View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4259_low_8 (Length: 429)
Name: NF4259_low_8
Description: NF4259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4259_low_8 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0758 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Complemental strand, 38000521 - 38000093
Alignment:
| Q |
1 |
aatacaaatatcatggaatgatggagtgaatggcgaggagcatggtaattgaatgagatttagttaatcaatgattgtcttgactcttgaggcatggtga |
100 |
Q |
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| T |
38000521 |
aatacaaatatcatggaatgatggagtgaatggcgaggagcatggtaattgaatgagatttagttaatcaatgattgtcttgactcttgaggcatggtga |
38000422 |
T |
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| Q |
101 |
gagagaaggaaaatttggtcgattgaagaaaatgtgtcttaattgagagaagggaaattgtggaagaaaattgtataagcaagagaagacagaaaatata |
200 |
Q |
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| T |
38000421 |
gagagaaggaaaatttggtagattgaagaaaatgtgtcttaattgagagaagggaaattgtggaagaaaattgtatgagcaagagaagacagaaaatata |
38000322 |
T |
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| Q |
201 |
tcatggtctgttattgaatgaacacggttttctcttatttttatgcaaagcaatttgctacattgtgcaactaatatttttgttctcctttcttccccct |
300 |
Q |
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| T |
38000321 |
tcatggtctgttattgaatgaacacggttttctcttatttttatgcaaagcaatttgctacattgtgcaactaatatttttgttctcctttcttccccct |
38000222 |
T |
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| Q |
301 |
gtattgaatgaacacggttttctcctatttttgtgcaaatgggttttctcctatttctcacacaagtaaagcaactaagccaagttattagtagtaatct |
400 |
Q |
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| T |
38000221 |
gtattgaatgaacacggttttctcctatttttgtgcaaatgggttttctcctatttctcacacaagtaaagccactaagccaagttattaggagtaatct |
38000122 |
T |
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| Q |
401 |
gtaacgtatttgactgagcaattgggtac |
429 |
Q |
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| T |
38000121 |
gtaacgtatttgactgagcaattgggtac |
38000093 |
T |
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Back To:
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Target: scaffold0758 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0758
Description:
Target: scaffold0758; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 377 - 429
Target Start/End: Original strand, 290 - 342
Alignment:
| Q |
377 |
aagccaagttattagtagtaatctgtaacgtatttgactgagcaattgggtac |
429 |
Q |
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| T |
290 |
aagccaagttattaggagtaatctgtaacctatttgactgagcaattgggtac |
342 |
T |
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