View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4259_low_30 (Length: 237)

Name: NF4259_low_30
Description: NF4259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4259_low_30
NF4259_low_30
[»] chr5 (3 HSPs)
chr5 (18-109)||(37999893-37999984)
chr5 (18-91)||(30909125-30909198)
chr5 (172-206)||(38000047-38000081)
[»] scaffold0758 (1 HSPs)
scaffold0758 (18-109)||(454-544)
[»] chr6 (1 HSPs)
chr6 (18-46)||(32451568-32451596)
[»] chr2 (1 HSPs)
chr2 (12-48)||(40446406-40446442)
[»] chr1 (1 HSPs)
chr1 (12-48)||(337030-337066)


Alignment Details
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 37999893 - 37999984
Alignment:
Q  18 atttcatttttataaatcaatttggtgtgaagnnnnnnnnggggataattatttcttacataatttatttttatcccactccttcattgtgg 109  Q
    ||||||||||||||||||||||||||||||||        ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37999893 atttcatttttataaatcaatttggtgtgaagaaaaaaaaggggataattacttcttacataatttatttttatcccactccttcattgtgg 37999984  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 30909125 - 30909198
Alignment:
Q  18 atttcatttttataaatcaatttggtgtgaagnnnnnnnnggggataattatttcttacataatttatttttat 91  Q
    ||||||||||||||||||||||||||||||||          ||||||||||||| ||||||||||||||||||    
T  30909125 atttcatttttataaatcaatttggtgtgaagaaaaaaaaaaggataattatttcatacataatttatttttat 30909198  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 172 - 206
Target Start/End: Original strand, 38000047 - 38000081
Alignment:
Q  172 cttggacatggtcatatatagtagtaaaaactaca 206  Q
    |||||||||||||||||||||||||||||||||||    
T  38000047 cttggacatggtcatatatagtagtaaaaactaca 38000081  T

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Target: scaffold0758 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 544 - 454
Alignment:
Q  18 atttcatttttataaatcaatttggtgtgaagnnnnnnnnggggataattatttcttacataatttatttttatcccactccttcattgtgg 109  Q
    ||||||||||||||||||||||||||||||||          | |||||||||||||||||||||||||||||| | |||||||||||||||    
T  544 atttcatttttataaatcaatttggtgtgaagaaaaaaaaaag-ataattatttcttacataatttatttttattctactccttcattgtgg 454  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 32451596 - 32451568
Alignment:
Q  18 atttcatttttataaatcaatttggtgtg 46  Q
    |||||||||||||||||||||||||||||    
T  32451596 atttcatttttataaatcaatttggtgtg 32451568  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 40446406 - 40446442
Alignment:
Q  12 tcatcaatttcatttttataaatcaatttggtgtgaa 48  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  40446406 tcatctatttcatttttattaatcaatttggtgtgaa 40446442  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 337030 - 337066
Alignment:
Q  12 tcatcaatttcatttttataaatcaatttggtgtgaa 48  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  337030 tcatctatttcatttttattaatcaatttggtgtgaa 337066  T

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