View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4259_low_6 (Length: 439)
Name: NF4259_low_6
Description: NF4259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4259_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 180 - 424
Target Start/End: Original strand, 11416034 - 11416278
Alignment:
| Q |
180 |
taatgcattaagatgctcaacataagaagtttgttgaaatttcgtttcattaatgatttgtttacagaattggaaccaacttatgtacggagatgaatta |
279 |
Q |
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| T |
11416034 |
taatgcatgaagatggtcaacttagaaagtttgttgaaatttcatttcattaatgatttgtttacagaattggaaccaacttatgtacggagataaatta |
11416133 |
T |
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| Q |
280 |
agaagcagaaatagtaataagattcttataaagtgttgactaaagtctgagaagggctggtttcannnnnnnngtgattggacattttgttcagtaaaat |
379 |
Q |
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| T |
11416134 |
agaagcagaaataataataagattcttataaagtgttgactaaagtctgagaagggctggtttcatttttttaatgattggacattttgttcaataaaat |
11416233 |
T |
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| Q |
380 |
catcaatcgaaaaagcaataattcaatttaaataccgtgaatgtt |
424 |
Q |
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| T |
11416234 |
catcaatcgaaaaagcaataattcaatttaaataccgtgaatgtt |
11416278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 11415879 - 11415916
Alignment:
| Q |
12 |
aaaggaaagaagaacagaaaatgatattagagaaacga |
49 |
Q |
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| T |
11415879 |
aaaggaaagaagaccagaaaatgatattagagaaacga |
11415916 |
T |
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