View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4259_low_7 (Length: 439)
Name: NF4259_low_7
Description: NF4259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4259_low_7 |
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| [»] scaffold0691 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 14 - 429
Target Start/End: Original strand, 2852949 - 2853375
Alignment:
| Q |
14 |
aaatagaaaagccaaagtcacttagtgaatggaatccacgttttccttgatttgtgcaggatgaggagaaaatgtgttatttcgaactgaagcaccatat |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2852949 |
aaatagaaaagccaaagtcacttagtgaatggaatccacattttccttgatttgtgcaggatgaggagaaaatgtgttatttcgaattgaagcaccatat |
2853048 |
T |
|
| Q |
114 |
aagaaatgaagaacaaaatacgacatctttgagctgtaacacagagaacccgaatttctgtccacattaacacaataaataatctagtcagttatcttat |
213 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2853049 |
aagaaatgaagaacaaaatacgacacctttgagctgtaacacagagaacccgaatttctgtccacattaacacaataaataatctagtcagttatcttat |
2853148 |
T |
|
| Q |
214 |
acagttgcaatttaattgttcatgttaaatgaagtgtccctataaaactggatgccactgccaaattgcattacatgatatgatagcacatcgaaattta |
313 |
Q |
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|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2853149 |
acagttgcaatttaattgatcatgttaaatgaagcgtccctataaaactggatgccactgccaaattgcattacatgatatgatagcacatcgaaattta |
2853248 |
T |
|
| Q |
314 |
aat-----------caataaaagttataaccagcatcgttcatgaaaagtatcttcagttatttcacaagatatttgtgaaataacttatcaggttccct |
402 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2853249 |
aatcaataaaagtacaataaaagttataaccagcatcgttcatgaaaagtatcttcagttatttcacaagatatttgtgaaataactcatcaggttccct |
2853348 |
T |
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| Q |
403 |
tttgcaaccagttttaccacctgatga |
429 |
Q |
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| T |
2853349 |
tttgcaaccagttttaccacctgatga |
2853375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 2835173 - 2835424
Alignment:
| Q |
18 |
agaaaagccaaagtcacttagtgaatggaatccacgttttccttgatttgtgcaggatgaggagaaaatgtgttatttcgaactgaagcaccatataaga |
117 |
Q |
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||||||||||||||||| ||| |||||||||||| |||||||||||||||||| ||||||||| |||||| | |||| ||| ||||| | |||| ||| |
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| T |
2835173 |
agaaaagccaaagtcacgtagcgaatggaatccatattttccttgatttgtgcatgatgaggaggaaatgtttgattttgaattgaagaatcatagaagg |
2835272 |
T |
|
| Q |
118 |
aatgaagaacaaaatacgacatctttgagctgtaacacagagaacccgaatttctgtc-cacattaacacaataaataatctagtcagttatcttataca |
216 |
Q |
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|| |||||||||||||||||||||||||| |||| || ||||||| ||||||||||| |||||||||| |||||||| |||||||| ||| ||||| |
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| T |
2835273 |
aaagaagaacaaaatacgacatctttgagttgtatcatggagaacctgaatttctgtcaaacattaacac---aaataatcgagtcagttttctcataca |
2835369 |
T |
|
| Q |
217 |
gttg-caatttaattgttcatgttaaatgaagtgtccctataaaactggatgcca |
270 |
Q |
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|||| |||||||||| ||||||||||||||| |||||||||||||| ||||||| |
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| T |
2835370 |
gttgtcaatttaattaatcatgttaaatgaagcgtccctataaaactagatgcca |
2835424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 328 - 429
Target Start/End: Original strand, 2835424 - 2835525
Alignment:
| Q |
328 |
ataaccagcatcgttcatgaaaagtatcttcagttatttcacaagatatttgtgaaataacttatcaggttcccttttgcaaccagttttaccacctgat |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2835424 |
ataaccagcatcgttcatgaaaagtatcttcagttatttcacaagatatttgtgaaataactcatcaggttcccttttgcaaccagttttaccacctgat |
2835523 |
T |
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| Q |
428 |
ga |
429 |
Q |
| |
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|| |
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| T |
2835524 |
ga |
2835525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 220
Target Start/End: Complemental strand, 2751667 - 2751568
Alignment:
| Q |
120 |
