View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4260-Insertion-5 (Length: 59)
Name: NF4260-Insertion-5
Description: NF4260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4260-Insertion-5 |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 51; Significance: 5e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-21
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 41837231 - 41837173
Alignment:
| Q |
1 |
tatataagaagctagccgcaaaaaaggaatcattaggctttggcacatcacggtttggg |
59 |
Q |
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| T |
41837231 |
tatataagaagctaaccgcaaaaaaggaatcatcaggctttggcacatcacggtttggg |
41837173 |
T |
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Target: chr4 (Bit Score: 51; Significance: 5e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-21
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 11650242 - 11650184
Alignment:
| Q |
1 |
tatataagaagctagccgcaaaaaaggaatcattaggctttggcacatcacggtttggg |
59 |
Q |
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|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11650242 |
tatataagaagctaaccgcaaaaaaggaatcatcaggctttggcacatcacggtttggg |
11650184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 3e-16
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 26059932 - 26059990
Alignment:
| Q |
1 |
tatataagaagctagccgcaaaaaaggaatcattaggctttggcacatcacggtttggg |
59 |
Q |
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|||| |||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
26059932 |
tataaaagaagctagccgcaaaaaaggaatcatcggactttggcacatcacggtttggg |
26059990 |
T |
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