View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4260_high_2 (Length: 381)
Name: NF4260_high_2
Description: NF4260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4260_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 10 - 363
Target Start/End: Complemental strand, 3428251 - 3427892
Alignment:
| Q |
10 |
ataatactatttacgtgttcggacttctatgtgggtagaattttcattattttgatttgaattttgg-------gtgccaatagtagtactcaaaatgca |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
3428251 |
ataatactatttacgtgttcggacttctatgtgggtagaattttcattattttgatttgaattttggactttgggtgccaatagtagtactcaaaatgga |
3428152 |
T |
|
| Q |
103 |
tacggtaatgttaaaacattcaaaccatatatgcattagcaaacaacaaattccgattccaattcgctaaatgtcaaaattaacgtttaagtccacgtta |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3428151 |
tacggtaatgttaaaacattcaaaccatat--gcattagcaaacaacaaattccgattccaattcgctaaatgtcaaaattaacgtttaagtccacgtta |
3428054 |
T |
|
| Q |
203 |
ctaatttcttttagggagcattgccacacacgtacacattaagtgtaagaaatatcttcattacttcattataaaagaactaagaaattgtcttaaatct |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3428053 |
ctaatttcttttagggagcattgccacacacgtacacattaagtgtaagaaatatcttcattacttcattataaaagaactaagaaattgtcttaaatct |
3427954 |
T |
|
| Q |
303 |
tcacgatc-nnnnnnnntataagatagatagctagctaaaccatggcggcatctatctcacc |
363 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3427953 |
tcacgatcaaaaaaaaatataagatagatagctagctaaaccatggcggcatctatctcacc |
3427892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University