View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4259_low_4 (Length: 516)
Name: NF4259_low_4
Description: NF4259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4259_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 2125602 - 2125858
Alignment:
| Q |
17 |
atatgcaaacagaaaaaggaacatcgatagnnnnnnnn--gaggggtaataatcatcaatagttgctaatcattttttactgatatctacattatggcag |
114 |
Q |
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| T |
2125602 |
atatgcaaacagaaaaaggaacatcgatagttttttttttgaggggtaatcatca--aatagttgctaatcattttttactgatatctacattatggcag |
2125699 |
T |
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| Q |
115 |
tatgaaatctgttattgagcgctacaacaaacagaaagaggaacaacatcagctaatgaatccagcttcagaagtgaaggtaactatttctatactattc |
214 |
Q |
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| T |
2125700 |
tatgaaatctgttattgagcgctacaacaaacagaaagaggaacaacatcagctaatgaatccagattcagaagtgaaggtaactatttctatactattc |
2125799 |
T |
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| Q |
215 |
acctagttagttgtgaaacatcaag----ttactaaaaacattcataataccattagtt |
269 |
Q |
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| T |
2125800 |
acctagttagttgtgaaacatcaagttaattactaaaaacattcataataccattagtt |
2125858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 273 - 488
Target Start/End: Original strand, 2125899 - 2126116
Alignment:
| Q |
273 |
atccaaaccatcaccatgttgtaattatgggagtgtagaaactaggtcattatatcattaacagatttatggggtggttggnnnnnnnn--cataaacac |
370 |
Q |
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| T |
2125899 |
atccaaaccatcaccatgttataattattggagtgtagaaactaggtcattataacattaacacatttatggggtggttggaaaaaaaaaacataaacac |
2125998 |
T |
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| Q |
371 |
atgtaaaacattgcttgtagtatcttatttcaatccatcaatttatctatatccttttgttgttgtgttttacttacaagaacttttattttggtgttat |
470 |
Q |
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| T |
2125999 |
atgtaaaacattgcttgtagtatcttatttcaatccatcaatttatctatatccttttgttgttgtgttttacttacaagaacttttattttggtgttat |
2126098 |
T |
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| Q |
471 |
gttagtctgtatgttgtc |
488 |
Q |
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| T |
2126099 |
gttagtctgcatgttgtc |
2126116 |
T |
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