View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4260-Insertion-2 (Length: 87)
Name: NF4260-Insertion-2
Description: NF4260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4260-Insertion-2 |
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| [»] chr3 (2 HSPs) |
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| [»] chr4 (3 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 83; Significance: 6e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 6e-40
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 202433 - 202519
Alignment:
| Q |
1 |
tttattgtgtgaggaaatctttgctcgagacatgttgtttttaatcttttcttttctaagtattaagttttgctccaatacatttga |
87 |
Q |
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| T |
202433 |
tttattgtgtgaggaaatctttgctcgagacatgttgtttttgatcttttcttttctaagtattaagttttgctccaatacatttga |
202519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 6e-34
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 206667 - 206583
Alignment:
| Q |
1 |
tttattgtgtgaggaaatctttgctcgagacatgttgtttttaatcttttcttttctaagtattaagttttgctccaatacattt |
85 |
Q |
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| T |
206667 |
tttattgtgtgaggaaatctttgcttgagacatgttgtttttgatcttttcttttccaagtattaagttttgctccaatacattt |
206583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 1e-37; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-37
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 44924527 - 44924441
Alignment:
| Q |
1 |
tttattgtgtgaggaaatctttgctcgagacatgttgtttttaatcttttcttttctaagtattaagttttgctccaatacatttga |
87 |
Q |
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| T |
44924527 |
tttattgtgtgaggaaatctttgctcgagacatgttgttttttatcctttcttttctaagtattaagttttgctccaatacatttga |
44924441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 9e-33
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 6908553 - 6908468
Alignment:
| Q |
1 |
tttattgtgtgaggaaatctttgctcgagacatgttgtttttaatcttttcttttctaagtattaagttttgctccaatacatttga |
87 |
Q |
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| T |
6908553 |
tttattgtgtgaggaaatctttgctcaagacatgttgtttttgatcttttcttttctaagtatt-agttttgctccaatacatttga |
6908468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-23
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 6901694 - 6901756
Alignment:
| Q |
25 |
tcgagacatgttgtttttaatcttttcttttctaagtattaagttttgctccaatacatttga |
87 |
Q |
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| T |
6901694 |
tcgagacatgttgtttttgatcttttcttttccaagtattaagttttgctccaatacatttga |
6901756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 9e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 9e-33
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 24652949 - 24653035
Alignment:
| Q |
1 |
tttattgtgtgaggaaatctttgctcgagacatgttgtttttaatcttttcttttctaagtattaagttttgctccaatacatttga |
87 |
Q |
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| T |
24652949 |
tttattgtgtgaggaaatctttgctcaaaacatgttgtttttgatcttttcttttccaagtattaagttttgctccaatacatttga |
24653035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 7e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 7e-21
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 29514631 - 29514717
Alignment:
| Q |
1 |
tttattgtgtgaggaaatctttgctcgagacatgttgtttttaatcttttcttttctaagtattaagttttgctccaatacatttga |
87 |
Q |
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| T |
29514631 |
tttattgtgcgagtaaatctttgctcgagagatgttctttttgagcttttcttttccaagtatagagttttgctccaatacatttga |
29514717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 5e-19
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 43626334 - 43626417
Alignment:
| Q |
1 |
tttattgtgtgaggaaatctttgctc-gagacatgttgtttttaatcttttcttttctaagtattaagttttgctccaatacat |
83 |
Q |
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| T |
43626334 |
tttattgtgtaaggaaatcttttctcagagacgtgttgttttttatctcttcttttccaaatattaagttttgctccaatacat |
43626417 |
T |
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