View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4259_low_3 (Length: 691)

Name: NF4259_low_3
Description: NF4259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4259_low_3
NF4259_low_3
[»] chr3 (1 HSPs)
chr3 (17-682)||(45231438-45232103)


Alignment Details
Target: chr3 (Bit Score: 605; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 17 - 682
Target Start/End: Original strand, 45231438 - 45232103
Alignment:
Q  17 taaaaacaataacaagagtcaaataacataatcatcactcaaataatgccaaccaggagaggttcacgatatatgagaaataaggccaaccagactaact 116  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45231438 taaaaacaataacaagagtcaaataacataaacatcactccaataatgccaaccaggagaggttcacgatatatgagaaataaggccaaccagactaact 45231537  T
Q  117 ttctcagacggtaaacgaccggacaatagcgactcctcaaatgaaccgaccagggaccttctaattggcaacctattcaccgatccatataactttgcat 216  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45231538 ttctcagacggtaaacgaccggacaatagtgactcctcaaatgaaccgaccagggaccttctaattggcaacctattcaccgatccatataactttgcat 45231637  T
Q  217 gccgaggaggaaagctagcaggactagtccaatactcattcatatcaaggatattatcaggagtaaacagattgacatcactcaacatagtatcaaaatc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45231638 gccgaggaggaaagctagcaggactagtccaatactcattcatatcaaggatattatcaggagtaaacagattgacatcactcaacatagtatcaaaatc 45231737  T
Q  317 tccgtgttctcccaattttttatctgtacaagnnnnnnnacccaaaggagataaagggaagcgaggtgatgacgccttattttgaggtctcaagatcgtt 416  Q
    || | |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  45231738 tctgcgttctcccaattttttatctgtacaagtttttttacccaaaggagataaagggaagcgaggtgatgacgccttattttgaagtctcaagatcgtt 45231837  T
Q  417 tctgtttgtaacttcattttagttgaatcctccaaatcattaaatgcaggaaatgatctgtaatgtttaaaagatactggctcctcaatttcacagtttg 516  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  45231838 tctgtttgtgacttcattttagttgaatcctccaaatcattaaatgcaggaaatgatttgtaatgtttaaaagatactggctcctcaatttcacagtttg 45231937  T
Q  517 aatggccgtgactcgttaaaatttggtttgggtcattacatgatgaatctacaagttgatgaaaacaagaggaagaccaaagtggagagtgaatattgtt 616  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  45231938 aatggccgtgactcgttaaaatttggtttgggtcattacatgatgaatctacaagttgatgaaaacaagaggaagaccaaagtgtagagtgaatattgtt 45232037  T
Q  617 gtagtttctaatatgaaccttcttatccgcatgtagagtatcatcaccggcctctgaagacctttg 682  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  45232038 gtagtttctaatatgaaccttcttatccgcatgtagagtatcatcaccagcctctgaagacctttg 45232103  T

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