View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4260-Insertion-4 (Length: 58)

Name: NF4260-Insertion-4
Description: NF4260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4260-Insertion-4
NF4260-Insertion-4
[»] chr4 (4 HSPs)
chr4 (4-58)||(14455772-14455826)
chr4 (4-58)||(14495524-14495578)
chr4 (21-58)||(14460271-14460308)
chr4 (4-52)||(14471103-14471151)
[»] scaffold0221 (1 HSPs)
scaffold0221 (21-58)||(9850-9887)


Alignment Details
Target: chr4 (Bit Score: 51; Significance: 4e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-21
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 14455826 - 14455772
Alignment:
Q  4 gaattaaaccagcaaagccagcagttgagaggttcagatattgcaaattcaccaa 58  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14455826 gaattaaaccagcaaagccagcagttgacaggttcagatattgcaaattcaccaa 14455772  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-21
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 14495524 - 14495578
Alignment:
Q  4 gaattaaaccagcaaagccagcagttgagaggttcagatattgcaaattcaccaa 58  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14495524 gaattaaaccagcaaagccagcagttgacaggttcagatattgcaaattcaccaa 14495578  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.00000000006
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 14460308 - 14460271
Alignment:
Q  21 ccagcagttgagaggttcagatattgcaaattcaccaa 58  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  14460308 ccagcagttgacaggttcagatattgcaaattcaccaa 14460271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 14471103 - 14471151
Alignment:
Q  4 gaattaaaccagcaaagccagcagttgagaggttcagatattgcaaatt 52  Q
    |||||||||||||||| |||||| |||| |||||||||||||| |||||    
T  14471103 gaattaaaccagcaaatccagcatttgaaaggttcagatattgtaaatt 14471151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 34; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 34; E-Value: 0.00000000006
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 9887 - 9850
Alignment:
Q  21 ccagcagttgagaggttcagatattgcaaattcaccaa 58  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  9887 ccagcagttgacaggttcagatattgcaaattcaccaa 9850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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