 113  Q
    |||||||||| ||||| ||||||||||   |||||||||||| |||  ||| ||| |||||||||||| |||||| | | |||| || |||| |||||||    
T  35653919 caaatgacaccgttagataaatttcacctctctttcacttaattttattttgttttgtttcatgtttaaaagttcttctgattcggactttttaatgaag 35653820  T
Q  114 tttagctaca 123  Q
     ||| |||||    
T  35653819 cttaactaca 35653810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 22742 - 22654
Alignment:
Q  19 caaatgacacagttaggtaaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    |||| ||||| ||||| |||||||||| |||||||||||| |||||| | ||| |||||||||||||||||| | | ||||||||||||    
T  22742 caaacgacaccgttagataaatttcacctctttcacttaattttttttaattcctttcatgtttagaagttcttctgattctgattttt 22654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 99086 - 99150
Alignment:
Q  59 ttttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 123  Q
    ||||| |||||||||||||||||||||||| | | |||||||||||| |||||||  ||||||||    
T  99086 tttttaatttcgtttcatgtttagaagttcttctgattctgattttttaatgaaggctagctaca 99150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 17069 - 16962
Alignment:
Q  19 caaatgacacagttaggtaaatttcac-tctttcacttaagttttttatttcgtttcatgtttagaagttcatttaattctgattt--ttaaatgaagtt 115  Q
    |||| ||||| ||| | |||||||||| |||||||||||| ||||||| ||| |||||||||||||| ||| |   ||||||||||  || |||||| ||    
T  17069 caaacgacaccgttggataaatttcacctctttcacttaatttttttaattcctttcatgtttagaacttcttcagattctgattttatttaatgaaatt 16970  T
Q  116 tagctaca 123  Q
    ||||||||    
T  16969 tagctaca 16962  T

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Target: scaffold0126 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 16834 - 16925
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgattttt 105  Q
    ||||||| ||||| ||||| |||||||||| |||||||||||| |||||| | ||| |||||||||||||| ||| | | ||||| ||||||    
T  16834 atccaaacgacaccgttagataaatttcacctctttcacttaattttttttaattcctttcatgtttagaacttcttctgattctaattttt 16925  T

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Target: scaffold0564 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 1185 - 1297
Alignment:
Q  16 atccaaatgacacagttaggtaaatttcac-tctttcacttaagttttttat--ttcgtttcatgtttagaagttcatttaattctga--tttttaaatg 110  Q
    ||||||| ||||| ||||| |||||||||| ||||||| |||| |||||| |  ||| |||||||||||||| ||| | | |||||||  ||||| ||||    
T  1185 atccaaacgacaccgttagataaatttcacctctttcatttaatttttttttaattcctttcatgtttagaacttcttctgattctgattttttttaatg 1284  T
Q  111 aagtttagctaca 123  Q
    || ||||||||||    
T  1285 aaatttagctaca 1297  T

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