tgaagaacaaaatacgacatctttgagctgtaacacagagaacccgaatttctgtccacattaacacaataaataatctagtcagttatcttatacagtt |
219 |
Q |
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||||||||||| |||| |||||||||||||||| | ||||| | |||||||||||||| || |||||| ||| ||| |||||| |||| |||||||| |
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| T |
2751667 |
tgaagaacaaattacgtcatctttgagctgtaa-atggagaatctgaatttctgtccaccttcacacaagaaacaattgagtcaggtatcacatacagtt |
2751569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 230
Target Start/End: Complemental strand, 2773576 - 2773462
Alignment:
| Q |
116 |
gaaatgaagaacaaaatacgacatctttgagctgtaacacagagaacccgaatttctgtccacattaacacaataaataatctagtcagttatcttatac |
215 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||| | ||| | || |||| ||||||||||| ||||| ||| |||| | |||| ||||| |||| |
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| T |
2773576 |
gaaatgaagaacaaaatacgttatctttgagctgtaa-atggaggatccaaattgctgtccacattggcacaagaaacaatcgactcaggtatctcatac |
2773478 |
T |
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| Q |
216 |
agttg-caatttaatt |
230 |
Q |
| |
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| T |
2773477 |
atttgccaatttaatt |
2773462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 2752609 - 2752553
Alignment:
| Q |
123 |
agaacaaaatacgacatctttgagctgtaacacagagaacccgaatttctgtccaca |
179 |
Q |
| |
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||||| |||||| ||||||||||||| | || ||||||||| |||||||||||||| |
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| T |
2752609 |
agaacgaaatacatcatctttgagctgcatcatagagaacccaaatttctgtccaca |
2752553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 5415311 - 5415275
Alignment:
| Q |
118 |
aatgaagaacaaaatacgacatctttgagctgtaaca |
154 |
Q |
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|||||||||||||||||| ||||||||||||||||| |
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| T |
5415311 |
aatgaagaacaaaatacgttatctttgagctgtaaca |
5415275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 11114871 - 11115072
Alignment:
| Q |
14 |
aaatagaaaagccaaagtcacttagtgaatggaatccacgttttccttgatttgtgcaggatgaggagaaaatgtgttatttcgaactgaagcaccatat |
113 |
Q |
| |
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|||| ||||||||||||||||| |||||| ||| ||| | |||| |||||| |||||| ||| || |||| | |||||| ||| ||||| |||||| |
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| T |
11114871 |
aaattgaaaagccaaagtcactaagtgaacggagtccgcattttacttgatagttgcaggcagagaaggaaatattttattttgaattgaagtaccatag |
11114970 |
T |
|
| Q |
114 |
aagaaatgaagaacaaaatacgacatctttgagctgtaacacagagaacccgaatttctgtccacattaacacaataaataatctagtcagttatcttat |
213 |
Q |
| |
|
| | ||||||||||||||| | ||||||||||| ||| || |||||||| || ||||||||| ||| | |||| ||| ||| |||||||||||| || |
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| T |
11114971 |
atggaatgaagaacaaaatctgccatctttgagcggtatcattgagaaccc-aaattctgtccaaatttatacaagaaacaattgagtcagttatctcat |
11115069 |
T |
|
| Q |
214 |
aca |
216 |
Q |
| |
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||| |
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|
| T |
11115070 |
aca |
11115072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 209
Target Start/End: Original strand, 3090 - 3209
Alignment:
| Q |
90 |
ttatttcgaactgaagcaccatataagaaatgaagaacaaaatacgacatctttgagctgtaacacagagaacccgaatttctgtccacattaacacaat |
189 |
Q |
| |
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|||||| ||||| |||||| ||| | | ||||||||||||||| || ||| ||||| |||||||| ||| ||| ||||||||||||||| ||| || |
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| T |
3090 |
ttattttgaactcaagcactatagatggaatgaagaacaaaatgcgtcatgtttgaactgtaacatggaggctccggatttctgtccacattgacaaaag |
3189 |
T |
|
| Q |
190 |
aaataatctagtcagttatc |
209 |
Q |
| |
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||| ||| ||||||||||| |
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|
| T |
3190 |
aaacaattgagtcagttatc |
3209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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